genome.fa.s8830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008830.1 Hibiscus syriacus cultivar Beakdansim tig00112021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78713

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228--1382	63	2.4	64	84	3	197	29	16	25	29	1.96
1330--1380	19	2.7	19	85	8	70	25	15	35	23	1.94
2030--2064	18	1.9	18	88	0	52	37	5	31	25	1.80
4254--4293	19	2.1	19	90	0	62	40	5	40	15	1.68
5445--5490	20	2.3	19	85	14	58	26	15	8	50	1.73
10512--10539	14	2.0	14	100	0	56	78	0	0	21	0.75
11356--11710	187	1.9	187	95	1	649	40	2	8	47	1.49
30375--30408	18	1.9	18	88	5	52	17	26	29	26	1.98
31464--31588	50	2.5	50	80	6	164	16	31	27	25	1.96
31709--31747	10	3.9	10	93	0	69	20	28	0	51	1.48
31705--31755	20	2.5	20	87	0	75	25	29	0	45	1.54
31797--31837	18	2.3	18	91	4	66	29	4	2	63	1.28
31907--32120	111	1.9	111	100	0	428	36	7	11	44	1.69
34006--34036	15	2.1	15	93	0	53	32	12	35	19	1.90
36522--36555	18	1.9	18	88	5	52	20	5	0	73	1.04
36930--36973	23	1.9	23	90	0	70	34	6	18	40	1.77
37590--38041	182	2.5	181	89	2	685	28	15	11	44	1.82
37918--38514	111	5.4	112	94	0	984	24	15	13	45	1.83
37918--38514	223	2.7	224	92	1	993	24	15	13	45	1.83
38696--39083	184	2.1	184	93	0	661	45	9	2	42	1.50
39210--39238	15	1.9	15	100	0	58	17	6	27	48	1.72
40234--40322	3	29.7	3	100	0	178	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45272--45334	20	2.9	21	79	9	65	15	25	34	23	1.95
49138--49177	21	1.9	21	85	10	55	35	10	2	52	1.48
57037--57203	30	5.6	29	75	5	127	57	10	13	17	1.64
57037--57203	59	2.8	60	79	5	176	57	10	13	17	1.64
58887--58928	3	14.3	3	80	14	52	66	2	0	30	1.04
58882--58919	18	2.1	18	95	0	67	71	5	0	23	1.07
60454--60492	20	2.0	20	85	10	53	28	12	7	51	1.67
61719--61781	31	2.0	31	93	0	108	25	17	7	49	1.74
63487--63521	18	1.9	18	94	0	61	28	31	14	25	1.95
64484--64538	27	2.0	27	96	0	101	18	50	7	23	1.71
64582--64642	18	3.2	18	71	13	50	19	36	8	36	1.82
75037--75077	13	3.1	13	89	3	64	24	34	14	26	1.94
75481--75556	23	3.2	22	68	15	62	61	1	3	32	1.22

Tables:   1

The End!