genome.fa.s8836.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008836.1 Hibiscus syriacus cultivar Beakdansim tig00112039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149069

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510--556	19	2.5	19	89	0	67	46	6	14	31	1.70
3768--3818	19	2.6	20	90	3	77	47	5	13	33	1.67
14412--14657	59	4.1	59	86	4	352	34	19	11	34	1.88
14412--14657	118	2.1	119	92	1	404	34	19	11	34	1.88
15004--15227	95	2.4	95	83	3	263	29	24	13	31	1.94
18146--18179	11	3.1	11	95	0	59	17	14	35	32	1.91
18611--18635	2	12.5	2	100	0	50	48	0	0	52	1.00
20669--20718	24	2.0	25	92	3	84	60	14	14	12	1.60
25213--25278	23	2.9	23	81	0	69	37	19	22	19	1.94
30907--30958	15	3.5	15	83	0	68	21	26	15	36	1.93
30892--30962	30	2.4	30	82	0	88	21	30	16	30	1.95
31337--31448	48	2.3	48	81	1	134	25	20	24	29	1.99
31576--31676	45	2.2	45	82	3	114	18	24	31	24	1.98
33461--33501	18	2.2	19	95	4	75	24	4	24	46	1.72
36784--36827	19	2.3	19	84	0	61	18	31	18	31	1.95
36831--36869	16	2.4	16	86	0	60	12	23	30	33	1.92
39809--39859	25	2.1	24	85	10	68	60	5	5	27	1.43
40157--40207	23	2.3	22	80	12	59	43	1	0	54	1.11
41075--41448	161	2.3	162	92	0	615	40	13	16	28	1.87
42598--43777	200	5.9	200	93	2	1966	36	14	17	31	1.91
42598--43777	398	3.0	398	93	2	1980	36	14	17	31	1.91
46681--47029	184	1.9	184	96	1	646	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50225--50265	20	2.0	20	100	0	82	9	9	14	65	1.46
50338--50378	19	2.2	19	95	0	73	14	12	12	60	1.58
50146--50475	113	3.0	112	95	2	592	26	13	14	45	1.81
50357--50560	92	2.2	92	93	0	347	28	12	14	44	1.82
50540--50581	22	1.9	22	95	0	75	11	9	11	66	1.44
50926--50994	24	2.9	25	79	18	76	52	2	1	43	1.25
51009--51081	14	5.3	14	67	8	51	49	1	1	47	1.18
51009--51081	28	2.6	28	74	6	78	49	1	1	47	1.18
51134--51377	87	2.8	87	92	0	398	32	15	9	42	1.80
51209--51259	23	2.2	23	89	0	75	35	21	5	37	1.78
53973--54012	21	1.9	21	89	0	62	40	10	12	37	1.77
56469--56496	4	7.0	4	100	0	56	75	0	0	25	0.81
57267--57317	19	2.6	20	90	3	77	43	5	15	35	1.71
60695--60751	5	11.8	5	79	20	68	0	19	0	80	0.71
60689--60752	18	3.4	18	81	12	76	1	18	0	79	0.81
61495--61545	19	2.6	20	90	3	77	43	5	15	35	1.71
63528--63560	2	16.5	2	100	0	66	51	48	0	0	1.00
65111--65145	18	1.9	18	94	0	61	11	14	28	45	1.79
80450--80550	33	3.1	33	82	0	112	20	18	22	37	1.94
82675--82723	18	2.6	18	80	6	53	28	28	20	22	1.98
82785--82884	44	2.3	45	86	6	134	31	20	21	28	1.98
82927--82983	21	2.7	21	100	0	114	29	26	24	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90022--90161	29	4.8	29	90	0	208	45	22	10	22	1.82
90169--90207	12	3.2	12	89	7	60	15	20	46	17	1.84
90169--90226	13	4.2	13	78	18	64	13	22	46	17	1.83
90187--90246	18	3.4	18	86	2	86	10	21	50	18	1.76
97468--97535	29	2.3	29	89	0	100	44	23	5	26	1.76
97520--97649	29	4.5	29	87	0	179	43	20	10	26	1.83
97491--97649	58	2.7	59	84	3	164	43	21	9	25	1.82
97652--97690	18	2.2	18	90	4	62	10	25	48	15	1.76
103921--103958	17	2.2	17	90	0	58	13	21	44	21	1.85
103916--103974	22	2.5	23	86	13	84	18	23	38	18	1.93
103962--104013	19	2.7	19	88	11	72	32	30	21	15	1.94
111186--111216	7	4.4	7	100	0	62	25	29	29	16	1.96
111213--111250	5	7.8	5	82	5	51	5	18	55	21	1.62
111199--111261	24	2.5	24	69	23	58	15	22	44	17	1.86
111247--111345	9	10.3	9	72	12	63	28	28	26	17	1.97
111218--111278	19	3.2	19	83	4	61	14	22	42	19	1.88
111244--111281	19	2.0	19	94	0	67	26	26	28	18	1.98
111249--111297	19	2.6	19	87	6	64	24	32	24	18	1.97
115941--115991	21	2.4	22	90	3	77	33	21	3	41	1.72
115978--116030	20	2.5	22	87	6	74	35	20	11	32	1.88
118400--118448	17	2.8	17	90	6	71	34	12	4	48	1.59
118790--118868	24	3.5	24	74	13	85	31	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118789--118874	44	2.0	44	92	0	145	30	18	16	34	1.93
121474--121503	14	2.1	14	93	0	51	66	0	0	33	0.92
128362--128403	16	2.6	16	100	0	84	47	7	26	19	1.74
128623--128653	8	3.9	8	100	0	62	51	0	35	12	1.40
129343--129544	95	2.1	95	83	1	253	35	12	23	28	1.91
129885--130118	54	4.3	54	84	2	290	31	19	20	28	1.97
132522--132562	16	2.5	17	84	11	59	36	17	0	46	1.48
141201--141256	17	3.3	17	100	0	112	12	23	46	17	1.82
141276--141324	21	2.4	20	83	12	64	30	24	24	20	1.98
148456--148482	7	3.9	7	100	0	54	29	29	25	14	1.95
148484--148540	5	10.6	5	78	14	60	7	22	50	19	1.71
148484--148540	27	2.1	27	100	0	114	7	22	50	19	1.71
148476--148541	17	4.3	17	73	25	74	12	22	46	18	1.81
148537--148616	19	4.2	18	72	13	61	30	26	26	17	1.97
148543--148617	9	7.7	10	78	11	68	30	26	24	18	1.98
148543--148616	29	2.5	29	86	6	96	31	27	24	17	1.97

Tables:   1

The End!