genome.fa.s8843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008843.1 Hibiscus syriacus cultivar Beakdansim tig00112050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173107

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6355--6400	21	2.2	21	92	0	74	28	17	23	30	1.97
8148--8188	19	2.2	20	87	12	61	34	14	29	21	1.93
9525--9550	10	2.6	10	100	0	52	0	15	0	84	0.62
22874--22937	23	2.8	23	82	0	83	31	25	25	18	1.98
24487--24544	20	2.7	20	81	10	62	27	20	18	32	1.97
24532--24691	64	2.5	63	80	6	160	24	21	20	33	1.97
25495--25541	20	2.3	20	92	0	76	34	23	10	31	1.89
26851--26884	2	17.0	2	100	0	68	50	0	0	50	1.00
28173--28205	14	2.4	14	90	5	50	45	0	3	51	1.16
29663--29700	2	19.0	2	100	0	76	50	0	0	50	1.00
29835--29874	21	1.9	21	89	0	62	30	0	22	47	1.52
38910--38979	21	3.6	20	68	18	58	58	2	2	35	1.28
38915--38990	37	2.2	35	81	9	93	59	3	3	32	1.34
39128--39218	34	2.6	35	92	1	148	56	3	6	34	1.42
42464--42526	24	2.8	22	77	13	65	31	6	4	57	1.45
42535--42564	12	2.5	12	94	0	51	33	6	33	26	1.83
48318--48351	17	2.0	17	100	0	68	47	5	11	35	1.65
49403--49510	53	2.0	53	100	0	216	40	13	22	23	1.89
50000--50064	23	2.8	22	78	13	60	26	7	10	55	1.61
52792--53007	44	4.9	44	85	4	249	25	21	12	40	1.89
59872--60091	44	5.0	43	83	10	207	26	20	11	41	1.87
59908--60091	44	4.2	44	86	5	232	25	19	11	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61218--61281	33	1.9	33	93	0	110	28	15	28	28	1.96
61902--61948	20	2.4	19	83	13	60	44	4	17	34	1.68
63421--63472	20	2.6	20	84	6	61	36	19	15	28	1.92
66489--66797	39	7.7	39	77	10	277	41	15	7	35	1.75
66502--66733	126	1.8	127	85	2	333	42	15	7	34	1.76
66842--67019	39	4.5	39	80	5	189	41	15	8	35	1.77
67040--67155	39	3.0	39	81	9	123	43	9	9	37	1.70
67197--67533	58	5.8	57	82	7	342	42	13	6	37	1.70
67214--67591	175	2.1	178	79	9	402	43	13	6	36	1.70
67706--67857	45	3.4	45	79	4	157	42	17	7	33	1.76
70754--70808	21	2.6	21	94	0	101	45	12	29	12	1.79
73026--73106	27	3.0	27	100	0	162	11	29	14	44	1.80
75923--75971	24	1.9	25	88	12	73	14	8	4	73	1.21
84656--84682	6	4.5	6	100	0	54	37	0	0	62	0.95
92294--92353	13	4.4	14	71	23	56	40	3	6	50	1.45
92290--92368	40	2.0	40	94	0	140	39	5	5	50	1.46
93083--93145	33	1.9	33	83	6	83	30	17	22	30	1.96
94123--94184	24	2.6	23	82	5	70	33	24	4	37	1.77
96288--96315	14	2.0	14	100	0	56	50	0	0	50	1.00
97346--97379	17	1.9	18	94	5	61	32	0	0	67	0.91
97347--97392	23	2.0	23	87	8	67	30	2	0	67	1.03
99443--99476	3	11.3	3	87	0	50	38	29	29	2	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103378--103437	29	2.1	29	81	12	70	25	1	36	36	1.66
104159--104200	17	2.3	18	84	12	59	71	4	2	21	1.16
104756--104811	26	2.1	27	83	12	71	48	1	0	50	1.11
112607--112645	18	2.1	18	85	4	51	76	5	2	15	1.06
113071--113099	12	2.3	13	94	5	51	68	0	0	31	0.89
113245--113285	8	5.2	8	85	11	50	78	2	0	19	0.87
113250--113290	13	3.2	13	93	6	66	78	2	0	19	0.87
113240--113290	21	2.5	20	87	6	66	78	1	1	17	0.94
113254--113335	26	3.0	27	70	15	78	74	2	3	19	1.08
114682--114831	71	2.0	69	82	10	156	47	7	4	40	1.52
114683--114987	38	8.1	36	76	15	244	45	7	4	41	1.52
114838--114999	81	2.0	79	85	6	200	46	9	3	40	1.55
115164--115292	60	2.2	60	85	5	172	37	14	12	35	1.84
116690--116720	11	2.8	11	100	0	62	45	6	9	38	1.63
116665--116756	47	2.0	47	97	0	175	45	3	8	42	1.51
116700--116782	37	2.3	36	91	2	139	48	2	8	40	1.47
116747--116805	26	2.3	25	91	2	91	45	1	8	44	1.44
116711--116905	62	3.2	62	87	7	249	43	1	8	46	1.42
116811--116866	24	2.3	25	93	6	105	44	0	8	46	1.34
116836--116994	37	4.2	36	77	11	149	44	1	6	47	1.38
116712--116905	61	3.2	60	85	9	257	43	1	8	46	1.43
116975--117014	20	2.0	20	90	0	62	37	2	15	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118264--118324	5	11.4	5	78	16	61	18	3	0	78	0.88
118264--118324	17	3.8	16	81	18	81	18	3	0	78	0.88
118348--118430	35	2.3	36	83	8	107	13	4	3	78	1.05
118398--118443	18	2.4	19	82	7	58	10	4	2	82	0.89
118389--118443	19	2.8	20	81	10	69	9	5	1	83	0.86
118387--118445	30	2.0	30	83	9	77	10	5	1	83	0.88
121122--121156	18	1.9	18	94	0	61	17	20	34	28	1.95
121136--121185	23	2.2	23	89	7	75	26	18	24	32	1.97
124853--124894	17	2.7	15	82	13	50	26	2	2	69	1.13
124884--124944	16	4.0	15	72	6	52	44	0	1	54	1.10
129117--129311	55	3.6	53	84	8	198	29	24	16	29	1.96
129222--129670	51	8.9	51	88	5	621	27	26	16	29	1.97
129222--129670	103	4.4	102	87	6	621	27	26	16	29	1.97
129169--129670	154	3.3	152	84	7	630	28	26	15	29	1.96
130789--130843	19	3.1	19	75	15	64	5	14	0	80	0.89
130796--130936	24	6.1	23	72	21	93	8	14	0	76	1.01
130784--130887	33	3.2	33	73	18	94	7	15	0	76	0.99
130796--130915	34	3.4	32	75	20	98	9	14	0	76	1.01
130796--130916	50	2.5	50	78	17	121	9	14	0	76	1.00
130826--130868	16	2.8	15	83	13	52	6	16	0	76	0.99
131191--131528	170	2.0	168	96	3	626	31	26	14	27	1.95
153108--153201	46	2.0	46	95	0	170	37	18	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153763--153800	15	2.4	16	82	4	51	34	0	0	65	0.93
153734--153800	27	2.4	28	78	7	75	31	0	4	64	1.14
156035--156095	32	1.9	32	86	6	88	19	1	13	65	1.34
156036--156106	32	2.2	31	83	14	83	21	1	12	64	1.34
157811--157835	10	2.5	10	100	0	50	40	40	12	8	1.72
171739--171783	24	1.9	24	82	13	58	80	2	13	4	0.97
171768--171830	25	2.4	27	76	12	69	73	0	20	6	1.05
171772--171834	14	4.8	14	73	13	62	73	0	20	6	1.05
171763--171840	31	2.5	30	78	13	79	74	0	19	6	1.03
173008--173107	43	2.2	43	85	12	128	31	15	28	26	1.95

Tables:   1

The End!