Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000883.1 Hibiscus syriacus cultivar Beakdansim tig00001717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50333

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1378--1449
33
2.2
33
85
11
96
31
8
22
37
1.84
1427--1527
31
3.4
30
85
12
136
15
9
33
40
1.81
2064--2100
18
2.1
18
94
0
65
32
27
5
35
1.79
6330--6362
16
2.0
17
94
5
59
24
30
18
27
1.98
8619--8749
67
2.0
66
84
1
172
28
19
12
38
1.89
8766--9036
102
2.6
102
87
4
375
32
18
11
37
1.87
9697--9936
104
2.3
103
84
2
311
37
24
14
24
1.92
12434--12467
17
2.0
17
88
11
52
38
5
5
50
1.51
17210--18188
81
12.1
81
92
0
1571
30
22
11
34
1.90
18527--18622
46
2.1
46
90
0
147
21
23
10
43
1.84
19118--19167
20
2.5
20
83
0
55
26
32
12
30
1.92
20815--20848
2
17.0
2
100
0
68
50
0
0
50
1.00
21875--21922
25
2.1
21
85
14
60
8
16
8
66
1.42
26624--26669
24
1.9
24
100
0
92
54
8
23
13
1.66
29954--29995
21
2.0
21
95
0
75
26
28
21
23
1.99
30107--30190
34
2.5
33
86
5
123
20
25
32
22
1.98
31580--31627
20
2.5
20
82
3
62
31
12
6
50
1.65
32994--33049
15
3.5
15
73
21
51
21
23
33
21
1.97
32994--33057
33
1.9
33
93
0
110
21
26
31
20
1.98
35730--35771
21
2.0
21
90
0
66
23
28
23
23
2.00
35883--35964
34
2.3
35
82
13
98
19
23
35
21
1.96
36703--36822
62
1.9
63
81
8
147
32
20
19
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38644--38711
35
1.9
35
88
5
102
47
17
0
35
1.48
38723--38788
33
1.9
35
84
6
91
33
0
22
43
1.54
42617--42805
87
2.2
87
92
1
308
36
25
5
31
1.80
44749--45129
135
2.8
136
77
9
373
37
16
14
31
1.90
45151--45450
143
2.1
141
83
6
365
35
20
18
26
1.95
47960--48379
143
2.9
140
80
9
454
40
12
12
34
1.81
47960--48381
73
5.9
71
76
7
353
40
12
12
34
1.81
48500--48714
110
2.0
111
84
10
291
46
14
10
28
1.77
49659--49804
45
3.2
44
85
6
202
32
21
6
39
1.80
49663--49794
47
2.9
46
88
4
196
31
22
7
37
1.82

Tables:   1

The End!