genome.fa.s8842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008842.1 Hibiscus syriacus cultivar Beakdansim tig00112048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52513

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2301--2353	21	2.5	21	72	6	54	20	22	18	37	1.94
2381--2452	20	3.5	21	77	7	76	23	22	18	36	1.95
3062--3102	19	2.2	19	86	0	55	51	21	14	12	1.75
3107--3239	52	2.5	53	91	3	207	11	24	21	43	1.84
3156--3221	33	2.0	34	90	3	107	10	25	22	40	1.86
3107--3239	19	7.5	19	76	17	117	11	24	21	43	1.84
4912--5094	91	2.0	90	90	4	287	23	12	16	46	1.81
5315--5403	42	2.1	42	80	0	106	22	37	15	24	1.93
6778--6813	14	2.6	14	95	0	63	30	0	25	44	1.54
9477--9530	24	2.2	24	90	0	81	40	20	16	22	1.91
10367--10416	20	2.5	20	80	0	73	38	22	18	22	1.94
10629--10675	20	2.3	20	100	0	94	36	25	23	14	1.93
12664--12711	24	1.9	24	83	8	60	54	10	12	22	1.68
12741--12794	20	2.7	20	85	0	72	37	22	24	16	1.94
12781--12907	19	7.8	16	71	24	88	45	22	18	13	1.84
12830--12885	14	3.6	14	74	21	58	50	23	16	10	1.76
12781--12901	33	3.8	33	93	3	203	47	23	17	12	1.81
12897--12960	19	3.7	18	74	21	73	14	21	20	43	1.87
12944--12988	20	2.3	19	78	17	56	17	22	17	42	1.89
13468--13512	18	2.5	18	85	0	63	15	15	42	26	1.87
15146--15197	21	2.5	21	87	3	70	38	17	25	19	1.93
15186--15300	20	5.7	20	78	6	97	33	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15183--15314	61	2.2	61	84	2	167	36	22	16	24	1.94
16046--16081	18	2.0	18	94	0	63	52	13	11	22	1.72
26322--26505	74	2.5	75	85	7	243	24	18	27	29	1.98
29048--29102	28	2.0	27	82	3	65	30	7	23	38	1.82
29112--29187	20	3.6	20	76	11	71	32	18	25	23	1.97
34531--34642	54	2.1	54	94	0	197	24	20	23	32	1.98
34916--34947	12	2.7	12	95	0	55	34	56	3	6	1.40
35837--35898	30	2.1	30	93	0	106	33	14	9	41	1.79
43604--43643	21	1.9	21	89	0	62	25	40	25	10	1.86
49792--49845	23	2.3	23	81	9	65	66	1	3	27	1.19

Tables:   1

The End!