genome.fa.s8839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008839.1 Hibiscus syriacus cultivar Beakdansim tig00112043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172815

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3812--3916	3	36.3	3	81	7	128	64	0	0	34	1.00
8002--8072	35	2.0	35	97	0	133	32	5	15	46	1.69
15381--15420	18	2.3	18	91	4	64	45	0	7	47	1.31
15584--15649	15	4.4	15	88	0	96	39	6	16	37	1.74
15579--15665	45	2.0	44	93	2	147	42	6	17	33	1.76
15584--15665	30	2.8	30	90	1	121	40	7	17	35	1.77
15648--15717	20	3.5	20	96	0	131	40	10	14	35	1.79
15884--15948	28	2.3	27	82	15	78	50	1	1	46	1.20
15884--15981	31	3.2	32	76	15	84	51	2	1	45	1.19
15972--16050	31	2.5	32	82	14	92	50	1	1	46	1.17
16001--16044	22	2.0	23	81	4	54	54	2	0	43	1.12
15999--16050	16	3.2	16	74	15	54	55	1	0	42	1.10
16249--16368	42	2.9	42	93	0	204	44	16	20	18	1.87
30469--30528	14	4.4	14	68	4	50	46	0	0	53	1.00
32265--32312	21	2.3	21	88	0	69	25	41	12	20	1.87
32316--32409	21	4.5	21	89	5	145	19	34	25	21	1.96
32928--33032	34	3.1	34	88	0	147	57	4	2	35	1.35
33442--34422	128	7.7	128	94	0	1712	34	21	22	21	1.97
34500--34539	8	5.1	8	81	6	55	37	27	0	35	1.57
37525--37571	13	3.7	13	80	5	60	44	2	0	53	1.12
39788--39818	15	2.1	15	93	0	53	54	0	0	45	0.99
41982--42185	29	7.1	28	88	5	223	44	18	4	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42012--42183	57	3.0	58	87	3	240	44	18	4	32	1.70
42012--42183	86	2.0	87	85	5	233	44	18	4	32	1.70
42012--42183	29	6.0	29	91	5	233	44	18	4	32	1.70
42679--42760	21	4.0	21	80	4	78	28	4	10	56	1.54
42665--42745	41	2.0	41	82	7	101	24	4	9	60	1.48
49343--49746	29	14.0	29	90	4	455	45	17	3	33	1.66
50237--50324	21	4.2	21	81	4	81	27	4	10	57	1.51
50234--50315	41	2.0	41	83	4	103	25	4	9	59	1.49
51638--51772	70	1.9	70	98	0	261	39	16	15	28	1.89
61390--61423	14	2.4	14	100	0	68	44	17	0	38	1.49
62180--62241	11	5.5	11	73	7	52	24	24	22	29	1.99
63489--63550	7	9.0	7	82	3	72	19	1	37	41	1.61
63498--63557	27	2.2	28	90	3	95	20	1	31	46	1.60
63498--63557	14	4.4	14	75	12	61	20	1	31	46	1.60
63639--63749	20	5.4	20	83	6	116	19	1	31	46	1.60
63657--63749	7	13.4	7	68	6	55	19	0	31	49	1.49
63649--63753	14	7.6	14	69	14	56	18	0	31	49	1.54
65052--65086	18	1.9	18	88	0	52	48	0	2	48	1.16
65593--65633	20	2.0	22	85	9	59	48	0	0	51	1.00
69092--69385	147	2.0	146	99	0	579	32	19	15	32	1.93
69334--69439	52	2.0	53	96	3	196	29	26	17	26	1.98
71011--71037	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79717--79974	129	2.0	129	100	0	516	34	17	16	31	1.92
87344--87373	7	4.3	7	95	0	51	53	43	3	0	1.17
90744--92692	727	2.7	728	98	0	3699	34	17	15	32	1.91
107315--107339	13	1.9	13	100	0	50	16	8	20	56	1.65
113173--113212	21	1.9	21	94	0	71	45	2	0	52	1.14
117433--117476	17	2.5	18	96	3	81	22	11	38	27	1.88
118608--118637	13	2.3	13	94	0	51	56	0	13	30	1.37
119984--120084	39	2.6	40	80	9	111	50	0	12	35	1.47
125441--125484	2	22.0	2	100	0	88	50	0	0	50	1.00
126655--126815	80	2.0	80	98	0	313	38	13	18	29	1.89
132290--132336	2	23.0	2	91	4	76	46	0	2	51	1.13
139721--139764	20	2.2	20	95	0	79	25	0	27	47	1.52
139749--139807	22	2.8	21	82	12	59	27	0	25	47	1.52
140750--140796	22	2.1	22	84	7	60	42	4	2	51	1.33
143130--143281	63	2.3	64	79	9	157	47	8	3	40	1.50
144482--144526	24	1.9	23	86	4	63	48	15	22	13	1.79
144873--144910	15	2.4	16	86	4	51	47	5	7	39	1.55
147062--147188	60	2.1	59	78	5	130	37	8	21	32	1.84
154131--154163	2	17.0	2	87	6	50	48	0	3	48	1.17
154563--154628	32	2.1	32	85	5	89	45	16	4	33	1.68
156559--156599	2	20.5	2	100	0	82	48	0	0	51	1.00
157315--157391	31	2.5	31	89	0	118	46	10	9	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161952--161984	15	2.1	16	94	5	59	33	0	6	60	1.21
162571--162614	19	2.2	20	84	8	54	34	4	6	54	1.47
167943--167976	2	17.5	2	93	6	61	47	0	0	52	1.00

Tables:   1

The End!