genome.fa.s8846.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008846.1 Hibiscus syriacus cultivar Beakdansim tig00112053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75029

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4212--4278	31	2.2	31	83	2	82	43	8	23	23	1.82
4367--4401	18	1.9	18	100	0	70	45	20	5	28	1.73
5183--5222	20	2.0	20	90	4	64	42	35	10	12	1.76
10240--10279	19	2.1	19	85	4	53	25	22	15	37	1.93
10919--10958	21	2.0	20	90	5	62	45	15	12	27	1.82
12455--12613	57	2.8	57	87	0	237	27	17	22	32	1.96
12654--12697	20	2.2	20	95	0	79	22	15	22	38	1.92
14339--14377	20	2.0	20	100	0	78	30	15	20	33	1.94
14341--14386	20	2.3	20	92	0	74	30	15	21	32	1.94
14295--14454	77	2.1	78	85	5	218	28	15	21	35	1.94
14417--14504	20	4.3	20	72	2	86	23	17	22	36	1.94
14415--14528	61	1.9	60	87	1	156	25	15	21	36	1.93
15258--15326	23	3.0	23	84	0	84	27	23	27	21	1.99
16950--17021	20	3.6	20	81	5	83	43	19	16	20	1.89
17134--17214	41	2.0	41	90	4	128	37	19	17	25	1.94
17144--17229	20	4.2	21	72	8	61	41	16	16	25	1.88
17155--17230	20	3.8	20	74	6	64	39	17	17	26	1.91
17199--17236	20	1.9	20	94	0	67	47	15	13	23	1.81
17232--17415	57	3.2	57	90	0	287	34	21	16	27	1.95
17411--17476	21	3.2	21	75	12	73	25	9	24	40	1.84
17408--17472	20	3.2	20	78	4	76	24	10	27	36	1.89
17408--17496	41	2.2	41	91	0	142	24	11	25	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35796--35871	31	2.5	31	88	0	116	48	14	11	25	1.77
38359--38446	23	3.7	23	83	3	86	57	17	12	12	1.64
38542--38566	13	1.9	13	100	0	50	84	0	0	16	0.63
40386--40453	5	12.8	5	82	11	82	5	20	52	20	1.67
40379--40426	22	2.2	22	96	0	87	8	20	50	20	1.74
40386--40453	32	2.1	32	97	0	127	5	20	52	20	1.67
40452--40529	19	4.1	19	74	14	79	28	28	25	17	1.98
40450--40528	10	8.3	10	69	24	55	27	27	27	16	1.97
47701--47739	17	2.3	17	95	0	69	15	23	43	17	1.87
47736--47803	9	7.2	9	80	9	73	25	30	27	16	1.96
47737--47804	10	7.1	10	79	11	72	25	30	26	17	1.97
47737--47795	19	3.1	19	100	0	118	25	32	25	16	1.97
48587--49120	225	2.4	225	85	2	680	40	12	13	32	1.83
49185--49243	23	2.6	23	89	5	84	40	6	16	35	1.76
49231--49412	74	2.4	75	81	2	224	36	12	8	41	1.74
49878--49908	2	15.5	2	100	0	62	48	0	0	51	1.00
53910--53977	31	2.2	31	84	5	84	22	14	14	48	1.80
61617--61689	20	3.7	20	94	0	110	28	21	32	16	1.95
62291--62486	86	2.3	86	93	0	329	28	16	26	29	1.97
62302--62438	43	3.2	43	63	8	98	29	15	26	28	1.96
63625--63656	14	2.3	14	94	0	55	21	0	31	46	1.52
67625--67703	39	2.1	38	87	2	113	17	58	8	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67624--67730	45	2.6	40	79	11	119	19	53	8	18	1.70
67949--67988	21	1.9	21	84	0	53	30	52	2	15	1.55

Tables:   1

The End!