Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008834.1 Hibiscus syriacus cultivar Beakdansim tig00112028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48937

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3706--3763
30
1.9
30
86
6
82
81
0
12
6
0.88
4111--4148
18
2.1
18
90
0
58
31
5
5
57
1.43
4766--4832
22
3.0
22
84
4
64
40
13
10
35
1.79
4795--4843
22
2.2
22
96
0
89
32
16
12
38
1.86
5259--5803
123
4.5
123
89
2
769
39
15
19
25
1.90
5864--5896
17
1.9
17
93
0
57
51
6
18
24
1.68
6135--6208
3
25.0
3
85
8
89
39
0
0
60
0.97
6136--6206
23
3.0
23
83
2
97
39
0
0
60
0.97
7551--7584
18
1.9
18
88
5
52
35
0
0
64
0.94
7722--7754
15
2.1
16
88
5
50
42
3
0
54
1.15
7896--7979
43
1.9
44
95
2
152
40
1
3
54
1.25
8043--8084
19
2.3
19
91
4
68
47
0
2
50
1.14
10654--10726
27
2.7
28
77
8
80
52
0
1
46
1.09
14865--14932
3
22.7
3
93
0
118
33
1
1
63
1.13
16243--16291
19
2.7
18
87
9
73
16
4
6
73
1.19
17056--17103
18
2.7
18
78
9
55
27
0
2
70
0.98
17093--17129
15
2.7
15
88
12
53
27
5
5
62
1.39
27723--27782
11
5.5
10
76
18
57
81
0
13
5
0.84
27720--27782
22
2.9
21
79
15
65
80
0
12
6
0.88
28904--29389
165
2.9
166
95
1
868
28
13
21
36
1.91
28904--29389
82
5.9
83
95
0
843
28
13
21
36
1.91
30133--31137
113
8.9
113
96
0
1818
38
12
20
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31452--31514
3
20.7
3
93
3
108
33
0
1
65
1.03
32275--32325
23
2.2
23
100
0
102
5
21
56
15
1.60
32847--32895
19
2.7
18
87
9
73
16
4
6
73
1.19
32863--32904
19
2.2
19
83
8
50
23
2
4
69
1.20
32933--32967
12
2.8
13
91
8
56
42
0
0
57
0.99
36254--36285
2
16.0
2
100
0
64
50
0
0
50
1.00
36470--36512
20
2.3
19
88
11
70
23
30
9
37
1.86
36475--36512
20
1.9
20
100
0
76
23
28
10
36
1.88
48456--48491
18
2.1
17
94
5
63
63
2
0
33
1.08
48456--48519
18
3.3
18
71
24
51
64
3
0
32
1.10
48549--48594
10
4.6
10
91
0
74
47
0
32
19
1.50
48549--48598
20
2.5
20
96
0
91
44
0
32
24
1.54

Tables:   1

The End!