Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008832.1 Hibiscus syriacus cultivar Beakdansim tig00112023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67441
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:7368 original size:77 final size:77
Alignment explanation
Indices: 7179--7370 Score: 284
Period size: 76 Copynumber: 2.5 Consensus size: 77
7169 GTTGTACAAT
* * *
7179 GGGGGAATCGGTACCCCCT-TGGGGGGG-ATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAGC
1 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGC
**
7242 AAAACTGTTTAG
66 AAAACCATTTAG
* *
7254 GGGGGAATCGGTTCCTCCTAT-GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGGC
1 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAG-
7318 CAAAACCATTTA-
65 CAAAACCATTTAG
7330 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTC
1 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTC
7371 TGAGTAATAT
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
75 23 0.22
76 54 0.51
77 29 0.27
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.23
Consensus pattern (77 bp):
GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGC
AAAACCATTTAG
Found at i:13134 original size:75 final size:75
Alignment explanation
Indices: 12976--13148 Score: 217
Period size: 75 Copynumber: 2.3 Consensus size: 75
12966 ATTAACAAGA
** * * *
12976 AGCAAATGTTGGGGCATACTAAAAGCCCCTCTTAATCAGAATCATGAATGTTGATGTATTTTGAA
1 AGCAAATGTTGGGGCATGTTGAAAGCCCCTCTTAATCAGAATCAAGAATGTTGACGTATTTTGAA
13041 CATCTATATC
66 CATCTATATC
*
13051 AGCAAATGTTGGGGCATGTTGAAAGCCCCT-TTCAATCAGAATGAAGAATGTTGACGTATTTTG-
1 AGCAAATGTTGGGGCATGTTGAAAGCCCCTCTT-AATCAGAATCAAGAATGTTGACGTATTTTGA
* *
13114 A-ATGCTTGTATT
65 ACAT-C-TATATC
*
13126 AGCCAATGTTGGGGCATGTTGAA
1 AGCAAATGTTGGGGCATGTTGAA
13149 GGCCTATATC
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
73 2 0.02
74 4 0.05
75 80 0.93
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (75 bp):
AGCAAATGTTGGGGCATGTTGAAAGCCCCTCTTAATCAGAATCAAGAATGTTGACGTATTTTGAA
CATCTATATC
Found at i:14524 original size:22 final size:22
Alignment explanation
Indices: 14499--14572 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 22
14489 TATACTTTTT
* * *
14499 AAAGACGATAGACTCTTTCTTC
1 AAAGATGATAGACTATCTCTTC
* *
14521 AAAGATGATAGCCTATCTCTTT
1 AAAGATGATAGACTATCTCTTC
* *
14543 AAAGATGATAGATTATCTTTTC
1 AAAGATGATAGACTATCTCTTC
14565 AAAGATGA
1 AAAGATGA
14573 AAGCTTTATG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (22 bp):
AAAGATGATAGACTATCTCTTC
Found at i:15396 original size:46 final size:46
Alignment explanation
Indices: 15246--15850 Score: 935
Period size: 46 Copynumber: 13.0 Consensus size: 46
15236 CTATTTCTCA
*
15246 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTTGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAAAACCTTCGGGT
15294 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAAAACCTTCGGGT
*
15342 CATCTGTAAGTCCTTCAGTACATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
15388 CATTTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
15434 CATCTGTAATTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAAAACCTTCGGGT
* *
15482 CATTTGTAAGTCCTTCAGTGCATGATGTTTTTAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
15528 CATCTTTAAGTCCTTCAGTGCATGATGTTTTTAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
15574 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
15620 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAAAACCTTCGGGT
* * * *
15668 CATCTGTAAGTCCTTTAGTGCATTATG-TTTCAAAAGCCTTCGGTT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
15713 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAAAACCTTCGGGT
*
15760 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAACCTTCGGGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* * * * *
15805 CATCCGTAAGCCCTGCAGTGCAGGATGTTTTGAAAAAGCCTTCGGG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA-CCTTCGGG
15851 GAGCTTTTTG
Statistics
Matches: 523, Mismatches: 26, Indels: 17
0.92 0.05 0.03
Matches are distributed among these distances:
45 77 0.15
46 230 0.44
47 56 0.11
48 160 0.31
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (46 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
Found at i:15454 original size:140 final size:139
Alignment explanation
Indices: 15246--15850 Score: 955
Period size: 140 Copynumber: 4.3 Consensus size: 139
15236 CTATTTCTCA
*
15246 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTTGGGTCATCTGTAAGTCCTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAAAACCTTCGGGTCATCTGTAAGTCCTTCA
*
15311 GTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTACATGATGTTTTCAA
64 GTGCATGATGTTTTC-AAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAA
15376 AAACCTTCGGGT
128 AAACCTTCGGGT
* *
15388 CATTTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAATTCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
* *
15453 GCATGATGTTTTCAAAAAAACCTTCGGGTCATTTGTAAGTCCTTCAGTGCATGATGTTTTTAAAA
66 GCATGATGTTTTC-AAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAA
15518 ACCTTCGGGT
130 ACCTTCGGGT
* *
15528 CATCTTTAAGTCCTTCAGTGCATGATGTTTTTAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
15593 GCATGATGTTTTC-AAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA
66 GCATGATGTTTTCAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTC--AAA
15657 AACCTTCGGGT
129 AACCTTCGGGT
* * * * *
15668 CATCTGTAAGTCCTTTAGTGCATTATG-TTTCAAAAGCCTTCGGTTCATCTGTAAGCCCTTCAGT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
*
15732 GCATGATGTTTTCAAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA
66 GCATGATGTTTTCAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA
15796 CCTTCGGGT
131 CCTTCGGGT
* * * * *
15805 CATCCGTAAGCCCTGCAGTGCAGGATGTTTTGAAAAAGCCTTCGGG
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA-CCTTCGGG
15851 GAGCTTTTTG
Statistics
Matches: 429, Mismatches: 29, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
137 34 0.08
138 51 0.12
139 53 0.12
140 260 0.61
142 31 0.07
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (139 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGT
GCATGATGTTTTCAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA
CCTTCGGGT
Found at i:15569 original size:26 final size:26
Alignment explanation
Indices: 15493--15569 Score: 67
Period size: 26 Copynumber: 3.2 Consensus size: 26
15483 ATTTGTAAGT
15493 CCTTCAGTGCATGATGTTTTTAAAAA
1 CCTTCAGTGCATGATGTTTTTAAAAA
* * * **
15519 CCTTC-G-G-GTCA--TCTTT-AAGT
1 CCTTCAGTGCATGATGTTTTTAAAAA
15539 CCTTCAGTGCATGATGTTTTTAAAAA
1 CCTTCAGTGCATGATGTTTTTAAAAA
15565 CCTTC
1 CCTTC
15570 GGGTCATCTG
Statistics
Matches: 35, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
20 7 0.20
21 5 0.14
22 1 0.03
23 4 0.11
24 1 0.03
25 5 0.14
26 12 0.34
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.39
Consensus pattern (26 bp):
CCTTCAGTGCATGATGTTTTTAAAAA
Found at i:15593 original size:186 final size:186
Alignment explanation
Indices: 15246--15960 Score: 1002
Period size: 186 Copynumber: 3.9 Consensus size: 186
15236 CTATTTCTCA
*
15246 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTTGGGTCATCTGTAAGTCCTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCA
* * * *
15311 GTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTACATGATGTTTTCAA
66 GTGCATGATGTTTT--TAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAA
* *
15376 AAACCTTCGGGTCATTTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
129 AAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* *
15434 CATCTGTAATTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATTTGTAAGTCCTTCA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCA
* *
15499 GTGCATGATGTTTTTAAAAACCTTCGGGTCATCTTTAAGTCCTTCAGTGCATGATGTTTTTAAAA
66 GTGCATGATGTTTTTAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAA
*
15564 ACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
131 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
*
15620 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTTA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCA
* * * * *
15685 GTGCATTATG-TTTCAAAAGCCTTCGGTTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
66 GTGCATGATGTTTTTAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTT-TAAA
15749 AACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAACCTTCGGGT
130 AACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
* * * * * *
15805 CATCCGTAAGCCCTGCAGTGCAGGATGTTTT-GAAAAAGCCTTCGGG------G--AG--CTT--
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCA
* * * * *
15857 -T--TTGAT-ATTATCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATG-TTTTCAAA
66 GTGCATGATGTTTTTAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAA
15917 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAA
131 ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAA
15961 CATTTCCATC
Statistics
Matches: 490, Mismatches: 34, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
167 45 0.09
168 4 0.01
169 43 0.09
171 1 0.00
174 3 0.01
176 2 0.00
178 1 0.00
184 13 0.03
185 84 0.17
186 218 0.44
188 76 0.16
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (186 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAAACCTTCGGGTCATCTGTAAGTCCTTCA
GTGCATGATGTTTTTAAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAA
ACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAACCTTCGGGT
Found at i:15918 original size:45 final size:45
Alignment explanation
Indices: 15867--15960 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
15857 TTTGATATTA
15867 TCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
1 TCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
15912 TCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
1 TCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
15957 TCAA
1 TCAA
15961 CATTTCCATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (45 bp):
TCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
Found at i:17743 original size:17 final size:19
Alignment explanation
Indices: 17707--17743 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
17697 CATGAAATAC
17707 AATATTATAATTTTATAAT
1 AATATTATAATTTTATAAT
*
17726 AATATT-TATTTTTA-AAT
1 AATATTATAATTTTATAAT
17743 A
1 A
17744 TCAAAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AATATTATAATTTTATAAT
Found at i:19349 original size:24 final size:24
Alignment explanation
Indices: 19299--19349 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
19289 ACTATTGTAA
19299 ATTAGAAGATAATTTTAATTTGAAT
1 ATTAGAAGATAA-TTTAATTTGAAT
*
19324 ATTAGTAAGATAA-TTACTTTGAAT
1 ATTAG-AAGATAATTTAATTTGAAT
19348 AT
1 AT
19350 GTCAATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 12 0.50
25 5 0.21
26 7 0.29
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (24 bp):
ATTAGAAGATAATTTAATTTGAAT
Found at i:20452 original size:2 final size:2
Alignment explanation
Indices: 20445--20484 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
20435 TAAAAGGTAC
20445 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20485 AACCAAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23545 original size:3 final size:3
Alignment explanation
Indices: 23537--23658 Score: 163
Period size: 3 Copynumber: 40.0 Consensus size: 3
23527 TTATTTATTA
*
23537 AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * *
23584 AAT AAT AAT AAT TAT AAT AAT AAT AAT ACT AAT ACT AAT AAT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
**
23632 AAT AAT AAT AAT TTT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
23659 TTTAAATGAA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
3 97 0.94
4 6 0.06
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:24070 original size:76 final size:76
Alignment explanation
Indices: 23790--24655 Score: 1585
Period size: 76 Copynumber: 11.4 Consensus size: 76
23780 GAAACGTTGA
23790 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATC-AAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
23854 AGGCTTTTTGG
66 AGGCTTTTTGG
*
23865 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG-AAACATC-AAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
*
23928 CGGCTTTTTGG
66 AGGCTTTTTGG
*
23939 AAACATCATGCACTGGAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTGAAAACATCAAAAAGCTCCCG
*
24004 AAAGCTTTTTGG
65 AAGGCTTTTTGG
24016 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24081 AGGCTTTTTGG
66 AGGCTTTTTGG
24092 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTGAAAACATCAAAAAGCTCCCG
24157 AAGGCTTTTTGG
65 AAGGCTTTTTGG
*
24169 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24234 AGGCTTTTTGG
66 AGGCTTTTTGG
24245 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTGAAAACATCAAAAAGCTCCCG
24310 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
24322 AAACATCATGCATTGAAGGACTTACAAATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24387 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
24398 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACCTCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24463 AGGCTTTTTGG
66 AGGCTTTTTGG
24474 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24539 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
24550 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACCTCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
24615 AGGCTTTTTGG
66 AGGCTTTTTGG
24626 AAACATCATGCACTGAAGGACTTACAGATG
1 AAACATCATGCACTGAAGGACTTACAGATG
24656 TGAGAAATAG
Statistics
Matches: 766, Mismatches: 20, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
74 67 0.09
75 47 0.06
76 444 0.58
77 208 0.27
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (76 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:24515 original size:152 final size:153
Alignment explanation
Indices: 23790--24655 Score: 1591
Period size: 153 Copynumber: 5.7 Consensus size: 153
23780 GAAACGTTGA
23790 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-TTTTGAAAACATC-AAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
*
23853 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG-AAACATC-
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
*
23916 AAAAGCTCCCGACGGCTTTTTGG
131 AAAAGCTCCCGAAGGCTTTTTGG
*
23939 AAACATCATGCACTGGAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
*
24004 AAAGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
24069 AAAAGCTCCCGAAGGCTTTTTGG
131 AAAAGCTCCCGAAGGCTTTTTGG
24092 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
*
24157 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCA
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
24222 AAAAGCTCCCGAAGGCTTTTTGG
131 AAAAGCTCCCGAAGGCTTTTTGG
24245 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
* *
24310 AAGGCTTTTTGGAAACATCATGCATTGAAGGACTTACAAATGACCCGAAGGTTTTGAAAACATCA
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
24375 AAAAGCTCCCGAAGGCTTTTTGG
131 AAAAGCTCCCGAAGGCTTTTTGG
* *
24398 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-ATTTGAAAACCTCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
24462 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
24527 AAAAGCTCCCGAAGGCTTTTTGG
131 AAAAGCTCCCGAAGGCTTTTTGG
* *
24550 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGG-ATTTGAAAACCTCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
24614 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
66 AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
24656 TGAGAAATAG
Statistics
Matches: 699, Mismatches: 14, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
149 38 0.05
150 13 0.02
151 65 0.09
152 222 0.32
153 361 0.52
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (153 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTTGAAAACATCAAAAAGCTCCCG
AAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGTTTTGAAAACATCA
AAAAGCTCCCGAAGGCTTTTTGG
Found at i:25356 original size:22 final size:22
Alignment explanation
Indices: 25331--25385 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
25321 CATAAAGCTT
25331 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
25353 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
25375 TCATCTTTGAA
1 TCATCTTTGAA
25386 GAGTGTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:28013 original size:83 final size:83
Alignment explanation
Indices: 27874--28055 Score: 294
Period size: 83 Copynumber: 2.2 Consensus size: 83
27864 TCTACTATGA
* * * *
27874 GCAAATTCATCTTCCAAATTTAATGATTGGTTTTGTCAAACCAGATCAGATAACTCAAAGAACAC
1 GCAAATTTATCTTCTAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAACAC
27939 TTCCAGAAGATGATATTG
66 TTCCAGAAGATGATATTG
*
27957 GCAAATTTATCTTCTGAATTCAATGATTGGTTCTGTTC-AACCAGATCAGATAACTCAAAGAACA
1 GCAAATTTATCTTCTAAATTCAATGATTGGTTCTG-TCAAACCAGATCAGATAACTCAAAGAACA
*
28021 CTTCCAGAAGATGCTATTG
65 CTTCCAGAAGATGATATTG
28040 GCAAATTTATCTTCTA
1 GCAAATTTATCTTCTA
28056 GTTAATGTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
83 89 0.98
84 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (83 bp):
GCAAATTTATCTTCTAAATTCAATGATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAACAC
TTCCAGAAGATGATATTG
Found at i:37190 original size:3 final size:3
Alignment explanation
Indices: 37182--37315 Score: 187
Period size: 3 Copynumber: 44.0 Consensus size: 3
37172 TTATTTATTA
*
37182 AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
* * *
37229 AAT AAT AAT AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT ACT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* **
37277 AAT AAT AAT ACT AAT AAT AAT AAT TTT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37316 TTTAAATGAA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
3 109 0.95
4 6 0.05
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:54983 original size:19 final size:17
Alignment explanation
Indices: 54919--54989 Score: 52
Period size: 19 Copynumber: 3.8 Consensus size: 17
54909 GGAAAAAAAG
* *
54919 AAATAAAGACTAAAATA
1 AAATAAAAAATAAAATA
54936 AATCAGTAAATAAATAAAAATA
1 AA--A-TAAA-AAAT-AAAATA
*
54958 AATTAAAGAAATAAAATGA
1 AAATAAA-AAATAAAAT-A
54977 AAATAAAAAATAA
1 AAATAAAAAATAA
54990 TAAAGGAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
17 2 0.05
18 11 0.26
19 16 0.37
20 4 0.09
21 2 0.05
22 8 0.19
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.20
Consensus pattern (17 bp):
AAATAAAAAATAAAATA
Found at i:54994 original size:29 final size:31
Alignment explanation
Indices: 54943--55012 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
54933 ATAAATCAGT
*
54943 AAAT-AAAT-AAAAATAAATTAAA-GAAATA
1 AAATAAAATAAAAAATAAATTAAAGGAAAAA
54971 AAATGAAAATAAAAAAT-AA-TAAAGGAAAAA
1 AAAT-AAAATAAAAAATAAATTAAAGGAAAAA
*
55001 AAATTAAATAAA
1 AAATAAAATAAA
55013 TCAAAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 4 0.11
29 11 0.31
30 15 0.42
31 6 0.17
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.19
Consensus pattern (31 bp):
AAATAAAATAAAAAATAAATTAAAGGAAAAA
Found at i:55010 original size:19 final size:20
Alignment explanation
Indices: 54988--55026 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
54978 AATAAAAAAT
*
54988 AATAAAGGAAAAAAA-ATTA
1 AATAAAGCAAAAAAATATTA
*
55007 AATAAATCAAAAAAATATTA
1 AATAAAGCAAAAAAATATTA
55027 TTTAAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (20 bp):
AATAAAGCAAAAAAATATTA
Found at i:56126 original size:6 final size:7
Alignment explanation
Indices: 56109--56134 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
56099 ATTGGACCTG
56109 AAAAAAC
1 AAAAAAC
56116 AAAAAAC
1 AAAAAAC
56123 AAAAAAC
1 AAAAAAC
56130 AAAAA
1 AAAAA
56135 TAAGTGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:56230 original size:38 final size:38
Alignment explanation
Indices: 56164--56384 Score: 245
Period size: 38 Copynumber: 5.9 Consensus size: 38
56154 TATAAAAATG
*
56164 TTTT-AAAACTATACAATATATA--TTTTAAAAACTAA
1 TTTTAAAAACTATATAATATATATTTTTTAAAAACTAA
* *
56199 TTTTCAAATCTATATAATATATATTTTTTAAAAACTAA
1 TTTTAAAAACTATATAATATATATTTTTTAAAAACTAA
* * *
56237 TTTTTAAAACTATATAATATATATTTTTTTAAAATTAA
1 TTTTAAAAACTATATAATATATATTTTTTAAAAACTAA
* * *
56275 TTTTAAAAACTATATAATATATAAATGTTTTCAAAA-T-G
1 TTTTAAAAACTATATAATATAT--ATTTTTTAAAAACTAA
* * * **
56313 TTTTCAAAACTATATATTATATATATTTTAAAAACATTT
1 TTTTAAAAACTATATAATATATATTTTTTAAAAAC-TAA
*
56352 TTTTAAAAACTATATAATATATATTTTTGAAAA
1 TTTTAAAAACTATATAATATATATTTTTTAAAA
56385 TCATTTTCTG
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
35 4 0.03
36 26 0.16
38 89 0.56
39 30 0.19
40 10 0.06
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.46
Consensus pattern (38 bp):
TTTTAAAAACTATATAATATATATTTTTTAAAAACTAA
Found at i:56313 original size:11 final size:11
Alignment explanation
Indices: 56297--56321 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
56287 TATAATATAT
56297 AAATGTTTTCA
1 AAATGTTTTCA
56308 AAATGTTTTCA
1 AAATGTTTTCA
56319 AAA
1 AAA
56322 CTATATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATGTTTTCA
Found at i:56420 original size:2 final size:2
Alignment explanation
Indices: 56400--56444 Score: 58
Period size: 2 Copynumber: 23.0 Consensus size: 2
56390 TTCTGAAAAT
*
56400 TA TA TA T- TA TA T- TA CTA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
56441 TA TA
1 TA TA
56445 ATAAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 2 0.05
2 34 0.89
3 2 0.05
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:57240 original size:165 final size:162
Alignment explanation
Indices: 57007--58416 Score: 1368
Period size: 165 Copynumber: 8.5 Consensus size: 162
56997 TTATTGACAA
* * * * * * * *
57007 ATAACCCTTCTTGCCTTGAGTTATTCTGTAAATGATGTGCCCTTGAAGTTGAGTGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TG-CCTTGGAGCTGAGCGTAGTCGAACT
* * * * * *
57072 CGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGGTGTGCCCTCG
63 CGAAGGTC-TTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCG
* *
57137 AAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAG
127 AAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAG
* * *
57173 ATAGCCCTTCTCGGCTTAAGCTATGCTGCAAATGATGCACATTGGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGC-C-TTGGAGCTGAGCGTAGTCGAACTC
* * * * *
57238 GAAGGTTTTTGGTTGGTAGATAACCCTTCTCGATTTAAGTTATGCTGTAAATGATATG-CCTTGG
64 GAAGGTCTTTGG-TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
* *
57302 AGCTGAGCATAGTCGAACTCGAAGGTCTTTGGTGACAG
128 AGCTGAGCGTAGTCGAACTCGAGGGTCTTT-G-G-CAG
* * * * * * * * *
57340 ATAACCCTTCTAGCCTTGAGTTATACTGTAAATAATGTGCCCTCGAAGCTGAGCGTAGTTGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TG-CCTTGGAGCTGAGCGTAGTCGAACT
* * * * * * *
57405 CG-AGGGC-TT--TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATG-TCTTGG
63 CGAAGGTCTTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
* * * *
57465 AGTTGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGCAG
128 AGCTGAGCGTAGTCGAACTC-GAGG-GTCT--TTGGCAG
** * *
57504 ATAACCCTTCTCGACTTAAGTTATGCTATAAATGATATGCTTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * *
57569 GAAGGTCTTTTGGTGACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGA
64 GAAGGTC-TTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
**
57634 AGCTGAGCGTAGTCGAACTCGAGATTCTTTGGCAG
128 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAG
* * * * *
57669 ATAGCCCTTCTCGACTTAAGCTGTGCTGCAAATGATGTGTCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * * *
57734 GAAGGTATTTGGTTGGCAGATAACCCTTCTCGACTTATGTTATGCTGCAAATGATATACCTTAG-
64 GAAGGTCTTTGG-TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
* * *
57798 AGCTGAGCGTAGTCGAACTCGAAGGACTTTTGGTGATAG
128 AGCTGAGCGTAGTCGAACTCGAGGGTC-TTT-G-G-CAG
* * * * * *
57837 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TG-CCTTGGAGCTGAGCGTAGTCGAACT
* * ** * *
57902 CGAGGGTCTTTGGT---AGATAACCCTTCTCGACTTAAGATATGCTACAAATGATATG-CCTTGG
63 CGAAGGTCTTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
* * * *
57963 AGCTGAGCGTAGTCAAACTCGAAGGTATTTGGTTGGCAT
128 AGCTGAGCGTAGTCGAACTCG-AGG-GTCT--TTGGCAG
*
58002 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * * * * *
58067 GAAGGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTCTAAATGATGTGCCCTCGA
64 GAAGGTC-TTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
* * *
58132 AGCTGAGCGTAGTTGAACTCAAGGGTCTTTGGTAG
128 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAG
* *
58167 ATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCTTGGAGCTGAGCGTAGTCGAACTC
* * * *
58232 GAAGGTCTTTGGTTGGCAGATAACCTTTCTCGATTTAAGTTATGCTGAAAATGATGTGCCCTCGA
64 GAAGGTCTTTGG-TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGA
*
58297 AGCTGAGCGTAGTCGAACTCGAGGGTTTTTGGCAG
128 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAG
* * * * *
58332 ATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCTTGGTCAAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCTTGGAGCTGAGCGTAGTCGAACTC
58397 GAAGGTC-TTGGTGGCAGATA
64 GAAGGTCTTTGGTGGCAGATA
58417 GCTCTTCTGG
Statistics
Matches: 1023, Mismatches: 175, Indels: 95
0.79 0.14 0.07
Matches are distributed among these distances:
163 97 0.09
164 146 0.14
165 483 0.47
166 40 0.04
167 43 0.04
168 134 0.13
169 79 0.08
170 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (162 bp):
ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGCCTTGGAGCTGAGCGTAGTCGAACTCGA
AGGTCTTTGGTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCCTCGAAGC
TGAGCGTAGTCGAACTCGAGGGTCTTTGGCAG
Found at i:57282 original size:84 final size:83
Alignment explanation
Indices: 57007--58416 Score: 1190
Period size: 84 Copynumber: 17.0 Consensus size: 83
56997 TTATTGACAA
* * * * * * * *
57007 ATAACCCTTCTTGCCTTGAGTTATTCTGTAAATGATGTGCCCTTGAAGTTGAGTGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCCTTGGAGCTGAGCGTAGTCGAACT
*
57072 CGAAGGTCTTTTGG-TGACAG
64 CGAAGGT-TTTTGGTTGGCAG
* * * * * * * * *
57092 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGGTGTGCCCTCGAAGCTGAGTGTAATCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAAT-G-ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57157 CG-AGG-GTCT--TTGGCAG
64 CGAAGGTTTTTGGTTGGCAG
* * * *
57173 ATAGCCCTTCTCGGCTTAAGCTATGCTGCAAATGATGCACATTGGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGC-CCTTGGAGCTGAGCGTAGTCGAACTC
*
57238 GAAGGTTTTTGGTTGGTAG
65 GAAGGTTTTTGGTTGGCAG
* * *
57257 ATAACCCTTCTCGATTTAAGTTATGCTGTAAATGATATG-CCTTGGAGCTGAGCATAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57321 CGAAGGTCTTTGG-TGACAG
64 CGAAGGTTTTTGGTTGGCAG
* * * * * * * * *
57340 ATAACCCTTCTAGCCTTGAGTTATACTGTAAATAATGTGCCCTCGAAGCTGAGCGTAGTTGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCCTTGGAGCTGAGCGTAGTCGAACT
**
57405 CG-AGG--GCT--TTGGCAG
64 CGAAGGTTTTTGGTTGGCAG
* * * *
57420 ATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATG-TCTTGGAGTTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57484 CAAAGGTATTTGGTTGGCAG
64 CGAAGGTTTTTGGTTGGCAG
** * *
57504 ATAACCCTTCTCGACTTAAGTTATGCTATAAATGATATG-CTTTAGAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57568 CGAAGGTCTTTTGG-TGACAT
64 CGAAGGT-TTTTGGTTGGCAG
* * * * * *
57588 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57653 CG-A-GATTCT--TTGGCAG
64 CGAAGGTTTTTGGTTGGCAG
* * * ** *
57669 ATAGCCCTTCTCGACTTAAGCTGTGCTGCAAATGATGTGTCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATG-CCCTTGGAGCTGAGCGTAGTCGAACTC
*
57734 GAAGGTATTTGGTTGGCAG
65 GAAGGTTTTTGGTTGGCAG
* ** *
57753 ATAACCCTTCTCGACTTATGTTATGCTGCAAATGATATACCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAT-GCCCTTGGAGCTGAGCGTAGTCGAACTC
* **
57818 GAAGGACTTTTGG-TGATAG
65 GAAGG-TTTTTGGTTGGCAG
* * * * * *
57837 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57902 CGAGGGTCTTTGG-T---AG
64 CGAAGGTTTTTGGTTGGCAG
* * *
57918 ATAACCCTTCTCGACTTAAGATATGCTACAAATGATATG-CCTTGGAGCTGAGCGTAGTCAAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
* *
57982 CGAAGGTATTTGGTTGGCAT
64 CGAAGGTTTTTGGTTGGCAG
*
58002 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CCTTAGAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
*
58066 CGAAGGTCTTTTGG-TGACAG
64 CGAAGGT-TTTTGGTTGGCAG
* * * * * * *
58086 ATAACCCTTATAGCCTTGAGTTATGCT-CTAAATGATGTGCCCTCGAAGCTGAGCGTAGTTGAAC
1 ATAACCCTTCTCGACTTAAGTTATGCTGC-AAATGA--TGCCCTTGGAGCTGAGCGTAGTCGAAC
*
58150 TC-AAGGGTCTTTGG-T---AG
63 TCGAA-GGTTTTTGGTTGGCAG
* * *
58167 ATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATG-CCCTTGGAGCTGAGCGTAGTCGAACTC
*
58232 GAAGGTCTTTGGTTGGCAG
65 GAAGGTTTTTGGTTGGCAG
* * * * *
58251 ATAACCTTTCTCGATTTAAGTTATGCTGAAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA--TGCCCTTGGAGCTGAGCGTAGTCGAACT
*
58316 CG-AGG-GTTT--TTGGCAG
64 CGAAGGTTTTTGGTTGGCAG
* * * * *
58332 ATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATATG-CCTTGGAGCTGAGCTTGGTCAAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATG--ATGCCCTTGGAGCTGAGCGTAGTCGAACT
*
58396 CGAAGG-TCTTGG-TGGCAG
64 CGAAGGTTTTTGGTTGGCAG
58414 ATA
1 ATA
58417 GCTCTTCTGG
Statistics
Matches: 1085, Mismatches: 181, Indels: 121
0.78 0.13 0.09
Matches are distributed among these distances:
79 29 0.03
80 170 0.16
81 178 0.16
82 23 0.02
83 44 0.04
84 460 0.42
85 174 0.16
86 7 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (83 bp):
ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGCCCTTGGAGCTGAGCGTAGTCGAACTCG
AAGGTTTTTGGTTGGCAG
Found at i:57747 original size:249 final size:249
Alignment explanation
Indices: 57007--58446 Score: 2059
Period size: 249 Copynumber: 5.8 Consensus size: 249
56997 TTATTGACAA
* * * * * * *
57007 ATAACCCTTCTTGCCTTGAGTTATTCTGTAAATGATGTGCCCTT-GAAGTTGAGTGTAGTCGAAC
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATG-CCTTAG-AGCTGAGCGTAGTCGAAC
*
57071 TCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGGTGTGCCCTC
64 TCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTC
* * *
57136 GAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGGCTTAAGCTATGCTG
129 GAAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
** * * *
57201 CAAATGATGCACATTGGAGCTGAGCGTAGTCGAACTCGAAGGTTTTTGGTTGGTAG
194 CAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
* * *
57257 ATAACCCTTCTCGATTTAAGTTATGCTGTAAATGATATGCCTTGGAGCTGAGCATAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
* *
57322 GAAGGTC-TTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATAATGTGCCCTCGA
66 GAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
*
57386 AGCTGAGCGTAGTTGAACTCGAGGG-CTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
131 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * * *
57450 AATGATATGTCTTGGAGTTGAGCGTAGTCGAACTCAAAGGTATTTGGTTGGCAG
196 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
* *
57504 ATAACCCTTCTCGACTTAAGTTATGCTATAAATGATATGCTTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
* *
57569 GAAGGTCTTTTGGTGACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGA
66 GAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
** *
57634 AGCTGAGCGTAGTCGAACTCGAGATTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTGTGCTGCA
131 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* *
57699 AATGATGTGTCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
196 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
* * *
57753 ATAACCCTTCTCGACTTATGTTATGCTGCAAATGATATACCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
* *
57818 GAAGGACTTTTGGTGATAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
66 GAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
* * * *
57883 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGTAGATAACCCTTCTCGACTTAAGATATGCTACA
131 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * *
57948 AATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTATTTGGTTGGCAT
196 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
*
58002 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
* *
58067 GAAGGTCTTTTGGTGACAGATAACCCTTATAGCCTTGAGTTATGCTCTAAATGATGTGCCCTCGA
66 GAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
* * * *
58132 AGCTGAGCGTAGTTGAACTCAAGGGTCTTTGGTAGATAGCCCTTCTCGACTTAAGTTATGCTGCA
131 AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* *
58197 AATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAG
196 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
* * * * * *
58251 ATAACCTTTCTCGATTTAAGTTATGCTGAAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACT
1 ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAG-AGCTGAGCGTAGTCGAACT
* * * * * * * *
58316 CGAGGGT-TTTT-G-G-CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATATG-CCTTG
65 CGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCG
* * * * * * * * * *
58376 GAGCTGAGCTTGGTCAAACTCGAAGGTCTTGGTGGCAGATAGCTCTTCTGGCCTTGAGCTAAGCT
130 AAGCTGAGCGTAGTCGAACTCGAGGGTCTT--TGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
58441 GCAAAT
193 GCAAAT
58447 AGTTTGTTTA
Statistics
Matches: 1075, Mismatches: 109, Indels: 15
0.90 0.09 0.01
Matches are distributed among these distances:
245 27 0.03
246 34 0.03
247 183 0.17
248 152 0.14
249 620 0.58
250 59 0.05
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (249 bp):
ATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTC
GAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGA
AGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGTTGGCAG
Found at i:61003 original size:18 final size:18
Alignment explanation
Indices: 60980--61020 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
60970 AGCCATTTGA
60980 TCCTCTGG-TCGTGCTTGT
1 TCCTCTGGAT-GTGCTTGT
60998 TCCTCTGGATGTGCTTGT
1 TCCTCTGGATGTGCTTGT
61016 TCCTC
1 TCCTC
61021 GTGTGTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.02, C:0.29, G:0.24, T:0.44
Consensus pattern (18 bp):
TCCTCTGGATGTGCTTGT
Found at i:61619 original size:29 final size:30
Alignment explanation
Indices: 61550--61608 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
61540 AATTTAAGGC
61550 AAAATGGTTTTTGGACTTGAATTGAATTTAA
1 AAAAT-GTTTTTGGACTTGAATTGAATTTAA
61581 AAAATGTTTTTGGACTT-AATTGAATTTA
1 AAAATGTTTTTGGACTTGAATTGAATTTA
61609 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 11 0.39
30 12 0.43
31 5 0.18
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (30 bp):
AAAATGTTTTTGGACTTGAATTGAATTTAA
Found at i:61714 original size:21 final size:21
Alignment explanation
Indices: 61688--61786 Score: 105
Period size: 21 Copynumber: 4.7 Consensus size: 21
61678 AGGGTGTCAA
*
61688 AGTGCATCCATACACCCCTGC
1 AGTGCATCCATGCACCCCTGC
*
61709 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCACCCCTGC
*
61730 AATGCATCCATGCA--CCTGCAC
1 AGTGCATCCATGCACCCCTG--C
* *
61751 TAGTGCATCGATGCA-CCATGC
1 -AGTGCATCCATGCACCCCTGC
61772 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
61787 TAAAATACCG
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.06
20 13 0.20
21 34 0.52
22 12 0.18
23 3 0.05
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.21
Consensus pattern (21 bp):
AGTGCATCCATGCACCCCTGC
Found at i:61992 original size:21 final size:21
Alignment explanation
Indices: 61963--62002 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
61953 TTTTAGTAGA
61963 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCC-AACGGCTCC
*
61985 AAAA-CATCTCCAACGGCT
1 AAAATCATCCCCAACGGCT
62003 ATATACAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 6 0.35
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:63168 original size:19 final size:20
Alignment explanation
Indices: 63144--63191 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
63134 AATGATTTTC
*
63144 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
63163 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
63183 TTTTGAAAA
1 TTTTGAAAA
63192 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:64625 original size:21 final size:20
Alignment explanation
Indices: 64599--64697 Score: 119
Period size: 21 Copynumber: 4.8 Consensus size: 20
64589 AGGGTGTCAA
64599 AGTGCATCCATGCACCCCTGC
1 AGTGCATCCATGCA-CCCTGC
64620 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCA-CCCTGC
64641 AGTGCATCCATGCA-CCTGCAC
1 AGTGCATCCATGCACCCTG--C
* * *
64662 TAGTGCATCGATGCACCATGT
1 -AGTGCATCCATGCACCCTGC
64683 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
64698 TCAAACACCG
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.06
20 14 0.20
21 35 0.51
22 13 0.19
23 3 0.04
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.22
Consensus pattern (20 bp):
AGTGCATCCATGCACCCTGC
Found at i:64743 original size:20 final size:20
Alignment explanation
Indices: 64718--64805 Score: 113
Period size: 20 Copynumber: 4.3 Consensus size: 20
64708 AATGCAATTA
*
64718 GTGCATCGATGCATCCTTCT
1 GTGCATCGATGCATCCTGCT
** *
64738 GTGCATCGATGCATCAAGGTT
1 GTGCATCGATGCATC-CTGCT
*
64759 GTGCATCAATGCATCCTGCT
1 GTGCATCGATGCATCCTGCT
64779 GTGCATCGATGCATCCTGCT
1 GTGCATCGATGCATCCTGCT
*
64799 ATGCATC
1 GTGCATC
64806 CATGAACGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 42 0.74
21 15 0.26
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (20 bp):
GTGCATCGATGCATCCTGCT
Found at i:66521 original size:21 final size:22
Alignment explanation
Indices: 66490--66593 Score: 106
Period size: 23 Copynumber: 4.7 Consensus size: 22
66480 CAGAACCCTT
* * *
66490 AGGGGGTATCGATTCCCCT-AC
1 AGGGGGAATCGGTTCCCCTCAA
*
66511 GGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCC-TCAA
66534 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCGGTTCCCC-TCAA
66557 AGGGGGAAT-GGTTCCCCTTC-A
1 AGGGGGAATCGGTTCCCC-TCAA
* *
66578 AGGGGGTATCGATTCC
1 AGGGGGAATCGGTTCC
66594 TCTACACCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
21 24 0.33
22 17 0.23
23 32 0.44
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (22 bp):
AGGGGGAATCGGTTCCCCTCAA
Found at i:66550 original size:44 final size:42
Alignment explanation
Indices: 66490--66599 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 42
66480 CAGAACCCTT
*
66490 AGGGGGTATCGATTCCCCTACGGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGTATCGATTCCCCTACAGGGGGAAT-GGTTCCCCTTC-A
* * *
66534 AGGGGGAATCGGTTCCCCTTCAAAGGGGGAATGGTTCCCCTTCA
1 AGGGGGTATCGATTCCCC-T-ACAGGGGGAATGGTTCCCCTTCA
*
66578 AGGGGGTATCGATTCCTCTACA
1 AGGGGGTATCGATTCCCCTACA
66600 CCAAAAATGA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.04
43 1 0.02
44 32 0.57
45 12 0.21
46 9 0.16
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (42 bp):
AGGGGGTATCGATTCCCCTACAGGGGGAATGGTTCCCCTTCA
Found at i:66569 original size:22 final size:23
Alignment explanation
Indices: 66512--66593 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
66502 TTCCCCTACG
66512 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
66535 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
66558 GGGGGAAT-GGTTCCCCTTC-AA
1 GGGGGAATCGGTTCCCCTTCAAA
* *
66579 GGGGGTATCGATTCC
1 GGGGGAATCGGTTCC
66594 TCTACACCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
21 9 0.16
22 16 0.29
23 31 0.55
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.23
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTTCAAA
Done.