Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000885.1 Hibiscus syriacus cultivar Beakdansim tig00001728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1639497
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:742172 original size:24 final size:24
Alignment explanation
Indices: 742130--742184 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
742120 TATTGGGTTA
* *
742130 AACATAAATGAGCGCACATAAACG
1 AACATAAATGAACGAACATAAACG
* *
742154 AACATAATTGAACGAACATAAATG
1 AACATAAATGAACGAACATAAACG
742178 AACATAA
1 AACATAA
742185 CCGAACGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (24 bp):
AACATAAATGAACGAACATAAACG
Found at i:742190 original size:24 final size:24
Alignment explanation
Indices: 742145--742191 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
742135 AAATGAGCGC
**
742145 ACATAAACGAACATAATTGAACGA
1 ACATAAACGAACATAACCGAACGA
*
742169 ACATAAATGAACATAACCGAACG
1 ACATAAACGAACATAACCGAACG
742192 TTCACGAACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.53, C:0.19, G:0.13, T:0.15
Consensus pattern (24 bp):
ACATAAACGAACATAACCGAACGA
Found at i:744416 original size:23 final size:23
Alignment explanation
Indices: 744386--744432 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
744376 AAGACTTGCG
744386 ATAAGTCGACCTTGTTTATATCA
1 ATAAGTCGACCTTGTTTATATCA
744409 ATAAGTCGACCTTGTTTATATCA
1 ATAAGTCGACCTTGTTTATATCA
744432 A
1 A
744433 CATGATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (23 bp):
ATAAGTCGACCTTGTTTATATCA
Found at i:745010 original size:44 final size:44
Alignment explanation
Indices: 744959--745113 Score: 190
Period size: 44 Copynumber: 3.5 Consensus size: 44
744949 TACGAGCTTA
* *
744959 AGCTTATGGAATAATGGCAAGTATATTGGTAAAATAAGCTTATG
1 AGCTTATGGAATAATGGTAAGTATATTGGTAAAATAAGCTTACG
* *
745003 AACTTATGGACA-AATGGTAAGTATGA-TGGTAAGATAAGCTTACG
1 AGCTTATGGA-ATAATGGTAAGTAT-ATTGGTAAAATAAGCTTACG
*
745047 AGCTTATGGGATAAATGGTAAGTAT-TTGGTAAAATAAGCTTACG
1 AGCTTATGGAAT-AATGGTAAGTATATTGGTAAAATAAGCTTACG
745091 AGCTTATGGTTAATAAATGGTAA
1 AGCTTATGG--AAT-AATGGTAA
745114 AATATTGAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
43 1 0.01
44 70 0.73
45 14 0.15
46 11 0.11
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (44 bp):
AGCTTATGGAATAATGGTAAGTATATTGGTAAAATAAGCTTACG
Found at i:748084 original size:21 final size:21
Alignment explanation
Indices: 748058--748097 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
748048 ATGTGAGATC
748058 TATTCCAG-TTAAGAAATTGGA
1 TATTCC-GCTTAAGAAATTGGA
*
748079 TATTCCGCTTAAGAGATTG
1 TATTCCGCTTAAGAAATTG
748098 TGTTGCCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (21 bp):
TATTCCGCTTAAGAAATTGGA
Found at i:750938 original size:15 final size:16
Alignment explanation
Indices: 750914--750948 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
750904 TGTGGTGGTT
750914 GTTTTAAAGTTTAA-G
1 GTTTTAAAGTTTAATG
*
750929 GTTTTTAAGTTTAATG
1 GTTTTAAAGTTTAATG
750945 GTTT
1 GTTT
750949 AAGTCATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (16 bp):
GTTTTAAAGTTTAATG
Found at i:752558 original size:30 final size:29
Alignment explanation
Indices: 752468--752578 Score: 179
Period size: 29 Copynumber: 3.8 Consensus size: 29
752458 ACCGTTGACC
752468 GGTGCTATTCTGGTAAATAATTCTGTTTT
1 GGTGCTATTCTGGTAAATAATTCTGTTTT
752497 GGTGCTATTCTGGTAAATAATT-TGGTTTT
1 GGTGCTATTCTGGTAAATAATTCT-GTTTT
752526 GGTGCTATTCTGGTAAATAATTCTGTTTTT
1 GGTGCTATTCTGGTAAATAATTCTG-TTTT
* *
752556 GGTGCTATTCTTGTAATTAATTC
1 GGTGCTATTCTGGTAAATAATTC
752579 GAAATGTGTA
Statistics
Matches: 77, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
28 1 0.01
29 50 0.65
30 26 0.34
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCTGTTTT
Found at i:752593 original size:59 final size:58
Alignment explanation
Indices: 752472--752600 Score: 161
Period size: 59 Copynumber: 2.2 Consensus size: 58
752462 TTGACCGGTG
* ** * *
752472 CTATTCTGGTAAATAATTCTGTTTTGGTGCTATTCTGGTAAATAATTTGGTTTTGGTG
1 CTATTCTGGTAAATAATTCTGTTTTGGTGCTATTCTGGTAAATAATTCGAATGTGGTA
* *
752530 CTATTCTGGTAAATAATTCTGTTTTTGGTGCTATTCTTGTAATTAATTCGAAATGT-GTA
1 CTATTCTGGTAAATAATTCTG-TTTTGGTGCTATTCTGGTAAATAATTCG-AATGTGGTA
*
752589 CTATTTTGGTAA
1 CTATTCTGGTAA
752601 TTATTTTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
58 21 0.34
59 38 0.62
60 2 0.03
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.48
Consensus pattern (58 bp):
CTATTCTGGTAAATAATTCTGTTTTGGTGCTATTCTGGTAAATAATTCGAATGTGGTA
Found at i:753459 original size:13 final size:13
Alignment explanation
Indices: 753441--753465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
753431 GTCACGGTGC
753441 AATTGAATTTTGG
1 AATTGAATTTTGG
753454 AATTGAATTTTG
1 AATTGAATTTTG
753466 ATGGAATAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
AATTGAATTTTGG
Found at i:755072 original size:19 final size:19
Alignment explanation
Indices: 755048--755098 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
755038 GAAAATATTC
755048 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
755067 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
755086 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
755099 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:755074 original size:65 final size:65
Alignment explanation
Indices: 754942--755100 Score: 205
Period size: 65 Copynumber: 2.5 Consensus size: 65
754932 GCACTAAGGA
* ***
754942 TGCATCGATGCATAAAATGCATTCGATG-TTTGAAAAATAGCCTGGTGCATCGATGCATGGCTTG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGAG
* **
755006 TGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATGGAGA
1 TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAATAGCCAG-GTGCATCGATGCATGGAGA
755070 G
65 G
* **
755071 TGCATCGGTGCATGGAATGCATTCGATGTT
1 TGCATCGATGCATAAAATGCATTCGATGTT
755101 CAATTAATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
64 35 0.42
65 48 0.58
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (65 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGAG
Found at i:755516 original size:31 final size:31
Alignment explanation
Indices: 755478--755557 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
755468 ATTGATTTTG
755478 AAAAACTTACTCCCCCTTACTATAGCACATC
1 AAAAACTTACTCCCCCTTACTATAGCACATC
755509 AAAAACTTACTCCCCCTTACTATAGCACATC
1 AAAAACTTACTCCCCCTTACTATAGCACATC
** * *
755540 TTAAATTTTCTCCCCCTT
1 AAAAACTTACTCCCCCTT
755558 TTTATTAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.31, C:0.35, G:0.03, T:0.31
Consensus pattern (31 bp):
AAAAACTTACTCCCCCTTACTATAGCACATC
Found at i:763674 original size:19 final size:19
Alignment explanation
Indices: 763650--763700 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
763640 GAAAATATTC
763650 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
763669 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
763688 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
763701 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:763685 original size:65 final size:64
Alignment explanation
Indices: 763545--763702 Score: 210
Period size: 65 Copynumber: 2.5 Consensus size: 64
763535 GCACTAAGGA
* ***
763545 TGCATCGATGCATAAAATGCATTCGATG-TTTGAAAATAGCCTGGTGCATCGATGCATGGCTTG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAATAGCCAGGTGCATCGATGCATGGAGAG
* **
763608 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGAGAG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAATAGCCAG-GTGCATCGATGCATGGAGAG
* **
763673 TGCATCGGTGCATGGAATGCATTCGATGTT
1 TGCATCGATGCATAAAATGCATTCGATGTT
763703 CAATTAATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
63 27 0.33
64 12 0.14
65 44 0.53
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (64 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTTGAAAATAGCCAGGTGCATCGATGCATGGAGAG
Found at i:769638 original size:13 final size:13
Alignment explanation
Indices: 769620--769649 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
769610 GACCGGTCAC
769620 GACCCGACCCGTT
1 GACCCGACCCGTT
769633 GACCCGACCCGTT
1 GACCCGACCCGTT
769646 GACC
1 GACC
769650 GTTTACCGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.47, G:0.23, T:0.13
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:769776 original size:30 final size:29
Alignment explanation
Indices: 769657--769797 Score: 201
Period size: 29 Copynumber: 4.8 Consensus size: 29
769647 ACCGTTTACC
* * *
769657 GGTGTTATTCTGATAAATAATTCAGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
769686 GGTGCCATTCTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
* *
769715 GGTGATATTGTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTT
*
769744 GGTGCTATTCTGGTAAATAATTCTGTTTTT
1 GGTGCTATTCTGGTAAATAATTC-GGTTTT
*
769774 GGTGCTATTCTGGTAATTAATTCG
1 GGTGCTATTCTGGTAAATAATTCG
769798 AAATGGGTGT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 73 0.73
30 27 0.27
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (29 bp):
GGTGCTATTCTGGTAAATAATTCGGTTTT
Found at i:769817 original size:59 final size:58
Alignment explanation
Indices: 769686--769818 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
769676 ATTCAGTTTT
* * *** *
769686 GGTGCCATTCTGGTAAATAATTCGGTTTTGGTGATATTGTGGTAAATAATTCGGTTTT
1 GGTGCTATTCTGGTAAATAATTCGGTTTTGGTGATATTCTGGTAAATAATTCGAAATG
* * *
769744 GGTGCTATTCTGGTAAATAATTCTGTTTTTGGTGCTATTCTGGTAATTAATTCGAAATG
1 GGTGCTATTCTGGTAAATAATTC-GGTTTTGGTGATATTCTGGTAAATAATTCGAAATG
* *
769803 GGTGTTATTTTGGTAA
1 GGTGCTATTCTGGTAA
769819 TTTTTTTAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
58 22 0.35
59 41 0.65
ACGTcount: A:0.23, C:0.08, G:0.25, T:0.44
Consensus pattern (58 bp):
GGTGCTATTCTGGTAAATAATTCGGTTTTGGTGATATTCTGGTAAATAATTCGAAATG
Found at i:769817 original size:88 final size:87
Alignment explanation
Indices: 769657--769818 Score: 216
Period size: 88 Copynumber: 1.9 Consensus size: 87
769647 ACCGTTTACC
* *** *
769657 GGTGTTATTCTGATAAATAATTCAGTTTTGGTGCCATTCTGGTAAATAATTCGGTTTTGGTGATA
1 GGTGCTATTCTGATAAATAATTCAGTTTTGGTGCCATTCTGGTAAATAATTCGAAATGGGTGATA
769722 TTGTGGTAAATAATTCGGTTTT
66 TTGTGGTAAATAATTCGGTTTT
* * * * *
769744 GGTGCTATTCTGGTAAATAATTCTGTTTTTGGTGCTATTCTGGTAATTAATTCGAAATGGGTGTT
1 GGTGCTATTCTGATAAATAATTCAG-TTTTGGTGCCATTCTGGTAAATAATTCGAAATGGGTGAT
*
769809 ATTTTGGTAA
65 ATTGTGGTAA
769819 TTTTTTTAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 22 0.35
88 41 0.65
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.45
Consensus pattern (87 bp):
GGTGCTATTCTGATAAATAATTCAGTTTTGGTGCCATTCTGGTAAATAATTCGAAATGGGTGATA
TTGTGGTAAATAATTCGGTTTT
Found at i:772169 original size:23 final size:23
Alignment explanation
Indices: 772134--772181 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
772124 ATCAAGTACA
* *
772134 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCACTTAT
*
772157 ATAATGTAATAGGTAGCACTTAT
1 ATAATATAATAGGTAGCACTTAT
772180 AT
1 AT
772182 TGACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATAATATAATAGGTAGCACTTAT
Found at i:773005 original size:112 final size:112
Alignment explanation
Indices: 772729--773078 Score: 510
Period size: 112 Copynumber: 3.1 Consensus size: 112
772719 TATACTTATA
* * * ** **
772729 ATAAAGTATCGACACTATCAACATATCCGGTAGCT-ATTTACAGGTTTTGTCATTTCGAGACCGG
1 ATAAAGTATCGACACTTTCAATATATCCGGTAG-TGCTTTACCTGTTTTGTCATTTATAGACCGG
* * * * *
772793 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATGTA-TTAT
65 TTTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATATATTTTT
*
772840 A-AAATGTATCGACACTTTCAATATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAGACCGA
1 ATAAA-GTATCGACACTTTCAATATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAGACCGG
*
772904 TTTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATACATTTTT
65 TTTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATATATTTTT
772952 ATAAAGTATCGACACTTTCAATATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
773017 TTTGTCATTTTTTTACTTGTTATATTGTTATGGATCA-ATATATTTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGAT-AGATATATTTTT
773064 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
773079 AAACCGACAA
Statistics
Matches: 217, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
110 4 0.02
111 88 0.41
112 121 0.56
113 4 0.02
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.44
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACATGTTATATTGTTATGGATAGATATATTTTT
Found at i:773916 original size:209 final size:208
Alignment explanation
Indices: 773465--774226 Score: 1123
Period size: 209 Copynumber: 3.6 Consensus size: 208
773455 CCTCAATAAA
* * *
773465 AAAAAATCTTCCTACAACTAAATTAAAGAAAAGAGTGCACACATCCAAGAGAAAACAAAATATAG
1 AAAAAATCTTCCTACACCTAAA-TAAAGAAAAGAGTGCACACATCCGAGAGAAAACAAAATACAG
* *
773530 ATTTCGTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCATAGCACACTAAACTAA
65 ATCTCGTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCACAGCACACTAAACT-A
*
773595 AAAAATAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACAACACTCAA
129 AAAAATAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACAACACTCGA
773660 AATGTATGTCTCATT
194 AATGTATGTCTCATT
* * * *
773675 -AAAAGTTTTCCTACACCTAAATGAAAGAAAAGAGTGCACACATTCGAGAGAAAATAAAATACAG
1 AAAAAATCTTCCTACACCTAAAT-AAAGAAAAGAGTGCACACATCCGAGAGAAAACAAAATACAG
* * *
773739 ATCTCGTACAACGTACAACAAGACACTTCTTAGAAACTCTTTCATACCATAGCACACTAAACTAA
65 ATCTCGTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCACAGCACACTAAACTAA
* *
773804 AAAATAATACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACTACACTCGAA
130 AAAATAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACAACACTCGAA
* *
773869 ATGTACGTCTTATT
195 ATGTATGTCTCATT
* **
773883 AAAAAATCTTCCAACACCTGGATAAAGGAAAAGAGTGCACACATCCGAGAGAAAACAAAATACAG
1 AAAAAATCTTCCTACACCTAAATAAA-GAAAAGAGTGCACACATCCGAGAGAAAACAAAATACAG
*
773948 ATCTCTTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCACAGCACACTAAACTAA
65 ATCTCGTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCACAGCACACTAAACTAA
* * *
774013 AAAAGAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTTTTTCAAACCACAACACTTGAA
130 AAAATAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACAACACTCGAA
*
774078 ATGTATGCCTCATT
195 ATGTATGTCTCATT
* *
774092 AAAATAACTCTTCCTACACCTAAATAAAAGAAAAGACTCCACACATCCGAGAGAAAACAAAATAC
1 AAAA-AA-TCTTCCTACACCTAAAT-AAAGAAAAGAGTGCACACATCCGAGAGAAAACAAAATAC
* * * * * *
774157 AGATCTCTTACAACAAACAACAAAACACACTTCTTAAAAA-TAATTTCAAACCACAACACACTAA
63 AGATCTCGTACAACGAACAAC--AAGACACTTCTTAAAAACT-CTTTCATACCACAGCACACTAA
774221 ACTAAA
125 ACTAAA
774227 TGAAGCATAG
Statistics
Matches: 499, Mismatches: 44, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
208 80 0.16
209 304 0.61
210 2 0.00
211 68 0.14
212 4 0.01
213 41 0.08
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.21
Consensus pattern (208 bp):
AAAAAATCTTCCTACACCTAAATAAAGAAAAGAGTGCACACATCCGAGAGAAAACAAAATACAGA
TCTCGTACAACGAACAACAAGACACTTCTTAAAAACTCTTTCATACCACAGCACACTAAACTAAA
AAATAAAACATTTTAAGCGACTCCAAAAACATGACCACAACTCTTTCAAACCACAACACTCGAAA
TGTATGTCTCATT
Found at i:775095 original size:15 final size:15
Alignment explanation
Indices: 775064--775109 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
775054 TTTTTTCATT
*
775064 TTATTTTTA-AAATTA
1 TTATTATTATAAA-TA
775079 TTATTATTATAAATA
1 TTATTATTATAAATA
775094 TTATTATTATTAAATA
1 TTATTATTA-TAAATA
775110 AAAAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 19 0.68
16 9 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTATTATAAATA
Found at i:775096 original size:18 final size:17
Alignment explanation
Indices: 775071--775105 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
775061 ATTTTATTTT
775071 TAAAATTATTATTATTA
1 TAAAATTATTATTATTA
775088 TAAATATTATTATTATTA
1 TAAA-ATTATTATTATTA
775106 AATAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAAATTATTATTATTA
Found at i:785141 original size:21 final size:21
Alignment explanation
Indices: 785116--785165 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
785106 TGGAGCGTGG
* *
785116 GGGGAATCAGTACCCCCTCAT
1 GGGGAATCAATAACCCCTCAT
*
785137 GGGGAGTCAATAACCCCTCAT
1 GGGGAATCAATAACCCCTCAT
785158 GGGGAATC
1 GGGGAATC
785166 GGTTCCCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (21 bp):
GGGGAATCAATAACCCCTCAT
Found at i:794438 original size:54 final size:53
Alignment explanation
Indices: 794370--794588 Score: 294
Period size: 54 Copynumber: 4.1 Consensus size: 53
794360 CTCACTAACA
* * *
794370 AACATCGGTGCAGAAGCCATAGGAAAGGATGAATGTGTTGTCAAATGTTTTACG
1 AACATCTG-GCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATG
* * *
794424 AACATCTGGCCAGAAGCCATAGGAAAGAATGAATGTGTTGTCAAATGTTTTTTG
1 AACATCTGG-CAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATG
* * * * *
794478 AACATCTGAGCAGAAACCACATGAAATGATGAATGTATTGTTAAATGTTTTATG
1 AACATCTG-GCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATG
*
794532 AACATCTGGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTCATG
1 AACATCT-GGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATG
794586 AAC
1 AAC
794589 CACTGATTAT
Statistics
Matches: 144, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 141 0.98
55 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (53 bp):
AACATCTGGCAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATG
Found at i:794985 original size:22 final size:22
Alignment explanation
Indices: 794952--795011 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
794942 ATATCTACAT
794952 ATTAT-TCTTCAAAGATGATAG
1 ATTATCTCTTCAAAGATGATAG
*
794973 ATTCTCTCTTCAAAGATGATAG
1 ATTATCTCTTCAAAGATGATAG
* *
794995 ATTATGTTTTCAAAGAT
1 ATTATCTCTTCAAAGAT
795012 TAAAGCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 4 0.12
22 30 0.88
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (22 bp):
ATTATCTCTTCAAAGATGATAG
Found at i:795741 original size:45 final size:44
Alignment explanation
Indices: 795677--795854 Score: 212
Period size: 44 Copynumber: 4.0 Consensus size: 44
795667 CTATTTCCCA
*
795677 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTC-GGT
* * * * *
795722 CATCTGTAAGACCTACAGTGCTTGATGTTTACAAAGCATTCAGT
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTCGGT
* * **
795766 CATCTGTAAGACCTTCAGTGCATGATGTTTTCTAAACCTTCGAC
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTCGGT
** *
795810 CATCCATAAGACCTACAGTGCAAGATGTTTTCAAAAAGCCTTCGG
1 CATCTGTAAGACCTACAGTGCATGATGTTTTC-AAAA-CCTTCGG
795855 GAGCTTTTTG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
44 65 0.59
45 39 0.35
46 6 0.05
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTCGGT
Found at i:795975 original size:116 final size:115
Alignment explanation
Indices: 795809--796424 Score: 932
Period size: 116 Copynumber: 5.3 Consensus size: 115
795799 AAACCTTCGA
* *
795809 CCATCCATAAGACCTACAGTGCAAGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAA
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTAAA
*
795874 GCCTCTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCGCAGGG
66 GCCT-TGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
*
795925 CCATCCATAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTAAA
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTAAA
* *
795990 GCCTTTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACTTCAGGA
66 GCC-TTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
* *
796041 CCATCCATAAGACATACAGTGCAGGATGTTTTCAAAAAGCCTTC-AGGAGCATTTTGATATTTAA
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGA-GAGCTTTTTGATATTTAA
*
796105 AACCTTCGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
65 AGCCTT-GGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
* * * * * *
796157 CCATTCATAAGACCTACATTACAGGATGTTTTCGAAAAGCCTTC-AGGAGATTTTTGATAATTAA
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGA-GAGCTTTTTGATATTTAA
* *
796221 AGCCTTCGGGTCATCTTTAAGACCTACAGTGCAAGAAGATAAGACCTCAGGG
65 AGCCTT-GGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
* * *
796273 CCATCCATAAGACCTAAAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAT
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTAAA
* * *
796338 GCCTCCGGGTCATTTGTAAGACCTAAAGTGCAAGATGATAAGACCAT-AGGG
66 GCCT-TGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACC-TCAGGG
796389 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAA
1 CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAA
796425 TGAGATTTTA
Statistics
Matches: 457, Mismatches: 37, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
115 3 0.01
116 452 0.99
117 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (115 bp):
CCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTAAA
GCCTTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
Found at i:796695 original size:3 final size:3
Alignment explanation
Indices: 796687--796722 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
796677 ATTTTTAAAT
* *
796687 TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
796723 AATAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:796700 original size:21 final size:24
Alignment explanation
Indices: 796675--796722 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
796665 TTTTTTCATT
796675 TTATT-TT-TAAAT-TTATTATTA
1 TTATTATTATAAATATTATTATTA
796696 TTATTATTATAAATATTATTATTA
1 TTATTATTATAAATATTATTATTA
796720 TTA
1 TTA
796723 AATAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 5 0.21
22 2 0.08
23 5 0.21
24 12 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATTATTATAAATATTATTATTA
Found at i:796734 original size:21 final size:21
Alignment explanation
Indices: 796689--796739 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
796679 TTTTAAATTT
* *
796689 ATTATTATTATTATTATAAAT
1 ATTATTATTATTAATATAAAA
796710 ATTATTATTATTAA-ATAAAAA
1 ATTATTATTATTAATAT-AAAA
796731 ATTA-TATTA
1 ATTATTATTA
796740 CAAGCCCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTATTATTATTAATATAAAA
Found at i:805911 original size:31 final size:32
Alignment explanation
Indices: 805876--805938 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
805866 CAAGTTTACA
805876 AGATTTAGAACCAG-AACAAAAACTCTCTCTC
1 AGATTTAGAACCAGAAACAAAAACTCTCTCTC
805907 AGATTTAGAACCAGAAACAAAAACTCTCTCTC
1 AGATTTAGAACCAGAAACAAAAACTCTCTCTC
805939 TAAACCTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 14 0.45
32 17 0.55
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (32 bp):
AGATTTAGAACCAGAAACAAAAACTCTCTCTC
Found at i:810581 original size:55 final size:54
Alignment explanation
Indices: 810491--810635 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
810481 TACAAAAATG
*
810491 TAAGAAATTCATACT-AAGGTATGAATTTCTGTATGGGCACTTTGTGTGCAAAAC
1 TAAGAAATTCATACTAAATGTATGAATTTCTGTATGGGCACTTTGTGTGC-AAAC
* *
810545 TAAGAAATTCATACTAAATGTATGAATTTCCGTATGGGCACTTTGTGTGCGAAC
1 TAAGAAATTCATACTAAATGTATGAATTTCTGTATGGGCACTTTGTGTGCAAAC
* *
810599 TAAGAAATTCATACTAAGTGTATTAATTTCTGTATGG
1 TAAGAAATTCATACTAAATGTATGAATTTCTGTATGG
810636 AAATATATGT
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 52 0.62
55 32 0.38
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (54 bp):
TAAGAAATTCATACTAAATGTATGAATTTCTGTATGGGCACTTTGTGTGCAAAC
Found at i:811088 original size:135 final size:136
Alignment explanation
Indices: 810845--811167 Score: 540
Period size: 135 Copynumber: 2.4 Consensus size: 136
810835 AAAGATTAAT
**
810845 AGGCCTAACTGTGCATTTGATAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
*
810910 TTGAGGCCTAACTGTGCATTTGACAAAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTA
66 TTGAGGCCTAACTGTGCATTTGACAAAAAGCTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTA
*
810975 CCTTTG
131 CATTTG
*
810981 AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATG-TAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
* *
811045 TTGAGGCCTAACTGTGCATTTGACAGAAAGCTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTG
66 TTGAGGCCTAACTGTGCATTTGACAAAAAGCTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTA
811110 CATTTG
131 CATTTG
* * * *
811116 AGGCCTAATTGTGCATTTGGCAAAAAGGTGTCAATTATGCCAGTTAGATGAA
1 AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATGCCAGTTAGATGAA
811168 CGGTTAAATA
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
135 126 0.72
136 48 0.28
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (136 bp):
AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTGAGGCCTAACTGTGCATTTGACAAAAAGCTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTA
CATTTG
Found at i:811185 original size:68 final size:68
Alignment explanation
Indices: 810845--811167 Score: 522
Period size: 68 Copynumber: 4.8 Consensus size: 68
810835 AAAGATTAAT
* *
810845 AGGCCTAACTGTGCATTTGATAGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
810910 TTG
66 TTG
* *
810913 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTACCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
810978 TTG
66 TTG
* * *
810981 AGGCCTAACTGTGCATTTGGCAGAAATGTGTCATTTATG-TAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
811045 TTG
66 TTG
* *
811048 AGGCCTAACTGTGCATTTGACAGAAAGCTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCAT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
811113 TTG
66 TTG
* * * *
811116 AGGCCTAATTGTGCATTTGGCAAAAAGGTGTCAATTATGCCAGTTAGATGAA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
811168 CGGTTAAATA
Statistics
Matches: 235, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
67 62 0.26
68 173 0.74
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:811252 original size:81 final size:81
Alignment explanation
Indices: 811117--811439 Score: 454
Period size: 81 Copynumber: 4.0 Consensus size: 81
811107 GTGCATTTGA
* *
811117 GGCCTAATTGTGCATTTGGCAA-AAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCG
1 GGCCTAACTGTGCAATTGG-AAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCG
811181 TTGAGTAAAAGAATAAT
65 TTGAGTAAAAGAATAAT
811198 GGCCTAACTGTGCAATTGGAAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
1 GGCCTAACTGTGCAATTGGAAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
811263 TAAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* *
811279 GGCCTAACTGTGCAATTGGAAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGT
1 GGCCTAACTGTGCAATTGGAAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
811344 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * * * * * ** *
811360 GGTCTAGCTGTGCACTT-GACAGAAAAGTGTCAAATATGCAAGTTA-AGTGAAAAGCTAAATACC
1 GGCCTAACTGTGCAATTGGA-AGAAAGGTGTCAATTATGCCAGTTAGA-TGAACGGTTAAATACC
* *
811423 TTTGGGTAAAAGAATAA
64 GTTGAGTAAAAGAATAA
811440 AGGAATTATA
Statistics
Matches: 220, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
80 5 0.02
81 215 0.98
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (81 bp):
GGCCTAACTGTGCAATTGGAAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
TGAGTAAAAGAATAAT
Found at i:815637 original size:45 final size:46
Alignment explanation
Indices: 815588--815681 Score: 181
Period size: 45 Copynumber: 2.1 Consensus size: 46
815578 TAAAAAAAGT
815588 AAACAAGAAAGCCTCACAAAGGTAGGTGTTTACAAGAA-GGATGCA
1 AAACAAGAAAGCCTCACAAAGGTAGGTGTTTACAAGAATGGATGCA
815633 AAACAAGAAAGCCTCACAAAGGTAGGTGTTTACAAGAATGGATGCA
1 AAACAAGAAAGCCTCACAAAGGTAGGTGTTTACAAGAATGGATGCA
815679 AAA
1 AAA
815682 GATAGGCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 38 0.79
46 10 0.21
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.16
Consensus pattern (46 bp):
AAACAAGAAAGCCTCACAAAGGTAGGTGTTTACAAGAATGGATGCA
Found at i:815896 original size:19 final size:18
Alignment explanation
Indices: 815842--815898 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
815832 GTTTCAAAAT
815842 CATTGTGAATGTTTCGAAA
1 CATTGTGAATGTTTCG-AA
*
815861 CATTGGGGCAA-GTTTCGAA
1 CATT-GTG-AATGTTTCGAA
815880 CTATTGTGAATGTTTCGAA
1 C-ATTGTGAATGTTTCGAA
815899 ACTTCTAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 2 0.06
19 17 0.53
20 11 0.34
21 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (18 bp):
CATTGTGAATGTTTCGAA
Found at i:815901 original size:20 final size:20
Alignment explanation
Indices: 815843--815901 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
815833 TTTCAAAATC
815843 ATTGTGAATGTTTCGAAAC-
1 ATTGTGAATGTTTCGAAACT
*
815862 ATTGGGGCAA-GTTTCG-AACT
1 ATT-GTG-AATGTTTCGAAACT
815882 ATTGTGAATGTTTCGAAACT
1 ATTGTGAATGTTTCGAAACT
815902 TCTAAACACT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
18 2 0.06
19 14 0.42
20 15 0.45
21 2 0.06
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (20 bp):
ATTGTGAATGTTTCGAAACT
Found at i:816127 original size:20 final size:20
Alignment explanation
Indices: 816102--816151 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
816092 TAGTGTTTTT
816102 CATATTTTAAA-AGC-TTGAAA
1 CATATTTTAAACA-CATT-AAA
816122 CATATTTTAAACACATTAAA
1 CATATTTTAAACACATTAAA
816142 CATATTTTAA
1 CATATTTTAA
816152 TTAACTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (20 bp):
CATATTTTAAACACATTAAA
Found at i:816581 original size:20 final size:19
Alignment explanation
Indices: 816518--816585 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 19
816508 AATTCAATAA
*
816518 GTTTCAAAAGCATTGTGAAT
1 GTTTCGAAA-CATTGTGAAT
*
816538 GTTTCGAAACATTGGGGCAA-
1 GTTTCGAAACATT-GTG-AAT
816558 GTTTCGAAACTATTGTGAAT
1 GTTTCGAAAC-ATTGTGAAT
816578 GTTTCGAA
1 GTTTCGAA
816586 GCTTCTAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.15
20 30 0.73
21 5 0.12
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (19 bp):
GTTTCGAAACATTGTGAAT
Found at i:816783 original size:92 final size:97
Alignment explanation
Indices: 816681--816871 Score: 338
Period size: 92 Copynumber: 2.0 Consensus size: 97
816671 TCGACCCATT
816681 AAAACAGTTTCAGGGTGCAAAGTTTCGAAACTTACAAAAGTTTCCAAACTATGAATAGTACTCAT
1 AAAACAGTTTCAGGGTGCAAAGTTTCGAAACTTACAAAAGTTTCCAAACTATGAATAGTACTCAT
816746 -TAT-A-A-TGTCATGAACAATGC-AATAGTG
66 GTATAATAGTGTCATGAACAATGCAAATAGTG
816773 AAAACAGTTTCAGGGTGCAAAGTTTCGAAACTTACAAAAGTTTCCAAACTATGAATAGTACTCAT
1 AAAACAGTTTCAGGGTGCAAAGTTTCGAAACTTACAAAAGTTTCCAAACTATGAATAGTACTCAT
816838 GTATGAATAGTGTCATGAACAATGCAAATAGTG
66 GTAT-AATAGTGTCATGAACAATGCAAATAGTG
816871 A
1 A
816872 CTGAATAGTA
Statistics
Matches: 93, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
92 65 0.70
93 3 0.03
95 1 0.01
96 1 0.01
97 15 0.16
98 8 0.09
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (97 bp):
AAAACAGTTTCAGGGTGCAAAGTTTCGAAACTTACAAAAGTTTCCAAACTATGAATAGTACTCAT
GTATAATAGTGTCATGAACAATGCAAATAGTG
Found at i:816927 original size:20 final size:20
Alignment explanation
Indices: 816890--816928 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
816880 TATTTTTCAT
*
816890 ATTTTAAAAGCTTGAAACAC
1 ATTTTAAAAGCTTCAAACAC
816910 ATTTTAAACA-CTTCAAACA
1 ATTTTAAA-AGCTTCAAACA
816929 TGTTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTTTAAAAGCTTCAAACAC
Found at i:817553 original size:20 final size:20
Alignment explanation
Indices: 817500--817559 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
817490 TTCCGAAAGC
*
817500 ATTGTGAATGTTTCAAAAC-
1 ATTGTGAATATTTCAAAACT
* *
817519 ATTGAGGAA-AGTTTCGAAACT
1 ATTG-TGAATA-TTTCAAAACT
817540 ATTGTGAATATTTCAAAACT
1 ATTGTGAATATTTCAAAACT
817560 TCTAAACACA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 4 0.12
20 23 0.72
21 5 0.16
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (20 bp):
ATTGTGAATATTTCAAAACT
Found at i:817723 original size:17 final size:16
Alignment explanation
Indices: 817701--817733 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
817691 TTTTCCAAAC
817701 TATGAATAGTACTCATG
1 TATGAATAGTA-TCATG
817718 TATGAATAGTATCATG
1 TATGAATAGTATCATG
817734 AACAGTGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (16 bp):
TATGAATAGTATCATG
Found at i:833071 original size:2 final size:2
Alignment explanation
Indices: 833064--833089 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
833054 AATTATACAT
833064 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
833090 ATACTCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:841642 original size:13 final size:13
Alignment explanation
Indices: 841624--841671 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
841614 TGCGTCATAA
841624 ATTTATGACGCGC
1 ATTTATGACGCGC
*
841637 ATTTATGACGCAC
1 ATTTATGACGCGC
841650 ATTTATGACGCGC
1 ATTTATGACGCGC
841663 ATTTATGAC
1 ATTTATGAC
841672 TTACATTGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:841755 original size:85 final size:85
Alignment explanation
Indices: 841650--841815 Score: 296
Period size: 85 Copynumber: 2.0 Consensus size: 85
841640 TATGACGCAC
* *
841650 ATTTATGACGCGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
1 ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
*
841715 CACACATTTGTGTGTCATAA
66 CACACATTCGTGTGTCATAA
*
841735 ATTTATGACACGCATTTATGACTTACATTGCGTGTCATTGAAGCCCCCGTCATAAATGAAAATGA
1 ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
841800 CACACATTCGTGTGTC
66 CACACATTCGTGTGTC
841816 GTGATTGTAT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 77 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (85 bp):
ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
CACACATTCGTGTGTCATAA
Found at i:843959 original size:20 final size:20
Alignment explanation
Indices: 843919--843959 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
843909 ATCCAAATTG
* * *
843919 ATCAAATTTCACATTCTAAC
1 ATCAAATTTAACACTCAAAC
843939 ATCAAATTTAACACTCAAAC
1 ATCAAATTTAACACTCAAAC
843959 A
1 A
843960 ATGATTTCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.29
Consensus pattern (20 bp):
ATCAAATTTAACACTCAAAC
Found at i:846074 original size:49 final size:49
Alignment explanation
Indices: 846017--846269 Score: 272
Period size: 49 Copynumber: 5.2 Consensus size: 49
846007 AAAATGAAAA
* * *
846017 TTAAATGCCAAACGGTGTATTTTTTGTAAAAAGGTGCCACTAATGCAAG
1 TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
* * * * * *
846066 TTAAATGCCTATCAGTGCATTTTTGGAAGAAATGTGCAACTAATGCAAG
1 TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
* * * * * *
846115 TTAGATGACAAACGGTGCATTTTCGGTAGAAAGGTGCCGCAAATGAAAG
1 TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
* * * *
846164 TTAAATGCCTAACGGTGCATTTTTGGTAGAAAGGTGTCATTAATGTAAG
1 TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
* ** ** * *
846213 TTAGATGAAAAATTGAGCATTTTTAGTAGAAAGGTGCCACTAATGCAAG
1 TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
846262 TTAAATGC
1 TTAAATGC
846270 AAAAAAATGC
Statistics
Matches: 161, Mismatches: 43, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 161 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (49 bp):
TTAAATGCCAAACGGTGCATTTTTGGTAGAAAGGTGCCACTAATGCAAG
Found at i:846195 original size:98 final size:98
Alignment explanation
Indices: 846025--846269 Score: 312
Period size: 98 Copynumber: 2.5 Consensus size: 98
846015 AATTAAATGC
* * * *
846025 CAAACGGTGTATTTTTTGTAAAAAGGTGCCACTAATGCAAGTTAAATGCCTATCAGTGCATTTTT
1 CAAACGGTGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGCCTAACAGTGCATTTTT
*
846090 GGAAGAAATGTG-CAACTAATGCAAGTTAGATGA
66 GGAAGAAAGGTGTC-ACTAATGCAAGTTAGATGA
** * * * *
846123 CAAACGGTGCATTTTCGGTAGAAAGGTGCCGCAAATGAAAGTTAAATGCCTAACGGTGCATTTTT
1 CAAACGGTGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGCCTAACAGTGCATTTTT
* * *
846188 GGTAGAAAGGTGTCATTAATGTAAGTTAGATGA
66 GGAAGAAAGGTGTCACTAATGCAAGTTAGATGA
* ** *
846221 AAAATTGAGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGC
1 CAAACGGTGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGC
846270 AAAAAAATGC
Statistics
Matches: 124, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
98 123 0.99
99 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (98 bp):
CAAACGGTGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGCCTAACAGTGCATTTTT
GGAAGAAAGGTGTCACTAATGCAAGTTAGATGA
Found at i:846233 original size:147 final size:146
Alignment explanation
Indices: 846008--846272 Score: 334
Period size: 147 Copynumber: 1.8 Consensus size: 146
845998 AATTGCTCTA
* *
846008 AAATGAAAATTAAATGCCAAACGGTGTATTTTTTGTAAAAAGGTGCCACTAATGCAAGTTAAATG
1 AAATGAAAATTAAATGCCAAACGGTGCATTTTTGGTAAAAAGGTGCCACTAATGCAAGTTAAATG
*** * * * *
846073 CCTATCAGTGCATTTTTGGAAGAAATGTGCAACTAATGCAAGTTAGATGACAAACGGTGCATTTT
66 AAAATCAGAGCATTTTTAGAAGAAAGGTGCAACTAATGCAAGTTAAATG-CAAACGGTGCATTTT
846138 CGGTAGAAAGGTGCCGC
130 CGGTAGAAAGGTGCCGC
* * * * * * *
846155 AAATGAAAGTTAAATGCCTAACGGTGCATTTTTGGTAGAAAGGTGTCATTAATGTAAGTTAGATG
1 AAATGAAAATTAAATGCCAAACGGTGCATTTTTGGTAAAAAGGTGCCACTAATGCAAGTTAAATG
* * *
846220 AAAAAT-TGAGCATTTTTAGTAGAAAGGTGCCACTAATGCAAGTTAAATGCAAA
66 -AAAATCAGAGCATTTTTAGAAGAAAGGTGCAACTAATGCAAGTTAAATGCAAA
846273 AAAATGCATT
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
146 4 0.04
147 92 0.94
148 2 0.02
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (146 bp):
AAATGAAAATTAAATGCCAAACGGTGCATTTTTGGTAAAAAGGTGCCACTAATGCAAGTTAAATG
AAAATCAGAGCATTTTTAGAAGAAAGGTGCAACTAATGCAAGTTAAATGCAAACGGTGCATTTTC
GGTAGAAAGGTGCCGC
Found at i:847170 original size:17 final size:20
Alignment explanation
Indices: 847134--847171 Score: 55
Period size: 17 Copynumber: 2.0 Consensus size: 20
847124 CATAAGTTAT
847134 TATTATATCTATAGTACACA
1 TATTATATCTATAGTACACA
847154 TATT-TATCT-TA-TACACA
1 TATTATATCTATAGTACACA
847171 T
1 T
847172 TATATAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 2 0.11
19 5 0.28
20 4 0.22
ACGTcount: A:0.37, C:0.16, G:0.03, T:0.45
Consensus pattern (20 bp):
TATTATATCTATAGTACACA
Found at i:848604 original size:24 final size:23
Alignment explanation
Indices: 848563--848608 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
848553 AAGGCTATCT
*
848563 ATTCACTTCCATCAAAGCGTGTAG
1 ATTCACTTACATCAAAGC-TGTAG
848587 ATTCACCTTACATC-AAGCTGTA
1 ATTCA-CTTACATCAAAGCTGTA
848609 ATCAGAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
24 9 0.45
25 7 0.35
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (23 bp):
ATTCACTTACATCAAAGCTGTAG
Found at i:851667 original size:2 final size:2
Alignment explanation
Indices: 851662--851711 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
851652 ATTTATTTTC
851662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
851704 AT AT AT AT
1 AT AT AT AT
851712 TACATCTATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:852212 original size:11 final size:11
Alignment explanation
Indices: 852196--852225 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
852186 TCACCTATGG
852196 CCAGCTCACCT
1 CCAGCTCACCT
852207 CCAGCTCACCT
1 CCAGCTCACCT
852218 CCAGCTCA
1 CCAGCTCA
852226 TTCACCTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.53, G:0.10, T:0.17
Consensus pattern (11 bp):
CCAGCTCACCT
Found at i:853014 original size:22 final size:21
Alignment explanation
Indices: 852983--853027 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
852973 CATCTTCGTT
*
852983 TCATCATCAACACCAACAACA
1 TCATCATCAACACCAAAAACA
*
853004 TCATCCATCAAGACCAAAAACA
1 TCAT-CATCAACACCAAAAACA
853026 TC
1 TC
853028 TTCTTAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.47, C:0.36, G:0.02, T:0.16
Consensus pattern (21 bp):
TCATCATCAACACCAAAAACA
Found at i:853350 original size:13 final size:13
Alignment explanation
Indices: 853332--853359 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
853322 AATATCAATC
853332 TTAAAGAAAATTG
1 TTAAAGAAAATTG
853345 TTAAAGAAAATTG
1 TTAAAGAAAATTG
853358 TT
1 TT
853360 GCTCTCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (13 bp):
TTAAAGAAAATTG
Found at i:855419 original size:90 final size:89
Alignment explanation
Indices: 855267--855443 Score: 273
Period size: 90 Copynumber: 2.0 Consensus size: 89
855257 CCTAACACAC
* * *
855267 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGTTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCAAATCATAGTAGGATTTTATTATTTCAAATTAATTAAATCTATA
* * *
855332 TTTAATTGATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTAAATAAT
* *
855356 CCTTTTATATCCAAGTTATCCAAATCATAGTAGAGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCAAATCATAGTAG-GATTTTATTATTTCAAATTAATTAAATCTAT
855421 ATTTAATTAATTGAAATTAAATA
65 ATTTAATTAATTGAAATTAAATA
855444 TTCGGGATTA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 29 0.37
90 50 0.63
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCCAAATCATAGTAGGATTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAAATAAT
Found at i:855749 original size:18 final size:18
Alignment explanation
Indices: 855728--855766 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
855718 TAGAATAGGA
*
855728 ACAAGCCTTGGAATATTC
1 ACAAGCCTTGGAATAGTC
*
855746 ACAAGTCTTGGAATAGTC
1 ACAAGCCTTGGAATAGTC
855764 ACA
1 ACA
855767 CTTGTATAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (18 bp):
ACAAGCCTTGGAATAGTC
Found at i:857653 original size:13 final size:13
Alignment explanation
Indices: 857635--857661 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
857625 GTAGACATGT
857635 TATAATTAACACA
1 TATAATTAACACA
857648 TATAATTAACACA
1 TATAATTAACACA
857661 T
1 T
857662 GGATCAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TATAATTAACACA
Found at i:858115 original size:18 final size:18
Alignment explanation
Indices: 858092--858129 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
858082 GATAAATAGT
*
858092 ACATTCCCTTTAAGAATG
1 ACATTCCCTGTAAGAATG
858110 ACATTCCCTGTAAGAATG
1 ACATTCCCTGTAAGAATG
858128 AC
1 AC
858130 TCATGACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (18 bp):
ACATTCCCTGTAAGAATG
Found at i:860856 original size:25 final size:25
Alignment explanation
Indices: 860790--860841 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
860780 GAACCTTTCA
860790 ATAATAATCATATTATTATATGGAC
1 ATAATAATCATATTATTATATGGAC
860815 ATAATAATCATATTATTATATGGAC
1 ATAATAATCATATTATTATATGGAC
860840 AT
1 AT
860842 TATTATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (25 bp):
ATAATAATCATATTATTATATGGAC
Found at i:861893 original size:23 final size:23
Alignment explanation
Indices: 861845--861893 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
861835 TTCTTGCATT
* * *
861845 ATTTATTTATTTATTTATTTTCA
1 ATTTATTTATTTACTTATGTTAA
861868 ATTTATTTAATTTACTT-TGTTAA
1 ATTTATTT-ATTTACTTATGTTAA
861891 ATT
1 ATT
861894 CCCTTCTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
ATTTATTTATTTACTTATGTTAA
Found at i:868846 original size:21 final size:22
Alignment explanation
Indices: 868822--868865 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
868812 ATTAAAATAA
*
868822 TTTGTAAA-TTAATTTAATAGT
1 TTTGGAAAGTTAATTTAATAGT
* *
868843 TTTGGAAAGTTATTTTAGTAGT
1 TTTGGAAAGTTAATTTAATAGT
868865 T
1 T
868866 CAAAGTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (22 bp):
TTTGGAAAGTTAATTTAATAGT
Found at i:869024 original size:60 final size:60
Alignment explanation
Indices: 868910--869047 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
868900 CATATGTCCC
* * *
868910 TAAACTATGACTCTCATTTTAAATTAGTCCTTAAACTTTTAAATGTTTCGATTTCATCCT
1 TAAACTATAACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTTCGATTTCATCCT
* * * *
868970 TAAACTCTAACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTT-GAATTTCTTCCC
1 TAAACTATAACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTTCG-ATTTCATCCT
*
869030 CAAACTATGAA-TCTCATT
1 TAAACTAT-AACTCTCATT
869048 ATACTGGACC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
59 1 0.01
60 64 0.96
61 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (60 bp):
TAAACTATAACTCTCATTCTAAATTAGTCCTTAAACTTTTAAATATTTCGATTTCATCCT
Found at i:875027 original size:4 final size:4
Alignment explanation
Indices: 875018--887252 Score: 10920
Period size: 4 Copynumber: 3084.8 Consensus size: 4
875008 GGCTAACCAA
* * * * * *
875018 AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAA AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
875066 ATAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
875114 AGAC AGAC AGAA AGAT AGAA AGAC AGAT AGAC AGAT AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * * * *
875162 AAAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC ACAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
875210 AGAC AGAC AGAGT CTGAC AGAC ATACT -GAC AGAC AGAT AGAT AGAC AAAT
1 AGAT AGAT AGA-T -AGAT AGAT AGA-T AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875260 AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAG AGAT GGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875308 AGAT AGAT AGAC AAAT AGAT AGAT AGAC AGAT AGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875356 AGAT AGAT ATAC AGAT AGAT AGAT AGAC ATAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875404 AGAC AGAT AGAT AGAT AGAT AGAC AGAT AGAT AGAT AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
875452 AGAT AGAC AGAC AGAT AGAT AGAC AGAC AGAT AGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
875500 AGAT AGAT AGAC AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
875548 AGAC AGAT AGAT AGAT AGAC AGAT AGAT AGAT AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875596 AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875644 AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875692 AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
875740 AGAC AGAT AGAT AGAC AGAT AGAT AGAG AGAT AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
875788 AGAC AGAT AGAT AGAT AGAT AGAT AGAT --AT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
875834 AGAT AGAT AGAT AGAT --AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
875880 AG-- AGAT AGAG AGAT AGAT AGAT AGAT AGAT AGAT -GAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
875925 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-T AGAT AGAT AGAT AG--
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
875970 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT -TAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
876017 AGAT AGAT AGAC AGAC AGAC AGAT AGAC AGAC AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876065 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876113 AGGAT AGAT AGA- AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 A-GAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876161 AGAT AGAT AGAT -GAT AGAT AGAT AGAT -GAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
876207 --AT AGCT AGAT AGAT -GAT AGAT AG-- AGAT AGAT AGAT AGAT AG-T
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876249 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876297 AGAT AGAT AGAT AGAT AG-T -GAT AGAT AGATT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT AGAT AGAT AGAT
* * *
876344 AGAT AGAT AGAT AGAT AGAT AGAT AGAG ATAG AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876392 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
876440 AGCT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-AT AG--
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876485 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876533 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-T
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
876580 AGAT AGA- AGAT AGAT AGAT AGAG AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876627 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
876675 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
876723 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAC AGAC AGAC AGACAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG--AT
* * * * * * * * * * * *
876773 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
876821 AGA- CGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
876868 AGA- CGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
876915 AGAC AGAC A-AC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
876962 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877010 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGA- CGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877057 AGAC AGAC AGAC AGACAC AGAC AGAC AGAC AGA- CGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877106 AG-C AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC A-AC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * *
877152 AGA- AGAC AGAC A-AC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877198 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877246 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877294 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
877342 AGAC AGAC AGAAC AGA- AGAT AGAT AGAT --AT AGAT AGAT AGAT AG--
1 AGAT AGAT AG-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
877386 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
877434 AGAT AGAT AGAT AGAC AGAT AGAT AGAT AGAT AGAC AGAT AGAG AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
877482 AGAC AGAC AGAT AGAC AGAC AGAC AGAT AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877530 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
877578 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
877626 AGAT AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
877674 AGAC AGAC AGAC AGAT AGAC AAAC AGAC AGAT AGAC AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
877722 AGAC AGAC AGAC AGAT AGAC AGAC AGAC AGAT AGAT AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
877770 AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAG AGAT AGAC AAAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
877818 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGGT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
877866 AGAC AGGT AGAC ATG-T AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGAT
1 AGAT AGAT AGAT A-GAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
877914 AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * ** ** * * *
877962 AGAC AGAT AGAC AGAT AGGC AGAT AGGC AGAC AGAC AGAC AGACAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG--AT AGAT
878012 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
878060 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
878108 AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
878156 AG-- AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
878202 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAG AGAC ATAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
878250 AGAA AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
878298 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
878346 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
878394 AGAC AGAT AGAC AAAT AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
878442 AGAC AGAT AGAT AGAT ACAT AGAT AGAT AGAG AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
878490 AGAT AGAC AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC AGAG AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
878538 AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-- AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
878584 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAG AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
878632 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
878680 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
878728 AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
878776 AGAC AAAC AGAT AGAC AGAC AGAT AGAC AGAT AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
878824 AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAT AGAC ATAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
878872 AGAT AGAC AG-- AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
878918 AGAT AGAT AGAC AGAT TGAT AGAT AGAC AGAT TGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
878966 AGAC AGAC AGAT AGAC AGAC AGAT AGAC AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
879014 AGAC AGAT AGAC AGAC AGAT AGAC AGAC AGAT AGAC AGAC AGAT GGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
879062 AGAG AGAT AGAC AGAT AGAT AGAC AGAT AGAT GGAT AGAT AGAT GGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
879110 AGAT AGAT GGAT ATAT AGAT GGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879158 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879206 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879254 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT --AT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879300 AGAT --AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879346 AGAT AGAT -GAT AGAT AGAT AGAT AGAT AG-T AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
879392 AGAT AG-- AGAT AGAT AGAG AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
879438 AGAT AGAT AGCT AGAT AGAT AGAT AGAT AGAT A-AT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879485 AGAT AGAT AGAT AGAT AGAT AGAT AGAT -GAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879532 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT --AT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
879578 AGAT AGAT AGAT AGAT AGAAT AGATCT AGAT AGAT AG-- AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AG-AT AGA--T AGAT AGAT AGAT AGAT AGAT AGAT
* * * **
879627 AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGCC AGAAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-AT
* * * * *
879676 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAT AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
879724 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAT AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
879772 AGAC AGAC AGAC AGAC AGAC AGA- AGAC AGAT AGAC AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
879819 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGACAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG--AT AGAT AGAT AGAT
* * * * * *
879869 AGAT AGAG AGAC AGAT ACAGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT --AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
879919 AGAT AGACAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT CGAC AGAT
1 AGAT AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
879969 AGAC AGAT AGAC AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
880017 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
880065 AGAT AGAC AGAG AGAC AGAC AGAC AGAC AGAT AGAC AGAT AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
880113 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
880161 AGAT AGAC AGAT AGAT AG-- AGAT AGAC AGAT AGAC AGAT AGAT AGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
880207 AGAT AGAC AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
880255 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880303 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880351 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880399 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880447 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
880495 AGAT AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
880543 ATAT ATAC AGAT AGAC AGAC AGAT TGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
880591 AGAT AGAT AGAC AGACT -GAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGA-T AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
880639 AGAT AGAC AGAT AGAC AGGT AGAC AGGT AGAC AGGT AGAT AGGT ATACT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T
* * * * * * * * * *
880688 -GGT AGAC AGGT AGAC AGGT AGAC AGGT AGAT AGAT AGAC AGGT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* ** * ** * * * * **
880735 AGGT AGCC AGGT AGCC AGGT AGAC AGAT AGAC AGAT AGAC AGAT AGGC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** * *
880783 AGAT AGGC AGAT AGGC AGAC AGAC AGACAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AG--AT AGAT AGAT AGAT AGAT AGAT
880833 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880881 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880929 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
880977 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
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881025 AGAT AGAT AGAT AGAT AGAT AGAT ACAT AGAT AGAT AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
881073 AGAC AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
881121 AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
881169 AGAC AGAT AGAT GGAC AGAT AGAT GGACT -GAT AGAT AGAC AGAT TGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT AGAT AGAT AGAT AGAT
* * * * *
881217 AGAC AGAT AGAT AGA- CGAT AGAT AGAC AGAT AGAT AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
881264 AGAC AGAC AGAT AGAT ATAT AGAT AGAT ATAG AGAT AG-T CAGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT -AGAT AGAT
* * *
881312 AGAT ATAT AGAT AGAT AGAT AGAT GGAT AGAT AGAT GGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
881360 GGAT AGAT AGAT AGAT AGAT AGAT ACAT AGAT TGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881408 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881456 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881504 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881552 AGAT AGAAT AGAT AGAT AG-- AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AG-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
881599 AGAT AGAT AGAG AGAG AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
881647 CGAT AGAT AG-T AGAT AGAT AGAT --AT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881692 AGAT --AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
881738 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
881786 AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
881834 AGAG AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
881882 AGAC AGAC AGAC AGAC AGAT AGAC AGAT -GAC AGAT AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
881929 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAC AGA- AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
881976 A-AC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
882023 AGAC AG-T AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
882070 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGACG AGAT AGACAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT AG--AT AGAT
* * * * * *
882121 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
882169 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
882217 AGAT AGAC AGGT AGAC AGGT AGAC AGAT AGAC AGGT AGAC AGGT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
882265 AGGT AGACT -GGT AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGAT AGAC
1 AGAT AGA-T AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
882313 AGGT AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * ** * ** * *
882361 AGAT AGAC AGAT AGAC AGAT AGGC AGTT AGGA- AGAT AGGC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-GAT AGAT AGAT AGAT AGAT
* * *
882409 AGACAT ACAA ACAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
882459 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
882507 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
882555 AGAT AGAC AGAC AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
882603 AGAC AGAT AGAG AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
882651 AGA- AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
882698 AGAC AGAT AGAC AGAT AGAC AG-- AGAC AGAT AGA- CGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * ** *
882743 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGGC AGAT AGAT AG-C
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** ** ** ** **
882790 AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** ** ** ** **
882838 AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** * * * * *
882886 AGAT AGGC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
882934 AGAT AGAC AGAT AGAT AGAT AGAT ATAT AGAT AGAT AGAG AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
882982 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AAAC AGAC AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
883030 AGAT AGAT AGAT AGAT --AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
883076 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
883124 AGAT AGAC AGAC AGAT TGAT AGAT AGAC CGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
883172 AGAT AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
883220 AGAC ATAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGGT AGAC AGGT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
883268 AGGT AGAT AGGT ACTGGT AGAC AG-T AGA- AGGT AGA- AGGT AGAC AGAT
1 AGAT AGAT AGAT A--GAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
883315 AGAC AGGT AGAC AGGT AGA- CGGT AGAC AGGT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * ** ** * * * * *
883362 AGA- CGAT AGAC AGAT AGGC AGAT AGGC AGAC AGAG ACAT ACAT ACAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
883409 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
883457 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT ATGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-GAT
883506 AGAT AGAT AG-T AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
883553 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT ATAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
883601 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT TGAT TGAT AGACT -GAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT
* * * *
883649 AGAC AGAT AGAT AGAT AGAC AGAT AGAT AGAC AGAT AGAT AGAT AGCT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
883697 AGAT AGAG AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
883745 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
883793 AGAT AGA- AGAT AGAC AGAT AGAC AGAT -GAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
883839 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
883887 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
883935 AGTT AGAC AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
883983 AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAT AGAT ATAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
884031 AGAT AGAG AGAT AGAG AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
884079 AGAT AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
884127 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
884175 AGAC AGACAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
1 AGAT AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
884225 AGAC AGAC AGAC AGAC AGAC AGAT AGAC AGAT AGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
884273 AGAC AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
884321 AGAT AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
884369 ATAT AGAT AGAT AGAC AGAT AGA- AGAT AGAT AGAC AGAC AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
884416 AGAT AGAT AGAT AGAT AGAT --AT AGAT AGATT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT AGAT AGAT AGAT
*
884463 AGAT AGAT AGAT AGAT AGAT AG-- AGAT AGAT AGAT AGAT --AT AGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
884507 AGAT AGAT AG-T -GAT AGAT AGAT AGAT CGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
884553 AGAT GAGAT AGAT AGAT AGAT AGAT AG-T AGAT AGAT AGAT AGAT AGA-
1 AGAT -AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
884600 AGAT AG-- AGAT AGAT AGAT AGAT AGAT ATAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
884646 AGAT --AT AGAT AG-- AGAT AGAT AGAT GATAT AGAT AGAT AGAT AGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT -AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
884691 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAG AGAGC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT AGAT
* * * * * * * * *
884740 AG-- AGAC AGA- AGAC AGAC AGA- CGAC AGAC AGAC AG-- AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
884782 AGAA AGAC AGAC AGAC AGACAC AGAC AGAC AGAT AGAT AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
884832 AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
884880 AGAC AGAT AGAC AGAT AGAC AGGT AGAC AGGT AGAC AGGT AGAC AGGT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
884928 AGAC AGGT AGACT -GGT AGAC AG-T AGAC AGGT AGAC AGAT AGAC AG-T
1 AGAT AGAT AGA-T AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
884974 AGAC AG-T AGAC AGGT AGAC AGGT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * ** ** * * * *
885021 AGAC AGAT AG-C AGAT AGGC AGAT AGGC AGAC AGAC AGAC AGAC AGACAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG--AT
* *
885070 AGAC AGAC AGACAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AG--AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
885120 AGAT AGAT AGAT AGAG AGAT AGAT AGAT AGAT AGAT AGAA AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885168 AGAT AGAT AG-- AGAT AGAT AGAT -GAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885213 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885261 AGAT AGAAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGGAT
1 AGAT AG-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-GAT
885311 AGAT AGAT AGAT AGAT AGAT -GAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885358 AGAT AGAT AGAT AGAT AGAT AGAT AGAT --AT AGA- AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885403 AG-T AGAT AGAT AGAT AGAT -GAT AGAT AGAT AGAT A-AT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
885448 AGAT AGAT AGAT AGAT AGAG ATAT AGAT AGAT AGAT AGAT AGAT AGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* *
885496 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA- AGAT AAAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
885543 AGAT AGAT AGAT AGAT ATAC AGAT AGAC AGAC AGAT -GAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * *
885590 AGAT AGAT AGAT AGAT AGAT AGAC AGAT AGAC AG-- AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
885636 AGAT AG-- AGAT ACAC AGGT AGAC AGGT AGAT AGAC AGGT AGAC AGGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-GAT
* * * * * * *
885683 AGGT AGAAT AGA- AGGT AGAC AGGT AGAC AGAT AGAC AGGT AGAGT AGAT
1 AGAT AG-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGA-T AGAT
* * * * * **
885732 AGAC AGGT AGAC AGAT AGAC AGAT AGAC AGAT AGA- AGAT AGGC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** * * * * *
885779 AGGC AGAT AGGC AGAC AGAC AGAT ACAG ACAT AGAT AGAT --AT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885825 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-T AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
885872 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGCT AGA- AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
885919 AGAT AGAT AGAT AGAT AGAT AG-- AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
*
885965 AGAT AGAT --AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT ATAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
886011 AGAT AGAT AGAT AGAT AGAG AGAT AGAT AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * ** **
886059 AGAC AGAT AGAT AGAT AGAC AGAT AGAC AGAT AGGC AGAT AGGC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** ** ** **
886107 AGGC AGAT AG-- AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
** ** * * *
886153 AGGC AGAT AGCAT AGGC AGAT AG-- AGAT AGAC AGAT AGAC AGAT AGAC
1 AGAT AGAT AG-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
886200 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AG-- AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
886246 AGA- AGAC AGAT AGAC ATAT AGAC AGAT AGA- CGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* ** * ** **
886292 AGAT ACGAT AG-C AGAT AGGC AGAT ATG-C AGAT AGGC AGAT AGGC AG-T
1 AGAT A-GAT AGAT AGAT AGAT AGAT A-GAT AGAT AGAT AGAT AGAT AGAT
** ** ** ** **
886339 AGGCAT AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT AGGC AGAT
1 A-G-AT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* ** * ** * * *
886389 AG-C AGAT AGGC AGAT AGCAG AGAT AGGC AGAT AGCGAT AGAC ATAT AGAC
1 AGAT AGAT AGAT AGAT AG-AT AGAT AGAT AGAT A--GAT AGAT AGAT AGAT
* * * * * * * *
886439 ATAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AAAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
886487 AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAT AGAT AGAC AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * *
886535 AGAT AGAG AGAT AGAC ATAT AGAT AGAT AGAC ATAT AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
886583 AGAT AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * *
886631 AGAC AAAT AGAC AGAT AGAC AGAT AGAC ATAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* ** * * * * * * *
886679 AGAT AGAC AG-T AGCC AGGT AGAC AG-T AGAC AGGT AGAC AGGT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * *
886725 AGAT AGAC AG-T AGAC AGGT AGAC AGAT AGAC AGAT AGAG ATAA AGGAG
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT A-GAT
* ** ** * * *
886773 AGAC AGAT AGGC AGAT AGGC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * *
886821 AGAC AGAT AGAC AGAA AGAC AGAT AGAC AGAT AGAC AGAT AGAC AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
886869 AGAC AGAC AGAC AGAC AGAT AGAC AGAT AGAC AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * *
886917 AGAC AGAC AGAC ATAA AGAC AGAA AGAC AGAT AGAC AGAT AGAA AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
886965 AGAC AGAC AGAC AGAC AGAC AAAC AGAC A-A- AGAG AGAT AGAT AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * * * *
887011 AGAC AGAC ATAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGCA- AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AG-AT AGAT
* * * * * * * * * *
887059 AG-T AGAT AGAC AGAC AGAC AGAC AGAC AGAG AGAC AGAC AGAC AGAC
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * * * * * * *
887106 AGAC AGAC AGAG AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
887154 AGAT AGAC AGAC AGAT GGAT AGAT GGAT AGAT AGAT AGAT GGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * * * *
887202 AGAC AAAC AGAC AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
887250 AGA
1 AGA
887253 CAGACAGACA
Statistics
Matches: 10310, Mismatches: 1679, Indels: 484
0.83 0.13 0.04
Matches are distributed among these distances:
2 85 0.01
3 204 0.02
4 9874 0.96
5 85 0.01
6 62 0.01
ACGTcount: A:0.49, C:0.09, G:0.26, T:0.16
Consensus pattern (4 bp):
AGAT
Found at i:887257 original size:4 final size:4
Alignment explanation
Indices: 887202--887336 Score: 146
Period size: 4 Copynumber: 33.8 Consensus size: 4
887192 ATGGATAGAT
* * * * * * * * *
887202 AGAC AAAC AGAC AGAC AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
*
887250 AGAC AGAC AGAC AGAC AGAC AGAC AGAC ATAC AGAC AGAC AGAC AGAC
1 AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC
* *
887298 AGTA- AGAC GGAA AGAC AGAC AGAC AGAC AGAC AGAC AGA
1 AG-AC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGAC AGA
887337 TAGATAGATT
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
3 1 0.01
4 117 0.98
5 1 0.01
ACGTcount: A:0.51, C:0.17, G:0.24, T:0.07
Consensus pattern (4 bp):
AGAC
Found at i:894384 original size:23 final size:23
Alignment explanation
Indices: 894336--894384 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
894326 TTCTTGCATT
* * *
894336 ATTTATTTATTTATTTATTTTCA
1 ATTTATTTATTTACTTATGTTAA
894359 ATTTATTTAATTTACTT-TGTTAA
1 ATTTATTT-ATTTACTTATGTTAA
894382 ATT
1 ATT
894385 CCCTTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
ATTTATTTATTTACTTATGTTAA
Found at i:894966 original size:22 final size:22
Alignment explanation
Indices: 894935--894984 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
894925 GAACAAAAAC
*
894935 AAAAAA-AGCAGAA-AAAAGCAA
1 AAAAAATAGCA-AAGAAAAACAA
*
894956 AAAAAATAGCAAAGAAAAATAA
1 AAAAAATAGCAAAGAAAAACAA
894978 AAAAAAT
1 AAAAAAT
894985 GAATAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.78, C:0.06, G:0.10, T:0.06
Consensus pattern (22 bp):
AAAAAATAGCAAAGAAAAACAA
Found at i:908582 original size:49 final size:49
Alignment explanation
Indices: 908463--908760 Score: 276
Period size: 49 Copynumber: 6.1 Consensus size: 49
908453 AAAATGAAAA
* * * * *
908463 TTAAATGCCTAATGGTGCATTTTTAGAAGAAAGGTTCCATTAATGCAAG
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
* * * *
908512 TTAGATG-AAAATGGTGCATTTTTTGCAGAAATGTACCAATAATGCAAG
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
* ** ** *
908560 TTAAATGCCTAACAGTGCATTTTTTAAAGAAAGG-AGACACTAATGCAAG
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTA-CCACTAATGCAAG
* * * * *
908609 TTATATGACAAATGGTGTATTTTTTGCAAAAAGGTACCACTAATTCAAG
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
* * * * * * * *
908658 TTAAATGCCTAACGGTGCATTTTTGGTAGAAATGTGCCATTAATGCAAA
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
* * * * *
908707 TTAGATGACAAATGGTGTATTTTTGGCAGAAAGGTGCCACTAATGCAAG
1 TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
908756 TTAAA
1 TTAAA
908761 AGCAAAACAG
Statistics
Matches: 194, Mismatches: 52, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
48 41 0.21
49 152 0.78
50 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (49 bp):
TTAAATGCCAAATGGTGCATTTTTTGCAGAAAGGTACCACTAATGCAAG
Found at i:908661 original size:98 final size:98
Alignment explanation
Indices: 908463--908777 Score: 400
Period size: 98 Copynumber: 3.2 Consensus size: 98
908453 AAAATGAAAA
** *
908463 TTAAATGCCTAATGGTGCA-TTTTTAGAAGAAAGGTTCCATTAATGCAAGTTAGATGA-AAATGG
1 TTAAATGCCTAACAGTGCATTTTTTA-AAGAAAGGTGCCATTAATGCAAGTTAGATGACAAATGG
* * *
908526 TGCATTTTTTGCAGAAATGTACCAATAATGCAAG
65 TGTATTTTTTGCAGAAAGGTACCACTAATGCAAG
* * * *
908560 TTAAATGCCTAACAGTGCATTTTTTAAAGAAAGGAGACACTAATGCAAGTTATATGACAAATGGT
1 TTAAATGCCTAACAGTGCATTTTTTAAAGAAAGGTGCCATTAATGCAAGTTAGATGACAAATGGT
* *
908625 GTATTTTTTGCAAAAAGGTACCACTAATTCAAG
66 GTATTTTTTGCAGAAAGGTACCACTAATGCAAG
* *** * *
908658 TTAAATGCCTAACGGTGCATTTTTGGTAGAAATGTGCCATTAATGCAAATTAGATGACAAATGGT
1 TTAAATGCCTAACAGTGCATTTTTTAAAGAAAGGTGCCATTAATGCAAGTTAGATGACAAATGGT
* *
908723 GTATTTTTGGCAGAAAGGTGCCACTAATGCAAG
66 GTATTTTTTGCAGAAAGGTACCACTAATGCAAG
* **
908756 TTAAAAGCAAAACAGTGCATTT
1 TTAAATGCCTAACAGTGCATTT
908778 AGGTATAAAA
Statistics
Matches: 186, Mismatches: 30, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
97 43 0.23
98 143 0.77
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (98 bp):
TTAAATGCCTAACAGTGCATTTTTTAAAGAAAGGTGCCATTAATGCAAGTTAGATGACAAATGGT
GTATTTTTTGCAGAAAGGTACCACTAATGCAAG
Found at i:912397 original size:13 final size:13
Alignment explanation
Indices: 912379--912405 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
912369 GTAGACATGT
912379 TATAATTAACACA
1 TATAATTAACACA
912392 TATAATTAACACA
1 TATAATTAACACA
912405 T
1 T
912406 GGATCAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (13 bp):
TATAATTAACACA
Found at i:914668 original size:24 final size:24
Alignment explanation
Indices: 914619--914668 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
914609 TATATTTTTT
* * *
914619 TAATTAAATTTGACAATCCATGTA
1 TAATTAAAATTGACAACCCATATA
914643 TAATTAAAATT-ACAACCGCATATA
1 TAATTAAAATTGACAACC-CATATA
914667 TA
1 TA
914669 TATATATCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (24 bp):
TAATTAAAATTGACAACCCATATA
Found at i:916498 original size:23 final size:23
Alignment explanation
Indices: 916450--916498 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
916440 TTTTTGCATT
* * *
916450 ATTTATTTATTTATTTATTTTCA
1 ATTTATTTATTTACTTATGTTAA
916473 ATTTATTTAATTTACTT-TGTTAA
1 ATTTATTT-ATTTACTTATGTTAA
916496 ATT
1 ATT
916499 CCGTTCTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
ATTTATTTATTTACTTATGTTAA
Found at i:918170 original size:18 final size:18
Alignment explanation
Indices: 918125--918171 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
918115 TGCTTTTAAA
*
918125 ATTATCTTTAAAAATTTT
1 ATTATCTTTAGAAATTTT
* *
918143 AGT-TCTTTTAGATATTTT
1 ATTATC-TTTAGAAATTTT
918161 ATTATCTTTAG
1 ATTATCTTTAG
918172 GTTATCTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.57
Consensus pattern (18 bp):
ATTATCTTTAGAAATTTT
Found at i:923725 original size:8 final size:8
Alignment explanation
Indices: 923714--923745 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
923704 AGCCGACAAG
923714 GCTAGAAA
1 GCTAGAAA
*
923722 GCTAGCAA
1 GCTAGAAA
923730 GCTAGAAA
1 GCTAGAAA
923738 GCTAGAAA
1 GCTAGAAA
923746 CACAAGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.16, G:0.25, T:0.12
Consensus pattern (8 bp):
GCTAGAAA
Found at i:927954 original size:8 final size:8
Alignment explanation
Indices: 927943--927974 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
927933 AGTCGACAAG
927943 GCTAGAAA
1 GCTAGAAA
*
927951 GCTAGCAA
1 GCTAGAAA
927959 GCTAGAAA
1 GCTAGAAA
927967 GCTAGAAA
1 GCTAGAAA
927975 CACAAGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.16, G:0.25, T:0.12
Consensus pattern (8 bp):
GCTAGAAA
Found at i:930067 original size:22 final size:22
Alignment explanation
Indices: 930025--930067 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
930015 AATATTGTTC
*
930025 TATATATATTTATAAATGATAT
1 TATATATATTTATAAACGATAT
*
930047 TATAT-TATTATATCAACGATA
1 TATATATATT-TATAAACGATA
930068 ATATTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.47
Consensus pattern (22 bp):
TATATATATTTATAAACGATAT
Found at i:930368 original size:49 final size:49
Alignment explanation
Indices: 930296--930391 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
930286 TCATATGTCT
* *
930296 CTAAACTACTACTCTCTTTTTAAATTAGTCCTTCAACTTTTAAATATCC
1 CTAAACTACTACTCTCATTTTAAATTAGTCCTTAAACTTTTAAATATCC
* *
930345 CTAAACTATTACTCTCATTTTAAATTTGTCCTTAAACTTTTAAATAT
1 CTAAACTACTACTCTCATTTTAAATTAGTCCTTAAACTTTTAAATAT
930392 TTTGATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (49 bp):
CTAAACTACTACTCTCATTTTAAATTAGTCCTTAAACTTTTAAATATCC
Found at i:930519 original size:60 final size:58
Alignment explanation
Indices: 930340--930525 Score: 176
Period size: 60 Copynumber: 3.1 Consensus size: 58
930330 AACTTTTAAA
* * * * **
930340 TATCCCTAAACTATTACTCTCATTTTAAATTTGTCCTTAAACTTTTAAATATTTTGATT
1 TATCCCTAAACTA-TAATCTCATTCTAAATTAGTCCTTAAACTTTTAGATATTTCAATT
* * * *
930399 TCATCCTTAAACTCTAATTCTCATTCTAAATTAGTCCTTAAACTTTT-GAACATTTGAATT
1 T-ATCCCTAAACTATAA-TCTCATTCTAAATTAGTCCTTAAACTTTTAG-ATATTTCAATT
* * * *
930459 TATTCCCCAAACTATGAATCTCATTCTAAATTGGACCCTAAACTTTTAGATATTTCAATT
1 TA-TCCCTAAACTAT-AATCTCATTCTAAATTAGTCCTTAAACTTTTAGATATTTCAATT
930519 TAATCCC
1 T-ATCCC
930526 AAATTCATCC
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
59 4 0.04
60 95 0.92
61 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (58 bp):
TATCCCTAAACTATAATCTCATTCTAAATTAGTCCTTAAACTTTTAGATATTTCAATT
Found at i:931040 original size:32 final size:33
Alignment explanation
Indices: 930998--931069 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 33
930988 ATAAATTGAA
*
930998 TTCGGGTTACTTTC-GATTC-AGGTTATTTT-GGG
1 TTCGGTTTACTTTCAG-TTCGA-GTTATTTTCGGG
931030 TTCGGTTTACTTTCAGTTCGAGTTATTTTCGGG
1 TTCGGTTTACTTTCAGTTCGAGTTATTTTCGGG
931063 -TCGGTTT
1 TTCGGTTT
931070 TGGTTCAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 31 0.86
33 5 0.14
ACGTcount: A:0.11, C:0.14, G:0.26, T:0.49
Consensus pattern (33 bp):
TTCGGTTTACTTTCAGTTCGAGTTATTTTCGGG
Found at i:934002 original size:56 final size:56
Alignment explanation
Indices: 933915--934030 Score: 164
Period size: 56 Copynumber: 2.1 Consensus size: 56
933905 AAGTCTGGTG
*
933915 GTCTTGGCAAGCTCGATACTCTCTCTCGAACCTCCCTGTTC-GACACTTCCACCAAT
1 GTCTTGGCAAGCTCGATACTCTATCTCGAACCTCCCTG-TCGGACACTTCCACCAAT
* * *
933971 GTCTTGGCAAGC-CTGATACTCTATCTTGAACCTCTCTGTCGGACACTTGCACCAAT
1 GTCTTGGCAAGCTC-GATACTCTATCTCGAACCTCCCTGTCGGACACTTCCACCAAT
934027 GTCT
1 GTCT
934031 CGAACCCAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
55 3 0.06
56 51 0.94
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (56 bp):
GTCTTGGCAAGCTCGATACTCTATCTCGAACCTCCCTGTCGGACACTTCCACCAAT
Found at i:945541 original size:73 final size:74
Alignment explanation
Indices: 945457--945675 Score: 268
Period size: 76 Copynumber: 2.9 Consensus size: 74
945447 CTAAAACATC
*
945457 TTAAATCCTAATTAAAATACTTCAAA-CTATTTAAACTAAAATACCTAAAA-AAAATATAATTTA
1 TTAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAACAAAATATAATTTA
945520 AAATAATAT-
65 AAATAATATA
*
945529 TCTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATAT
1 T-TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAA-ATATAAT-T
*
945594 AAAAATAATATA
63 TAAAATAATATA
* * * * *
945606 TGAAAACTTAATTAAAATACTAAAACCTACTTAAACTAAAATA-C-AAAGATAAAATATAATGTT
1 TTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAA-ACAAAATATAA--TT
945669 TAAAATA
63 TAAAATA
945676 TTATCCATAA
Statistics
Matches: 128, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
72 5 0.04
73 43 0.34
74 11 0.09
75 18 0.14
76 50 0.39
77 1 0.01
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (74 bp):
TTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAATATAATTTAA
AATAATATA
Found at i:947512 original size:15 final size:15
Alignment explanation
Indices: 947489--947529 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
947479 ATCTCATCCT
*
947489 ATTTCTCTTCTTTCC
1 ATTTATCTTCTTTCC
*
947504 ATTTTTCTTC-TTCC
1 ATTTATCTTCTTTCC
947518 -TTTATCTTCTTT
1 ATTTATCTTCTTT
947530 GAGTAGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTATCTTCTTTCC
Found at i:950507 original size:4 final size:4
Alignment explanation
Indices: 950498--950525 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
950488 TGTGATTACA
950498 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
950526 TGATCTAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:951296 original size:133 final size:134
Alignment explanation
Indices: 951039--951312 Score: 406
Period size: 133 Copynumber: 2.1 Consensus size: 134
951029 TGAATAGTCA
* *
951039 GTTTGAAAGTTTAATGTTTTATTTAAATTACATTTAATATTTTAATTTGTTTATGATATTTTATG
1 GTTTGAAAGTTTAATGTTTTATTTAAATTACATTTAATATTTTAATGTGTTTATGATATTCTATG
* * * * *
951104 TTTTATCTGACCATGCGTTATTACTGTCTAACTAAGTTGTACATAATGCGTTATTATTTTCATGC
66 TTTTATCTCACCATGCGATATTACTGTCTAACTAAGTTGTACATAACGCGTGATGATTTTCATGC
951169 GTAG
131 GTAG
* * *
951173 GTTTGACATTTTAATGTTTTATTTAAATTACGTTTAAT-TTTTAATGTGTTTATGATATTCTATG
1 GTTTGAAAGTTTAATGTTTTATTTAAATTACATTTAATATTTTAATGTGTTTATGATATTCTATG
* * * * *
951237 TTTTATCTCACCTTGTGATATTACTGTCTCACTAAGTTTTACTTAACGCGTGATGATTTTCATGC
66 TTTTATCTCACCATGCGATATTACTGTCTAACTAAGTTGTACATAACGCGTGATGATTTTCATGC
951302 GTAG
131 GTAG
951306 GTTTGAA
1 GTTTGAA
951313 TAAAAAATCG
Statistics
Matches: 124, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
133 89 0.72
134 35 0.28
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (134 bp):
GTTTGAAAGTTTAATGTTTTATTTAAATTACATTTAATATTTTAATGTGTTTATGATATTCTATG
TTTTATCTCACCATGCGATATTACTGTCTAACTAAGTTGTACATAACGCGTGATGATTTTCATGC
GTAG
Found at i:952411 original size:22 final size:22
Alignment explanation
Indices: 952383--952440 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
952373 TGTACAAGCT
952383 GTGCTAAGGCACTTTAGTATAA
1 GTGCTAAGGCACTTTAGTATAA
*
952405 GTGCTAAGGCACTTTAGTATCA
1 GTGCTAAGGCACTTTAGTATAA
*
952427 GTGCTAATGCACTT
1 GTGCTAAGGCACTT
952441 CCGTGAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (22 bp):
GTGCTAAGGCACTTTAGTATAA
Found at i:955362 original size:15 final size:15
Alignment explanation
Indices: 955342--955382 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
955332 ATATCTCATC
*
955342 CCATTTCTCTTCTTT
1 CCATTTATCTTCTTT
*
955357 CCATTTTTCTTC-TT
1 CCATTTATCTTCTTT
955371 CC-TTTATCTTCT
1 CCATTTATCTTCT
955383 CTGAGTAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61
Consensus pattern (15 bp):
CCATTTATCTTCTTT
Found at i:955869 original size:21 final size:20
Alignment explanation
Indices: 955843--955882 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
955833 TTCGAGTTCG
955843 AGTATCAATACTGGTATGAAA
1 AGTATCAATACTGGT-TGAAA
955864 AGTATCAATACTGGTTGAA
1 AGTATCAATACTGGTTGAA
955883 TTGGTGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (20 bp):
AGTATCAATACTGGTTGAAA
Found at i:958454 original size:133 final size:134
Alignment explanation
Indices: 958197--958470 Score: 379
Period size: 133 Copynumber: 2.1 Consensus size: 134
958187 TGAATAGTCA
* * *
958197 GTTTGAAAGTTTAATGTTTTATTTAAATTACGTTTAATATTTTAATTTGTTTGTGATATTTTATG
1 GTTTGAAAGTTTAATGTTTTATTTAAATTACGTTTAATATTTTAATGTGTTTATGATATTCTATG
* * * * * * *
958262 TTTTATTTGACCATGCGTTATTAATGTCTAACTAAGTTGTACATAATACGTTATTATTTTCTTGC
66 TTTTATCTCACCATGCGATATTAATGTCTAACTAAGTTGTACATAACACGTGATGATTTTCATGC
958327 GTAG
131 GTAG
*
958331 GTTTGAAATTTTAATGTTTTATTTAAATTACGTTTAAT-TTTTAATGTGTTTATGATATTCTATG
1 GTTTGAAAGTTTAATGTTTTATTTAAATTACGTTTAATATTTTAATGTGTTTATGATATTCTATG
* * * * * * *
958395 TTTTATCTCACCTTGTGATATTACTGTCTTACTAAGTTTTACTTAACGCGTGATGATTTTCATGC
66 TTTTATCTCACCATGCGATATTAATGTCTAACTAAGTTGTACATAACACGTGATGATTTTCATGC
958460 GTAG
131 GTAG
958464 GTTTGAA
1 GTTTGAA
958471 TAAAAAATCG
Statistics
Matches: 122, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
133 85 0.70
134 37 0.30
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.51
Consensus pattern (134 bp):
GTTTGAAAGTTTAATGTTTTATTTAAATTACGTTTAATATTTTAATGTGTTTATGATATTCTATG
TTTTATCTCACCATGCGATATTAATGTCTAACTAAGTTGTACATAACACGTGATGATTTTCATGC
GTAG
Found at i:959568 original size:22 final size:22
Alignment explanation
Indices: 959536--959593 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
959526 TGTACCAGCT
*
959536 GTGCTATGGCACTTTAGTATAA
1 GTGCTAAGGCACTTTAGTATAA
*
959558 GTGCTAAGGCACTTTAGTATCA
1 GTGCTAAGGCACTTTAGTATAA
* *
959580 TTGCTAATGCACTT
1 GTGCTAAGGCACTT
959594 CCGTGAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (22 bp):
GTGCTAAGGCACTTTAGTATAA
Found at i:962189 original size:19 final size:19
Alignment explanation
Indices: 962165--962207 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
962155 TACTTTTACA
*
962165 TTTCAGATTCATAACTCTT
1 TTTCAGATCCATAACTCTT
*
962184 TTTCAGATCCATAACTTTT
1 TTTCAGATCCATAACTCTT
962203 TTTCA
1 TTTCA
962208 TTGAAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTCAGATCCATAACTCTT
Found at i:966361 original size:13 final size:13
Alignment explanation
Indices: 966343--966372 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
966333 TATTTCTCTT
*
966343 TTCTTCATTTTTC
1 TTCTTCATTTATC
966356 TTCTTCATTTATC
1 TTCTTCATTTATC
966369 TTCT
1 TTCT
966373 CTTAGTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTTCATTTATC
Found at i:966930 original size:21 final size:21
Alignment explanation
Indices: 966904--966955 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
966894 GGCATAAAGC
966904 ATCGATACTGCCAGGGAGAGT
1 ATCGATACTGCCAGGGAGAGT
*
966925 ATCGATACTACCAGGGAGAGT
1 ATCGATACTGCCAGGGAGAGT
966946 ATCGATACTG
1 ATCGATACTG
966956 TGCGGTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (21 bp):
ATCGATACTGCCAGGGAGAGT
Found at i:970135 original size:38 final size:38
Alignment explanation
Indices: 970083--970181 Score: 137
Period size: 39 Copynumber: 2.6 Consensus size: 38
970073 AAATAAATTC
* *
970083 AATCAATGATTTATTTTATTTTTCAAAATA-GAAAATA
1 AATCAATGATTTATTTTCTTTTACAAAATAGGAAAATA
*
970120 AATCTAATGATTTATTTCCTTTTACAAAATAGGAAAATA
1 AATC-AATGATTTATTTTCTTTTACAAAATAGGAAAATA
*
970159 AATCCAACGATTTATTTTCTTTT
1 AAT-CAATGATTTATTTTCTTTT
970182 GCATATCAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
37 4 0.07
38 23 0.43
39 26 0.48
40 1 0.02
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.43
Consensus pattern (38 bp):
AATCAATGATTTATTTTCTTTTACAAAATAGGAAAATA
Found at i:970309 original size:92 final size:95
Alignment explanation
Indices: 970113--970369 Score: 274
Period size: 92 Copynumber: 2.7 Consensus size: 95
970103 TTTCAAAATA
* * * *
970113 GAAAATAAATCT-AATGATTTATTTCCTTTTACAAAATAGGAAAATAAA-TCCAACGATTTATTT
1 GAAAATAAAT-TGAATAATTTATTTTCTTTTACAAAACAGAAAAATAAACT-CAACGATTTATTT
* * ** **
970176 TCTTTTGCATATCAGAATCATATAAGATTCTTAG
64 TC-TTTACAAAAAAG-ATCATATAAGATTCAAAG
* * * * *
970210 GAAAATAAATT-TATCGATTTATTTTCTTTT-TAAAACAGAAAAAT-AATTCTAC-ATTTATTTT
1 GAAAATAAATTGAAT-AATTTATTTTCTTTTACAAAACAGAAAAATAAACTCAACGATTTATTTT
970271 CTTTACAAAAAAGATCATATAAGATTCAAAG
65 CTTTACAAAAAAGATCATATAAGATTCAAAG
* *
970302 GAAAATAAATTGAATAATTTATTTTCTTTTACAAAATAGGAAAATAAACTCAACGATTTATTTTC
1 GAAAATAAATTGAATAATTTATTTTCTTTTACAAAACAGAAAAATAAACTCAACGATTTATTTTC
970367 TTT
66 TTT
970370 CATAAATAGG
Statistics
Matches: 135, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
92 41 0.30
93 21 0.16
94 16 0.12
95 18 0.13
96 15 0.11
97 24 0.18
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (95 bp):
GAAAATAAATTGAATAATTTATTTTCTTTTACAAAACAGAAAAATAAACTCAACGATTTATTTTC
TTTACAAAAAAGATCATATAAGATTCAAAG
Found at i:970361 original size:39 final size:39
Alignment explanation
Indices: 970300--970447 Score: 127
Period size: 39 Copynumber: 3.9 Consensus size: 39
970290 TAAGATTCAA
* * **
970300 AGGAAAATAAATTGAATAATTTATTTTCTTTTACAAAAT
1 AGGAAAATAAACTCAACGATTTATTTTCTTTTACAAAAT
970339 AGGAAAATAAACTCAACGATTTATTTTC-TTT-CATAAAT
1 AGGAAAATAAACTCAACGATTTATTTTCTTTTACA-AAAT
* *
970377 AGG-AAACAAA-TCCAACGATTTA-TTGCATTTTACAAAA-
1 AGGAAAATAAACT-CAACGATTTATTTTC-TTTTACAAAAT
*
970414 A--AAAACAAAAC-C-ACGATTTATTTTCTTTTACAAA
1 AGGAAAA-TAAACTCAACGATTTATTTTCTTTTACAAA
970448 TCAGAATCAT
Statistics
Matches: 92, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
35 17 0.18
36 11 0.12
37 22 0.24
38 16 0.17
39 26 0.28
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.34
Consensus pattern (39 bp):
AGGAAAATAAACTCAACGATTTATTTTCTTTTACAAAAT
Found at i:970901 original size:37 final size:37
Alignment explanation
Indices: 970859--970948 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
970849 TTCAATCAAT
* * *
970859 TGATTTATTTTATTTTTCAAAATA-GAAATAAATCTAA
1 TGATTTATTTTCTTTTACAAAATAGGAAA-AAATCCAA
*
970896 TGATTTATTTCCTTTTACAAAATAGGAAAAAATCCAA
1 TGATTTATTTTCTTTTACAAAATAGGAAAAAATCCAA
*
970933 CGATTTATTTTCTTTT
1 TGATTTATTTTCTTTT
970949 GCATATCAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 42 0.91
38 4 0.09
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (37 bp):
TGATTTATTTTCTTTTACAAAATAGGAAAAAATCCAA
Found at i:971055 original size:39 final size:39
Alignment explanation
Indices: 970977--971055 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 39
970967 GATTCTTAGG
* *
970977 AAAATAAATTTATCGATTTATTTTCTTTTTAAAACAAGA
1 AAAATAAATTTATCAATTTATTTTCTTTTTAAAAAAAGA
971016 AAAATAAATTCTA-CAATTTATTTTC-TTTTACAAAAAAGA
1 AAAATAAATT-TATCAATTTATTTTCTTTTTA-AAAAAAGA
971055 A
1 A
971056 TCATATAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 5 0.14
39 29 0.81
40 2 0.06
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (39 bp):
AAAATAAATTTATCAATTTATTTTCTTTTTAAAAAAAGA
Found at i:971078 original size:97 final size:96
Alignment explanation
Indices: 970884--971136 Score: 266
Period size: 97 Copynumber: 2.6 Consensus size: 96
970874 TTCAAAATAG
* * * * *
970884 AAATAAATCT-AATGATTTATTTCCTTTTACAAAATAGGAAAA-AATC-CAACGATTTATTTTCT
1 AAATAAAT-TGAATAATTTATTTTCTTTTACAAAATAGAAAAATAAACTCAACAATTTATTTTCT
* * ** **
970946 TTTGCATATCAGATCATATAAGATTCTTAGGA
65 TTTACAAAAAAGATCATATAAGATTCAAAGGA
* * * *
970978 AAATAAATT-TATCGATTTATTTTCTTTTTA-AAACA-AGAAAAATAAATTCTACAATTTATTTT
1 AAATAAATTGAAT-AATTTATTTTC-TTTTACAAA-ATAGAAAAATAAACTCAACAATTTATTTT
971040 CTTTTACAAAAAAGAATCATATAAGATTCAAAGGA
63 CTTTTACAAAAAAG-ATCATATAAGATTCAAAGGA
* *
971075 AAATAAATTGAATAATTTATTTTCTTTTACAAAATAGGAAAATAAACTCAACGATTTATTTT
1 AAATAAATTGAATAATTTATTTTCTTTTACAAAATAGAAAAATAAACTCAACAATTTATTTT
971137 ATTTCATAAA
Statistics
Matches: 131, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
93 3 0.02
94 27 0.21
95 8 0.06
96 28 0.21
97 63 0.48
98 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (96 bp):
AAATAAATTGAATAATTTATTTTCTTTTACAAAATAGAAAAATAAACTCAACAATTTATTTTCTT
TTACAAAAAAGATCATATAAGATTCAAAGGA
Found at i:971132 original size:39 final size:39
Alignment explanation
Indices: 971071--971225 Score: 154
Period size: 39 Copynumber: 3.9 Consensus size: 39
971061 TAAGATTCAA
* * **
971071 AGGAAAATAAATTGAATAATTTATTTTCTTTTACAAAAT
1 AGGAAAATAAACTCAACGATTTATTTTCTTTTACAAAAT
* * *
971110 AGGAAAATAAACTCAACGATTTATTTTATTTCATAAAAT
1 AGGAAAATAAACTCAACGATTTATTTTCTTTTACAAAAT
* *
971149 AGGAAAACAAA-TCCAACGATTTA-TTGCATTTTACAAAAT
1 AGGAAAATAAACT-CAACGATTTATTTTC-TTTTACAAAAT
* *
971188 AAGAAAAAAAAAAC-CAACGATTTATTTTCTTTTACAAA
1 -AG-GAAAATAAACTCAACGATTTATTTTCTTTTACAAA
971226 TCAGAATCAT
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
38 3 0.03
39 61 0.64
40 21 0.22
41 10 0.11
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.34
Consensus pattern (39 bp):
AGGAAAATAAACTCAACGATTTATTTTCTTTTACAAAAT
Found at i:971358 original size:137 final size:137
Alignment explanation
Indices: 971112--971372 Score: 289
Period size: 137 Copynumber: 1.9 Consensus size: 137
971102 TACAAAATAG
* * *
971112 GAAAATAAACTCAACGATTTATTTTATTTCATAAAATAGGAAAACAAATCCAACGATTTATTGCA
1 GAAAATAAACTCAAAGATTTATTTTATTTCACAAAATAGGAAAACAAATCCAAAGATTTATTGCA
* * *
971177 TTTTACAAAATAAGAAAAAAAAAACCAACGATTTATTTTCTTTT-ACAAATCAGAATCATGTGAC
66 TTTTACAAAATAAGAAAAAAAAAACCAACGATTTAATTCCTTTTAAAAAAT-AGAATCATGTGAC
971241 ATTCTCAA
130 ATTCTCAA
* * * * * *
971249 GAAAATAAATTCAAAGATTTATTTT-TCCTTTACAAGATAGGAAAATAAATTCAAAGATTTATTT
1 GAAAATAAACTCAAAGATTTATTTTAT--TTCACAAAATAGGAAAACAAATCCAAAGATTTATTG
* * * **
971313 C-TTTT-TAAAATACAGGAAAAAAATA-CAGTGATTTAATTCCTTTTTAAAAAATAGAATCAT
64 CATTTTACAAAATA-AGAAAAAAAAAACCAACGATTTAATTCC-TTTTAAAAAATAGAATCAT
971373 ATAAGAAAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
136 18 0.18
137 49 0.48
138 35 0.34
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (137 bp):
GAAAATAAACTCAAAGATTTATTTTATTTCACAAAATAGGAAAACAAATCCAAAGATTTATTGCA
TTTTACAAAATAAGAAAAAAAAAACCAACGATTTAATTCCTTTTAAAAAATAGAATCATGTGACA
TTCTCAA
Found at i:971571 original size:58 final size:56
Alignment explanation
Indices: 971405--971699 Score: 230
Period size: 58 Copynumber: 5.2 Consensus size: 56
971395 TTATTTCTTT
* * * *
971405 ATTCAAGATTC-CTAAGAAGATAAATTTAACAATTTATTTT-TTTCAAAAGATAGAATC
1 ATTCAAGATTCTC-AAGAA-ATAAATTCAACTATTTATTTTCTTAC-AAAGTTAGAATC
* * **
971462 A-TCAACGGTTCTCAAG-AAT-AATT-GA-TAATTTATTTATCTTATGAAGTTAGAATC
1 ATTCAA-GATTCTCAAGAAATAAATTCAACT-ATTTATTT-TCTTACAAAGTTAGAATC
*
971516 ATTCAAGATTCTCAAGAAAATAAATTCAACTATTTATTTTCGTTACAAAGTTAGAATTG
1 ATTCAAGATTCTCAAG-AAATAAATTCAACTATTTATTTTC-TTACAAAGTTAGAA-TC
* * * * *
971575 A-TGAATATCCTCAACGAAATAAATTCAACTATTTGTTTTCCTTACAAAAGTTAGAACC
1 ATTCAAGATTCTCAA-GAAATAAATTCAACTATTTATTTT-CTTAC-AAAGTTAGAATC
* * * *
971633 ATTCAAG-TTTTCAAGGAAATAAATTCAACAATTTATTTTCCTAATAAAGTTAGAATC
1 ATTCAAGATTCTCAA-GAAATAAATTCAACTATTTATTTT-CTTACAAAGTTAGAATC
*
971690 ATTCTAGATT
1 ATTCAAGATT
971700 ATTTTCCTCA
Statistics
Matches: 191, Mismatches: 29, Indels: 35
0.75 0.11 0.14
Matches are distributed among these distances:
53 9 0.05
54 25 0.13
55 8 0.04
56 8 0.04
57 31 0.16
58 92 0.48
59 18 0.09
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (56 bp):
ATTCAAGATTCTCAAGAAATAAATTCAACTATTTATTTTCTTACAAAGTTAGAATC
Found at i:971773 original size:91 final size:91
Alignment explanation
Indices: 971610--971781 Score: 249
Period size: 91 Copynumber: 1.9 Consensus size: 91
971600 CAACTATTTG
* *
971610 TTTTCCTTACAAAAGTTAGAACCATTCAAGTTTTCAAGGAAATAAATTCAACAATTTATTTTCCT
1 TTTTCCTCACAAAAGTTAGAACCATTCAAGTTCTCAAGGAAATAAATTCAACAATTTATTTTCCT
*
971675 AATAAAGTTAGAATCATTCTAGATTA
66 AACAAAGTTAGAATCATTCTAGATTA
* * *
971701 TTTTCCTCAC-AAAGTTAGAATCATTTAAGATTCTCAAGTAAATAAATTCAACAATTTA-TTTCT
1 TTTTCCTCACAAAAGTTAGAACCATTCAAG-TTCTCAAGGAAATAAATTCAACAATTTATTTTC-
*
971764 CTTACAAAGTTAGAATCA
64 CTAACAAAGTTAGAATCA
971782 ACGCAAGATT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
90 21 0.29
91 51 0.71
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (91 bp):
TTTTCCTCACAAAAGTTAGAACCATTCAAGTTCTCAAGGAAATAAATTCAACAATTTATTTTCCT
AACAAAGTTAGAATCATTCTAGATTA
Found at i:972009 original size:45 final size:45
Alignment explanation
Indices: 971939--972165 Score: 210
Period size: 45 Copynumber: 5.1 Consensus size: 45
971929 GAATTAGTCC
* * * * *
971939 TTTAACTTTAGCAACCCACTAATCAAAAGGAATTAATCCTTTGAT
1 TTTAATTTTTGCAATCCAATAATCAAAAGGAACTAATCCTTTGAT
* * *
971984 TTTAATTTTTGCAGTCCAATAATCAAAAGAAACTAATACTTTGAT
1 TTTAATTTTTGCAATCCAATAATCAAAAGGAACTAATCCTTTGAT
** * * **
972029 TTTAATCCTTGCAATCCAAAAATTGAAAAGGAACTAAT-AATTGAT
1 TTTAATTTTTGCAATCCAATAA-TCAAAAGGAACTAATCCTTTGAT
** * * *
972074 TTTAATTTCCGC--GCCTGAGTAATCAAAAGTAA-TAATCCTTTGAT
1 TTTAATTTTTGCAATCC--AATAATCAAAAGGAACTAATCCTTTGAT
* *
972118 TTTAATTTTGGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
1 TTTAATTTTTGCAATCCAATAATCAAAAGGAACTAATCCTTTGAT
972163 TTT
1 TTT
972166 GCTTATGGTA
Statistics
Matches: 143, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
43 6 0.04
44 36 0.25
45 86 0.60
46 15 0.10
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (45 bp):
TTTAATTTTTGCAATCCAATAATCAAAAGGAACTAATCCTTTGAT
Found at i:972179 original size:45 final size:44
Alignment explanation
Indices: 971949--972191 Score: 177
Period size: 45 Copynumber: 5.4 Consensus size: 44
971939 TTTAACTTTA
* * *
971949 GCAACCCACTAATCAAAAGGAATTAATCCTTTGATTTTAATTTTT
1 GCAACCCAATAATCAAAAGGAA-TAATCCTTTGATTTTAATTATG
** * * ** *
971994 GCAGTCCAATAATCAAAAGAAACTAATACTTTGATTTTAATCCTT
1 GCAACCCAATAATCAAAAGGAA-TAATCCTTTGATTTTAATTATG
* * * ** *
972039 GCAATCCAAAAATTGAAAAGGAACTAAT-AATTGATTTTAATT-TCC
1 GCAACCCAATAA-TCAAAAGGAA-TAATCCTTTGATTTTAATTAT-G
* * * * *
972084 GC-GCCTGAGTAATCAAAAGTAATAATCCTTTGATTTTAATTTTG
1 GCAACC-CAATAATCAAAAGGAATAATCCTTTGATTTTAATTATG
**
972128 GCAACCCAATAATCAAAAGGAACTAATCCTTTGATTTTGCTTATG
1 GCAACCCAATAATCAAAAGGAA-TAATCCTTTGATTTTAATTATG
* *
972173 GTAACCCCATAATCAAAAG
1 GCAACCCAATAATCAAAAG
972192 TATTGGATTA
Statistics
Matches: 156, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
43 4 0.03
44 37 0.24
45 102 0.65
46 13 0.08
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (44 bp):
GCAACCCAATAATCAAAAGGAATAATCCTTTGATTTTAATTATG
Found at i:974017 original size:23 final size:23
Alignment explanation
Indices: 973987--974033 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
973977 TATATGTTGC
973987 TACTTATGTTACCTAGACTATTT
1 TACTTATGTTACCTAGACTATTT
974010 TACTTATGTTACCTAGACTATTT
1 TACTTATGTTACCTAGACTATTT
974033 T
1 T
974034 TTTCCTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.49
Consensus pattern (23 bp):
TACTTATGTTACCTAGACTATTT
Found at i:977592 original size:13 final size:13
Alignment explanation
Indices: 977571--977622 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
977561 AATGACGCTC
977571 AATGCGCGTCATA
1 AATGCGCGTCATA
*
977584 AATGAGCGTCATA
1 AATGCGCGTCATA
* *
977597 AATGTGTGTCATA
1 AATGCGCGTCATA
977610 AATGCGCGTCATA
1 AATGCGCGTCATA
977623 GATTTATGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:982508 original size:45 final size:45
Alignment explanation
Indices: 982441--982669 Score: 316
Period size: 45 Copynumber: 5.1 Consensus size: 45
982431 GAACTAATAT
* *
982441 TGAAATGCATAGCGGTGCATTATCGGCATGAAAGGATGCCATAAA
1 TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
* * *
982486 TGAAATGCATAATGGTGAATTATCGACATGCAAGGATGCCATAAA
1 TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
* *
982531 TGAAATGCATAAAGGTGCATTATCGACATGAAATGATGCCATAAA
1 TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
* * *
982576 TGAAATGCATAACAGTGCATCATCGACATGAAATGATGCCATAAA
1 TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
* * * * *
982621 TGAAATGCATAACGGTTCA-CATCGACTTGGAGGGATGCCATAAA
1 TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
982665 TGAAA
1 TGAAA
982670 ATAACAAATA
Statistics
Matches: 166, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
44 26 0.16
45 140 0.84
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.23
Consensus pattern (45 bp):
TGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAA
Found at i:985162 original size:45 final size:45
Alignment explanation
Indices: 985106--985339 Score: 326
Period size: 45 Copynumber: 5.2 Consensus size: 45
985096 AACTGAACTA
* * *
985106 ATAATTGAAATGCATAGCGGTGCATTATCGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
* * *
985151 ATAAATGAAATGCATAATGGTGAATTATCGACATGCAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
* *
985196 ATAAATGAAATGCATAAAGGTGCATTATCGACATGAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
* * *
985241 ATAAATGAAATGCATAACAGTGCATCATCGACATGAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
* * * *
985286 ATAAATGAAATGCATAACGGTGCA-CATCGACTTGGAGGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
985330 ATAAATGAAA
1 ATAAATGAAA
985340 ATAAAGAATA
Statistics
Matches: 171, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 26 0.15
45 145 0.85
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (45 bp):
ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
Found at i:989010 original size:55 final size:55
Alignment explanation
Indices: 988857--989074 Score: 233
Period size: 55 Copynumber: 3.9 Consensus size: 55
988847 TGAATATTAC
* * ** * * *
988857 AACTCATTATAAATTGTGTGGTTTTGCACACATAGTGCCGATACGGTAATTCACAA
1 AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACGGAAATTCA-TA
* * * *
988913 ACTACTCATTATGAATTACT-T-AGGTTGCATACATAGTACCAATACGGAAATTCATA
1 A--ACTCATTATGAATT-TTGTGGGGTTGCACACATAGTGCCAATACGGAAATTCATA
* *
988969 AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACAGAAATTAATA
1 AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACGGAAATTCATA
* * * *
989024 AATTCATTATGAATTTCGTGGGGTTGCACACATATTTCCAATACGGAAATT
1 AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACGGAAATT
989075 GCAATATATA
Statistics
Matches: 136, Mismatches: 21, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.01
54 15 0.11
55 76 0.56
56 3 0.02
57 26 0.19
58 14 0.10
59 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (55 bp):
AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACGGAAATTCATA
Found at i:989089 original size:112 final size:111
Alignment explanation
Indices: 988857--989074 Score: 269
Period size: 112 Copynumber: 2.0 Consensus size: 111
988847 TGAATATTAC
** * * * *
988857 AACTCATTATAAATTGTGTGGTTTTGCACACATAGTGCCGATACGGTAATTCACAAACTACTCAT
1 AACTCATTATAAATTGTGTGGGGTTGCACACATAGTGCCAATACAGAAATTAACAAACTA-TCAT
* *
988922 TATGAATTACTTAGGTTGCATACATAGTACCAATACGGAAATTCATA
65 TATGAATTACTGAGGTTGCACACATAGTACCAATACGGAAATTCATA
* * *
988969 AACTCATTATGAATTTTGTGGGGTTGCACACATAGTGCCAATACAGAAATTAATAAA-T-TCATT
1 AACTCATTATAAATTGTGTGGGGTTGCACACATAGTGCCAATACAGAAATTAACAAACTATCATT
* * * *
989032 ATGAATTTCGTGGGGTTGCACACATATTTCCAATACGGAAATT
66 ATGAATTAC-TGAGGTTGCACACATAGTACCAATACGGAAATT
989075 GCAATATATA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
109 13 0.14
110 28 0.31
111 1 0.01
112 48 0.53
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (111 bp):
AACTCATTATAAATTGTGTGGGGTTGCACACATAGTGCCAATACAGAAATTAACAAACTATCATT
ATGAATTACTGAGGTTGCACACATAGTACCAATACGGAAATTCATA
Found at i:990829 original size:2 final size:2
Alignment explanation
Indices: 990822--990863 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
990812 ATCTGGTTTG
990822 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
990864 CACTGAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1002915 original size:2 final size:2
Alignment explanation
Indices: 1002908--1002988 Score: 132
Period size: 2 Copynumber: 42.0 Consensus size: 2
1002898 ATATGGTCTA
*
1002908 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT CT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1002948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1002989 TTCACTGGAA
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
1 3 0.04
2 71 0.96
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1003713 original size:21 final size:21
Alignment explanation
Indices: 1003687--1003737 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
1003677 ATTTTTCTTA
1003687 TTTTATAATT-ACTATTTAAAC
1 TTTTATAATTAACTATTT-AAC
* *
1003708 TTTTATAATTAATTATTTTAC
1 TTTTATAATTAACTATTTAAC
1003729 TTTTATAAT
1 TTTTATAAT
1003738 GTTAATTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTATAATTAACTATTTAAC
Found at i:1006682 original size:15 final size:15
Alignment explanation
Indices: 1006662--1006692 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1006652 GTCAACTAGA
1006662 TTAAGAAATCTCCTC
1 TTAAGAAATCTCCTC
1006677 TTAAGAAATCTCCTC
1 TTAAGAAATCTCCTC
1006692 T
1 T
1006693 ATATCCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (15 bp):
TTAAGAAATCTCCTC
Found at i:1009781 original size:23 final size:23
Alignment explanation
Indices: 1009749--1009794 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1009739 GTTTTCAGGT
*
1009749 TGGACATGCAGCACTCCACGTCA
1 TGGACATGCAGCACGCCACGTCA
*
1009772 TGGACTTGCAGCACGCCACGTCA
1 TGGACATGCAGCACGCCACGTCA
1009795 ATTAAAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.17
Consensus pattern (23 bp):
TGGACATGCAGCACGCCACGTCA
Found at i:1009947 original size:21 final size:21
Alignment explanation
Indices: 1009922--1009964 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1009912 TTCAAAACAT
1009922 GGATGAAGAAAATGAGAATCG
1 GGATGAAGAAAATGAGAATCG
1009943 GGATGAAGAAAATGAGAATCG
1 GGATGAAGAAAATGAGAATCG
1009964 G
1 G
1009965 ATGTGCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.35, T:0.14
Consensus pattern (21 bp):
GGATGAAGAAAATGAGAATCG
Found at i:1010356 original size:26 final size:26
Alignment explanation
Indices: 1010327--1010378 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1010317 TATGGGTTAA
1010327 TAGACTTGTGTTAGAATTGAAGATGC
1 TAGACTTGTGTTAGAATTGAAGATGC
1010353 TAGACTTGTGTTAGAATTGAAGATGC
1 TAGACTTGTGTTAGAATTGAAGATGC
1010379 AATGTATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TAGACTTGTGTTAGAATTGAAGATGC
Done.