Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008831.1 Hibiscus syriacus cultivar Beakdansim tig00112022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69496

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3534--3570
14
2.7
14
84
15
51
24
10
24
40
1.87
4263--4287
12
2.1
12
100
0
50
24
8
8
60
1.52
18385--18414
16
1.9
15
93
6
51
63
10
0
26
1.26
18918--18983
4
17.0
4
82
6
82
27
4
22
45
1.72
19554--19578
2
12.5
2
100
0
50
52
0
0
48
1.00
22830--22885
2
28.0
2
88
0
85
44
0
5
50
1.25
22830--22885
10
5.6
10
97
0
94
44
0
5
50
1.25
24630--24665
18
2.0
18
100
0
72
33
33
0
33
1.58
28693--28735
21
2.0
21
82
8
52
48
13
11
25
1.77
34813--34843
16
1.9
16
93
0
53
45
6
6
41
1.55
35556--35608
22
2.4
22
93
0
97
16
16
28
37
1.91
35654--35793
41
3.5
41
95
1
239
21
19
22
37
1.95
35666--35772
21
5.2
21
71
4
101
22
18
24
34
1.96
35781--35834
22
2.5
22
93
0
99
16
16
27
38
1.90
35950--36009
6
10.0
6
100
0
120
33
50
16
0
1.46
36491--36521
5
6.4
5
92
7
55
0
38
22
38
1.54
36614--36685
21
3.4
21
73
7
65
34
26
15
23
1.94
36653--36729
21
3.7
21
78
3
102
33
27
18
20
1.96
36677--36753
20
3.8
20
77
3
91
38
22
22
16
1.93
36656--36749
41
2.3
41
98
0
179
36
24
20
19
1.95
37161--37194
12
2.9
12
91
4
52
58
0
2
38
1.13
43234--43437
75
2.7
76
87
3
279
20
24
31
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44027--44070
17
2.6
17
85
7
63
56
29
0
13
1.38
44020--44072
9
6.5
8
77
18
56
60
26
0
13
1.33
45993--46053
21
2.9
21
73
9
70
13
24
40
21
1.88
45993--46055
20
3.0
20
76
4
63
12
25
39
22
1.89
51811--52004
73
2.6
76
84
7
256
20
24
31
23
1.98
57576--57748
75
2.3
75
85
5
217
30
15
22
31
1.94
59093--59166
22
3.4
22
82
0
85
36
14
14
33
1.88
59832--60432
46
13.0
46
91
4
917
24
21
19
34
1.96
59832--60542
184
3.9
184
88
5
1001
24
21
19
34
1.96
60449--60542
45
2.1
45
100
0
188
23
24
19
32
1.97
62269--62305
18
2.1
19
85
10
51
45
0
0
54
1.00
63839--63889
24
2.1
24
85
10
68
43
1
11
43
1.52
64976--65015
2
20.0
2
100
0
80
50
0
0
50
1.00
67986--68097
3
38.0
3
79
10
124
60
1
0
37
1.07
67987--68094
11
8.9
12
76
17
91
60
1
0
37
1.08
68226--69069
76
11.4
76
91
6
1398
35
21
20
22
1.96
68226--69069
299
2.8
300
93
5
1436
35
21
20
22
1.96
68226--69069
447
1.9
438
92
5
1423
35
21
20
22
1.96

Tables:   1

The End!