genome.fa.s8841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008841.1 Hibiscus syriacus cultivar Beakdansim tig00112047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204746

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6168--6258	45	2.0	46	89	2	139	27	18	25	28	1.98
7176--7221	18	2.6	18	89	0	65	23	23	21	30	1.99
19337--19381	19	2.3	20	84	3	56	42	24	22	11	1.86
22984--23078	49	1.9	49	86	0	136	17	34	30	16	1.93
35416--35478	23	2.6	24	78	19	60	50	1	0	47	1.10
35450--35496	22	2.1	23	88	4	69	44	2	0	53	1.12
35444--35523	32	2.5	32	80	14	92	47	2	0	50	1.14
35576--35640	27	2.4	26	78	12	69	47	1	3	47	1.27
35676--35720	23	2.0	23	86	0	63	53	2	2	42	1.25
37998--38164	49	3.2	49	65	25	126	34	7	2	55	1.42
37960--38169	107	2.0	107	98	0	404	32	8	2	55	1.45
38634--38683	25	1.9	27	84	8	68	52	0	2	46	1.12
42055--42126	30	2.4	30	88	0	108	30	11	6	51	1.64
55784--55827	21	2.1	21	87	4	63	38	15	0	45	1.47
61582--61606	3	8.3	3	100	0	50	32	0	0	68	0.90
61920--61966	16	3.0	16	84	3	60	31	17	12	38	1.87
75027--75086	20	3.0	20	80	4	75	20	33	28	18	1.96
78148--78186	20	2.0	20	94	0	69	25	30	30	12	1.93
79317--79363	20	2.4	20	89	3	69	38	0	25	36	1.56
80861--80930	19	3.6	19	84	1	86	47	5	17	30	1.70
93917--93948	3	10.7	3	93	0	55	65	3	0	31	1.08
94293--94420	60	2.1	60	77	8	134	40	10	10	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95487--95581	27	3.5	27	88	0	145	1	27	36	34	1.64
95486--95591	27	3.9	27	81	4	115	1	25	39	33	1.67
96267--96405	69	2.0	69	94	0	242	12	27	17	42	1.86
96815--96844	15	2.0	15	93	0	51	20	30	13	36	1.90
101039--101146	45	2.4	44	86	9	139	37	20	30	11	1.87
105352--105402	26	2.0	26	92	0	84	39	13	15	31	1.87
106306--106353	24	2.0	25	87	4	71	37	0	0	62	0.95
106329--106365	17	2.2	17	90	0	56	45	0	0	54	1.00
111522--111647	64	2.0	65	85	1	173	32	19	16	30	1.94
119797--119827	15	2.1	15	93	0	53	29	0	29	41	1.56
120217--120287	19	3.7	19	100	0	142	22	39	16	21	1.92
120255--120399	64	2.2	65	85	1	193	31	22	16	28	1.96
127588--127643	27	2.0	28	93	3	96	55	10	23	10	1.65
141256--141287	15	2.1	15	94	0	55	34	0	6	59	1.23
141234--141305	36	2.0	36	91	5	119	37	0	9	52	1.34
141733--141765	15	2.1	16	94	5	59	33	9	27	30	1.88
160287--160339	21	2.5	21	72	6	54	20	22	18	37	1.94
160369--160441	21	3.5	21	79	3	76	23	21	17	36	1.94
160431--160484	20	2.6	21	82	5	74	38	16	22	22	1.93
161058--161098	19	2.2	19	86	0	55	51	21	14	12	1.75
161103--161243	19	7.8	19	75	17	140	11	23	19	45	1.83
161103--161235	52	2.5	53	92	2	214	11	23	21	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161153--161218	33	2.0	34	90	3	107	10	25	22	40	1.86
163387--163456	21	3.4	21	65	9	54	24	37	17	21	1.94
163335--163452	42	2.8	42	79	2	112	23	35	16	23	1.95
164810--164845	14	2.6	14	95	0	63	30	0	25	44	1.54
164986--165050	19	3.7	19	70	19	68	12	21	20	46	1.83
167346--167372	12	2.2	12	100	0	54	0	25	0	74	0.83
167547--167600	24	2.2	24	90	0	81	40	20	16	22	1.91
168406--168484	20	3.9	20	77	9	70	35	22	18	22	1.96
168444--168493	20	2.5	20	80	0	73	38	22	18	22	1.94
168707--168753	20	2.3	20	100	0	94	36	25	23	14	1.93
170823--170876	20	2.7	20	85	0	72	37	22	24	16	1.94
170863--170974	19	6.9	16	69	26	76	47	22	17	12	1.81
170912--170967	14	3.6	14	74	21	58	50	23	16	10	1.76
170863--170985	33	3.8	33	93	1	203	47	23	17	12	1.81
170892--170991	19	5.8	18	71	25	83	46	23	18	13	1.83
170981--171044	19	3.7	18	74	21	73	14	21	20	43	1.87
171028--171072	20	2.3	19	78	17	56	17	22	17	42	1.89
171559--171603	18	2.5	18	85	0	63	15	15	42	26	1.87
172923--172981	20	3.0	20	84	0	73	44	22	16	16	1.87
173261--173312	21	2.5	21	87	3	70	38	17	25	19	1.93
173301--173415	20	5.7	20	78	6	97	33	23	18	25	1.97
173298--173429	61	2.2	61	84	2	167	36	22	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174165--174200	18	2.0	18	94	0	63	52	13	11	22	1.72
184519--184699	74	2.4	74	87	5	231	24	18	27	29	1.98
187258--187312	28	2.0	27	82	3	65	30	7	23	38	1.82
187322--187397	20	3.6	20	76	11	71	32	18	25	23	1.97
192746--192858	54	2.1	55	93	1	192	23	20	23	32	1.98
193133--193164	12	2.7	12	95	0	55	34	56	3	6	1.40
194055--194115	30	2.1	29	90	3	95	32	14	9	42	1.79

Tables:   1

The End!