Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008855.1 Hibiscus syriacus cultivar Beakdansim tig00112072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1316246
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 5
Found at i:858809 original size:70 final size:69
Alignment explanation
Indices: 858655--858810 Score: 177
Period size: 70 Copynumber: 2.2 Consensus size: 69
858645 TGTTCATATT
* * *
858655 CGTTTATTTATTGTTCACGAACATGTTCATTTAATGTTCACAAACGTGTTCATGAACATATTCGT
1 CGTTTATTTAATGTTCACGAACATGTCCATTTAATGTTCACAAACGCGTTCATGAACATATTCGT
858720 TTAG
66 TTAG
* ** ** * * * * *
858724 TGTTCGTTTAATGTTCGTGAACGTGTCCGTTTATATGTTCACGAACGCGTTCATGAACATGTTTG
1 CGTTTATTTAATGTTCACGAACATGTCCATTTA-ATGTTCACAAACGCGTTCATGAACATATTCG
858789 TTTAG
65 TTTAG
*
858794 CGTTTATTTAGTGTTCA
1 CGTTTATTTAATGTTCA
858811 ATTAGTATTC
Statistics
Matches: 68, Mismatches: 18, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
69 24 0.35
70 44 0.65
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (69 bp):
CGTTTATTTAATGTTCACGAACATGTCCATTTAATGTTCACAAACGCGTTCATGAACATATTCGT
TTAG
Found at i:858975 original size:13 final size:13
Alignment explanation
Indices: 858957--859024 Score: 91
Period size: 13 Copynumber: 5.2 Consensus size: 13
858947 TGCGACATAA
858957 ATTTATGACGCGC
1 ATTTATGACGCGC
*
858970 ATTTATGACACGC
1 ATTTATGACGCGC
* *
858983 ATTTATGACACGT
1 ATTTATGACGCGC
*
858996 ATTTATGACGAGC
1 ATTTATGACGCGC
*
859009 ATTTATGACGCTC
1 ATTTATGACGCGC
859022 ATT
1 ATT
859025 GCGCGTCATT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:858979 original size:26 final size:26
Alignment explanation
Indices: 858950--859004 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
858940 GCAATTGTGC
* *
858950 GACATAAATTTATGACGCGCATTTAT
1 GACACAAATTTATGACACGCATTTAT
** *
858976 GACACGCATTTATGACACGTATTTAT
1 GACACAAATTTATGACACGCATTTAT
859002 GAC
1 GAC
859005 GAGCATTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (26 bp):
GACACAAATTTATGACACGCATTTAT
Found at i:859188 original size:2 final size:2
Alignment explanation
Indices: 859181--859218 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
859171 TGTCGTAAAT
859181 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
859219 TGTAGATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:861959 original size:18 final size:18
Alignment explanation
Indices: 861933--861967 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
861923 CCGATCGATC
*
861933 AAAAGAAAGCAAAAGAAG
1 AAAAGAAAGAAAAAGAAG
*
861951 AAAATAAAGAAAAAGAA
1 AAAAGAAAGAAAAAGAA
861968 CAAAGTGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (18 bp):
AAAAGAAAGAAAAAGAAG
Found at i:864206 original size:2 final size:2
Alignment explanation
Indices: 864199--864230 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
864189 AATGAAATCA
864199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
864231 GTGTGTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:866926 original size:14 final size:13
Alignment explanation
Indices: 866909--866947 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
866899 AACGAACGTA
866909 AATGAATATAAACG
1 AATGAA-ATAAACG
866923 AATGAACATAAACG
1 AATGAA-ATAAACG
*
866937 AACGAAATAAA
1 AATGAAATAAA
866948 ATTAATTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.62, C:0.10, G:0.13, T:0.15
Consensus pattern (13 bp):
AATGAAATAAACG
Found at i:867062 original size:16 final size:16
Alignment explanation
Indices: 867041--867079 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
867031 TTTTATTTAG
867041 GTTTAAA-ATTAATTGA
1 GTTTAAATATTAA-TGA
867057 GTTTAAAATATTAATGA
1 GTTT-AAATATTAATGA
867074 GTTTAA
1 GTTTAA
867080 GCTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 10 0.48
18 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (16 bp):
GTTTAAATATTAATGA
Found at i:868362 original size:34 final size:35
Alignment explanation
Indices: 868288--868366 Score: 97
Period size: 36 Copynumber: 2.3 Consensus size: 35
868278 AAGTATACCT
*
868288 AAAACTTAATTTTGTATCATTTTAGTACTGCCGTTA
1 AAAATTTAATTTTGTATCATTTTAGTAC-GCCGTTA
* * * *
868324 AAAATTTAGTTTTGTTTTATTTTAGTAC-CCGTTC
1 AAAATTTAATTTTGTATCATTTTAGTACGCCGTTA
868358 AAAATTTAA
1 AAAATTTAA
868367 CGTTAAGTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
34 13 0.35
36 24 0.65
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.47
Consensus pattern (35 bp):
AAAATTTAATTTTGTATCATTTTAGTACGCCGTTA
Found at i:868377 original size:36 final size:35
Alignment explanation
Indices: 868306--868377 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
868296 ATTTTGTATC
**
868306 ATTTTAGTACTGCCGTTAAAAATTTAGTTTTGTTTT
1 ATTTTAGTAC-GCCGTTAAAAATTTAGTTAAGTTTT
*
868342 ATTTTAGTAC-CCGTTCAAAATTTAACGTTAAGTTTT
1 ATTTTAGTACGCCGTTAAAAATTT-A-GTTAAGTTTT
868378 GAAAAAATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
34 12 0.39
35 1 0.03
36 18 0.58
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (35 bp):
ATTTTAGTACGCCGTTAAAAATTTAGTTAAGTTTT
Found at i:873365 original size:18 final size:19
Alignment explanation
Indices: 873338--873375 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
873328 GGGTAATAAT
873338 ATAAGTAATGAAATAAATA
1 ATAAGTAATGAAATAAATA
*
873357 ATAAG-AATGAAATGAATA
1 ATAAGTAATGAAATAAATA
873375 A
1 A
873376 ATAAAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (19 bp):
ATAAGTAATGAAATAAATA
Found at i:877583 original size:18 final size:18
Alignment explanation
Indices: 877562--877622 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
877552 TTTGAACTTC
*
877562 TCTTTTCTT-TTCTTTTCT
1 TCTTTTCTTATT-TTCTCT
877580 TCTTTTCTTATTTTCTCT
1 TCTTTTCTTATTTTCTCT
*
877598 TCTTTTCTGATTTTTCTCT
1 TCTTTTCTTA-TTTTCTCT
877617 TCTTTT
1 TCTTTT
877623 TGCACTCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
18 23 0.59
19 16 0.41
ACGTcount: A:0.03, C:0.21, G:0.02, T:0.74
Consensus pattern (18 bp):
TCTTTTCTTATTTTCTCT
Found at i:877614 original size:19 final size:18
Alignment explanation
Indices: 877577--877622 Score: 74
Period size: 19 Copynumber: 2.5 Consensus size: 18
877567 TCTTTTCTTT
*
877577 TCTTCTTTTCTTATTTTC
1 TCTTCTTTTCTGATTTTC
877595 TCTTCTTTTCTGATTTTTC
1 TCTTCTTTTCTGA-TTTTC
877614 TCTTCTTTT
1 TCTTCTTTT
877623 TGCACTCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.72
Consensus pattern (18 bp):
TCTTCTTTTCTGATTTTC
Found at i:882110 original size:11 final size:11
Alignment explanation
Indices: 882094--882120 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
882084 CTGTTTTGTT
882094 GATTTCGAACA
1 GATTTCGAACA
882105 GATTTCGAACA
1 GATTTCGAACA
882116 GATTT
1 GATTT
882121 TCTTCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (11 bp):
GATTTCGAACA
Found at i:897906 original size:32 final size:32
Alignment explanation
Indices: 897870--897931 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 32
897860 TCTAAATATG
897870 ACACTAACTCT-TATGTGCATTATCTGAATGCA
1 ACACTAACTCTGT-TGTGCATTATCTGAATGCA
897902 ACACTAACTCTGTTGTGCATTATCTGAATG
1 ACACTAACTCTGTTGTGCATTATCTGAATG
897932 TAATATTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (32 bp):
ACACTAACTCTGTTGTGCATTATCTGAATGCA
Found at i:903075 original size:29 final size:29
Alignment explanation
Indices: 903029--903088 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
903019 CAGGCGGATA
*
903029 TTACCCTAGAGAATATATCAA-GGTTGAGG
1 TTACCCTAGAGAACATAT-AAGGGTTGAGG
903058 TTACCCTAGAGAACATATAAGGGTTGAGG
1 TTACCCTAGAGAACATATAAGGGTTGAGG
903087 TT
1 TT
903089 TCTATAACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (29 bp):
TTACCCTAGAGAACATATAAGGGTTGAGG
Found at i:911313 original size:2 final size:2
Alignment explanation
Indices: 911306--911332 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
911296 TCTTGCCTAT
911306 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
911333 GAGAAAGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:912561 original size:13 final size:13
Alignment explanation
Indices: 912545--912571 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
912535 CAATTAAATT
912545 ATTTTAGAAATAA
1 ATTTTAGAAATAA
912558 ATTTTAGAAATAA
1 ATTTTAGAAATAA
912571 A
1 A
912572 GATTAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (13 bp):
ATTTTAGAAATAA
Found at i:924396 original size:11 final size:11
Alignment explanation
Indices: 924370--924405 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
924360 TTTTAGGGAC
*
924370 TTTAAAGGTTAT
1 TTTAAAGG-AAT
924382 TTTAAAGGAAT
1 TTTAAAGGAAT
924393 TTTAAAGGAAT
1 TTTAAAGGAAT
924404 TT
1 TT
924406 AAGTTAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 15 0.65
12 8 0.35
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (11 bp):
TTTAAAGGAAT
Found at i:932319 original size:16 final size:17
Alignment explanation
Indices: 932293--932324 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
932283 GGTTAGTAAA
932293 AAAATAAAAACAAAAGT
1 AAAATAAAAACAAAAGT
932310 AAAA-AAAAACAAAAG
1 AAAATAAAAACAAAAG
932325 AAAGAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.81, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
AAAATAAAAACAAAAGT
Found at i:934385 original size:17 final size:17
Alignment explanation
Indices: 934365--934423 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
934355 TTTAGGGAAG
934365 TAGTTCATTTATGCATC
1 TAGTTCATTTATGCATC
* *
934382 TAGTT-ATTTAAT-AAAC
1 TAGTTCATTT-ATGCATC
* * *
934398 TAATTCATTCATGCATT
1 TAGTTCATTTATGCATC
934415 TAGTTCATT
1 TAGTTCATT
934424 GAATAAAGTT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (17 bp):
TAGTTCATTTATGCATC
Found at i:934437 original size:18 final size:18
Alignment explanation
Indices: 934414--934459 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
934404 ATTCATGCAT
934414 TTAGTTCATTGAATAAAG
1 TTAGTTCATTGAATAAAG
*
934432 TTAGTTCATTGAATAATG
1 TTAGTTCATTGAATAAAG
*
934450 TTATTTCATT
1 TTAGTTCATT
934460 AATCAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (18 bp):
TTAGTTCATTGAATAAAG
Found at i:936264 original size:17 final size:17
Alignment explanation
Indices: 936244--936292 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
936234 TAAAGTTAGT
936244 TCATTAATTAAACTAGC
1 TCATTAATTAAACTAGC
* * *
936261 TCATAAATCAAACTAGT
1 TCATTAATTAAACTAGC
*
936278 TCATTTATTAAACTA
1 TCATTAATTAAACTA
936293 ACTCTAATTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (17 bp):
TCATTAATTAAACTAGC
Found at i:936720 original size:25 final size:25
Alignment explanation
Indices: 936692--936746 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
936682 AAGCATTCAA
936692 GGCTGATTTAATCATCCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
*
936717 GGCTGATTTAATCATTCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
936742 GGCTG
1 GGCTG
936747 TTCATATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (25 bp):
GGCTGATTTAATCATCCAAACCAAG
Found at i:938008 original size:21 final size:17
Alignment explanation
Indices: 937965--938007 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
937955 CTCATCTTCG
937965 TTCTTTCTTGTAGCCAA
1 TTCTTTCTTGTAGCCAA
937982 TTCTTTCTTGTAGCCAA
1 TTCTTTCTTGTAGCCAA
937999 TTCTTTCTT
1 TTCTTTCTT
938008 TACTTACACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.14, C:0.23, G:0.09, T:0.53
Consensus pattern (17 bp):
TTCTTTCTTGTAGCCAA
Found at i:939693 original size:17 final size:17
Alignment explanation
Indices: 939673--939721 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
939663 TAAAGTTAGT
939673 TCATTAATTAAACTAGC
1 TCATTAATTAAACTAGC
* * *
939690 TCATAAATCAAACTAGT
1 TCATTAATTAAACTAGC
*
939707 TCATTTATTAAACTA
1 TCATTAATTAAACTA
939722 ACTCTTAACT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (17 bp):
TCATTAATTAAACTAGC
Found at i:940151 original size:25 final size:25
Alignment explanation
Indices: 940123--940171 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
940113 AAGTATTCAA
940123 GGCTGATTTAATCATCCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
*
940148 GGCTGATTTAATCATTCAAACCAA
1 GGCTGATTTAATCATCCAAACCAA
940172 AGCAATGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
GGCTGATTTAATCATCCAAACCAAG
Found at i:947258 original size:34 final size:34
Alignment explanation
Indices: 947175--947260 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
947165 CTAATTCTCA
* *
947175 TTTCAGGCAGAGTTTCAGTATGAAACGGGCAAAAT
1 TTTC-GGCAGAGTTTTAGTATGAAACAGGCAAAAT
* * *
947210 TTTGGGCAGAGTTTTAGTATGAAACATGCAGAAT
1 TTTCGGCAGAGTTTTAGTATGAAACAGGCAAAAT
*
947244 TTTCGGTAGAGTTTTAG
1 TTTCGGCAGAGTTTTAG
947261 CATAAACGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (34 bp):
TTTCGGCAGAGTTTTAGTATGAAACAGGCAAAAT
Found at i:948293 original size:2 final size:2
Alignment explanation
Indices: 948286--948314 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
948276 TTGCCTCAAT
948286 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
948315 TCTCTCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:948426 original size:3 final size:3
Alignment explanation
Indices: 948420--948454 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
948410 TAATATTCAT
948420 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
948455 AAAATATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:951492 original size:23 final size:23
Alignment explanation
Indices: 951464--951522 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
951454 CAAATGTAAT
*
951464 TTTTTGAAAATATATAGTAAATG
1 TTTTTGAAAATATATAATAAATG
** *
951487 TTTTTGAAAACGTATAATATATG
1 TTTTTGAAAATATATAATAAATG
*
951510 GTTTTGAAAATAT
1 TTTTTGAAAATAT
951523 TTTTAGAACA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (23 bp):
TTTTTGAAAATATATAATAAATG
Found at i:951703 original size:76 final size:75
Alignment explanation
Indices: 951535--951757 Score: 260
Period size: 76 Copynumber: 3.0 Consensus size: 75
951525 TTAGAACACT
* * *
951535 AAAAAT-ATATTTGAAAACGTATAATATATAGTTTTT-TAAAAATATTTTTGAAAATGTATAATA
1 AAAAATAAT-TTTAAAAACGTATAATATATAGTTTTTAAAAAAATATTTTTGAAAACGTATAATA
951598 TATAGTTTTTAA
65 TATAGTTTTT-A
* * * * *
951610 AAAAATATTTTTGAAAACATATAACATATAGTTTTTAAAAAAATATTTTTTTGGAAACGTATAAT
1 AAAAATAATTTTAAAAACGTATAATATATAGTTTTTAAAAAAATA--TTTTTGAAAACGTATAAT
951675 ATATAGTTTTT-
64 ATATAGTTTTTA
* * **
951686 TAAAATAATTTTAAAAACGTATAATATATAATTTTT--AAAAATACATTTGAAAACGTATAATAT
1 AAAAATAATTTTAAAAACGTATAATATATAGTTTTTAAAAAAATATTTTTGAAAACGTATAATAT
951749 ATA-TTTTTA
66 ATAGTTTTTA
951758 TTTTAAAATG
Statistics
Matches: 128, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
71 5 0.04
72 20 0.16
74 7 0.05
75 31 0.24
76 38 0.30
78 27 0.21
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (75 bp):
AAAAATAATTTTAAAAACGTATAATATATAGTTTTTAAAAAAATATTTTTGAAAACGTATAATAT
ATAGTTTTTA
Found at i:951711 original size:36 final size:36
Alignment explanation
Indices: 951534--951757 Score: 279
Period size: 36 Copynumber: 6.1 Consensus size: 36
951524 TTTAGAACAC
*
951534 TAAAAATATATTTGAAAACGTATAATATATAGTTTTT
1 TAAAAATATTTTTGAAAACGTATAATATATAG-TTTT
*
951571 TAAAAATATTTTTGAAAATGTATAATATATAGTTTT
1 TAAAAATATTTTTGAAAACGTATAATATATAGTTTT
* *
951607 TAAAAAAATATTTTTGAAAACATATAACATATAGTTTT
1 T--AAAAATATTTTTGAAAACGTATAATATATAGTTTT
*
951645 TAAAAAAATATTTTTTTGGAAACGTATAATATATAGTTTT
1 T--AAAAATA--TTTTTGAAAACGTATAATATATAGTTTT
* * * *
951685 TTAAAATAATTTTAAAAACGTATAATATATAATTTT
1 TAAAAATATTTTTGAAAACGTATAATATATAGTTTT
**
951721 TAAAAATACATTTGAAAACGTATAATATATA-TTTT
1 TAAAAATATTTTTGAAAACGTATAATATATAGTTTT
951756 TA
1 TA
951758 TTTTAAAATG
Statistics
Matches: 166, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
35 6 0.04
36 56 0.34
37 30 0.18
38 48 0.29
40 26 0.16
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (36 bp):
TAAAAATATTTTTGAAAACGTATAATATATAGTTTT
Found at i:951819 original size:3 final size:3
Alignment explanation
Indices: 951811--951881 Score: 56
Period size: 3 Copynumber: 21.7 Consensus size: 3
951801 TATATAGTTT
951811 TTA TTA TTA -TA TTTA TTTA TTA TATA TTA TTA TTA TTCA TTA TATA
1 TTA TTA TTA TTA -TTA -TTA TTA T-TA TTA TTA TTA TT-A TTA T-TA
951857 TT- TTA TTTA TTTA TTA TTTA TTA TT
1 TTA TTA -TTA -TTA TTA -TTA TTA TT
951882 GTTTCTTTTG
Statistics
Matches: 60, Mismatches: 0, Indels: 16
0.79 0.00 0.21
Matches are distributed among these distances:
2 4 0.07
3 31 0.52
4 25 0.42
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:951832 original size:13 final size:13
Alignment explanation
Indices: 951810--951873 Score: 62
Period size: 13 Copynumber: 4.9 Consensus size: 13
951800 TTATATAGTT
951810 TTTA-TTATTATA
1 TTTATTTATTATA
951822 TTTATTTATTATA
1 TTTATTTATTATA
951835 TATTA-TTATTAT-
1 T-TTATTTATTATA
* *
951847 TCATTATATATTTTA
1 T--TTATTTATTATA
951862 TTTATTTATTAT
1 TTTATTTATTAT
951874 TTATTATTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
12 5 0.12
13 29 0.67
14 8 0.19
15 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTATTTATTATA
Found at i:951840 original size:20 final size:20
Alignment explanation
Indices: 951811--951880 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
951801 TATATAGTTT
951811 TTAT-TATTATATTTATTTA
1 TTATATATTATATTTATTTA
*
951830 TTATATATTAT-TATTATTCA
1 TTATATATTATAT-TTATTTA
*
951850 TTATATATTTTATTTATTTA
1 TTATATATTATATTTATTTA
*
951870 TTATTTATTAT
1 TTATATATTAT
951881 TGTTTCTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
19 5 0.12
20 37 0.86
21 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATATATTATATTTATTTA
Found at i:951862 original size:9 final size:10
Alignment explanation
Indices: 951792--951881 Score: 71
Period size: 10 Copynumber: 9.0 Consensus size: 10
951782 ATTTTTGAAA
*
951792 ATATAGTATT
1 ATATATTATT
*
951802 ATATAGTTTTT
1 ATATA-TTATT
951813 AT-TATTA-T
1 ATATATTATT
*
951821 ATTTATTTATT
1 ATATA-TTATT
951832 ATATATTATT
1 ATATATTATT
951842 AT-TATTCATT
1 ATATATT-ATT
951852 ATATATT-TT
1 ATATATTATT
*
951861 ATTTATTTATT
1 ATATA-TTATT
*
951872 ATTTATTATT
1 ATATATTATT
951882 GTTTCTTTTG
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
8 3 0.04
9 14 0.21
10 29 0.43
11 21 0.31
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (10 bp):
ATATATTATT
Found at i:951881 original size:7 final size:7
Alignment explanation
Indices: 951810--951881 Score: 69
Period size: 7 Copynumber: 10.3 Consensus size: 7
951800 TTATATAGTT
951810 TTTATTA
1 TTTATTA
951817 TTATATTTA
1 TT-TA-TTA
951826 TTTATTA
1 TTTATTA
*
951833 TATATTA
1 TTTATTA
951840 -TTATTA
1 TTTATTA
*
951846 TTCATTA
1 TTTATTA
*
951853 TATA-T-
1 TTTATTA
951858 TTTATTTA
1 TTTA-TTA
951866 TTTATTA
1 TTTATTA
951873 TTTATTA
1 TTTATTA
951880 TT
1 TT
951882 GTTTCTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 3 0.06
6 6 0.11
7 31 0.58
8 8 0.15
9 5 0.09
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:953242 original size:6 final size:6
Alignment explanation
Indices: 953231--953258 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
953221 ATTTAATATT
953231 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
953259 TTTTCTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:954513 original size:20 final size:20
Alignment explanation
Indices: 954490--954528 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
954480 GGGATTGATC
954490 CACAAAAAATGTT-CATTAAA
1 CACAAAAAAT-TTGCATTAAA
*
954510 CACAAATAATTTGCATTAA
1 CACAAAAAATTTGCATTAA
954529 TGGACAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.28
Consensus pattern (20 bp):
CACAAAAAATTTGCATTAAA
Found at i:963031 original size:369 final size:375
Alignment explanation
Indices: 962331--963068 Score: 1316
Period size: 369 Copynumber: 2.0 Consensus size: 375
962321 AACAAGATAA
962331 TTGATGCTGCTTGTGAACAGTTTAACATAAATTATCACAACTCTACTGCTTATAAAACAAATATG
1 TTGATGCTGCTTGTGAACAGTTTAACATAAATTATCACAACTCTACTGCTTATAAAACAAATATG
* *
962396 AATGGAGTGGTAGAAGTAACAAACAAAAACATCAAGAAAATAGTGGAGAAAACGGCTGAGACATA
66 AATGGAGCGGTAGAAGCAACAAACAAAAACATCAAGAAAATAGTGGAGAAAACGGCTGAGACATA
* *
962461 CAAGGATTGGCATGAGAAAATTACCTTTTACTTTGTTGCTTACCGAACTTCGGTACAAACTTTGA
131 CAAGGATTGGCACGAGAAAATTACCTTTTACTTTGTTGCTTACCGAACTTCGATACAAACTTTGA
962526 CTTGGCAACCCCATTTTCCTTAGCATATGGGATAGAGGCAGTATTTCCTATTGAGGTAGAGATCT
196 CTTGGCAACCCCATTTTCCTTAGCATATGGGATAGAGGCAGTATTTCCTATTGAGGTAGAGATCT
962591 CATCACTCCGGGTTTTTTAGGAAGTTAATTGGATGATGCAGAATGGGTACAAACCCGATATGATC
261 CATCACTCCGGGTTTTTTAGGAAGTTAATTGGATGATGCAGAATGGGTACAAACCCGATATGATC
962656 ATTGAACCTAATAGAAGAAAAGAGGTTGAAGGCTATTCACCATGGAGGTAG
326 ATTGAACCT-ATAGAAGAAAAGAGGTTGAAGGCTATTCACCATGGAGGTAG
962707 TTGATGCTGCTTGTGAACAGTTTAACATAAATTATCACAACTCTACTGC-TATAAAAC-AATATG
1 TTGATGCTGCTTGTGAACAGTTTAACATAAATTATCACAACTCTACTGCTTATAAAACAAATATG
962770 AATGGAGCGG-AGAAGCAACAAACAAAAACATCAAGAAAATAGTGGAGAAAACGGCTGAGA-ATA
66 AATGGAGCGGTAGAAGCAACAAACAAAAACATCAAGAAAATAGTGGAGAAAACGGCTGAGACATA
962833 CAAGGATTGGCACGAG-AAATTACCTTTTACTTTG-TGCTTACCGAACTTCGATACAAACTTTGA
131 CAAGGATTGGCACGAGAAAATTACCTTTTACTTTGTTGCTTACCGAACTTCGATACAAACTTTGA
* *
962896 CTGTGG-TACCCCATTTTCCTTAGTATA-GGGATAGAGGCAGTATTTCCTATTGAGGTAGAGATC
196 CT-TGGCAACCCCATTTTCCTTAGCATATGGGATAGAGGCAGTATTTCCTATTGAGGTAGAGATC
962959 TCATCACTCCGGGTTTTTTAGG-AGTTAAATTGGATGATGCAGAATGGGTAC-AACCCGATATGA
260 TCATCACTCCGGGTTTTTTAGGAAGTT-AATTGGATGATGCAGAATGGGTACAAACCCGATATGA
963022 TCAATTGAACCTATAGAAGAAAAGAGGTTGAAGGCTATTCACCATGG
324 TC-ATTGAACCTATAGAAGAAAAGAGGTTGAAGGCTATTCACCATGG
963069 TCAACTCTAC
Statistics
Matches: 353, Mismatches: 6, Indels: 14
0.95 0.02 0.04
Matches are distributed among these distances:
368 53 0.15
369 91 0.26
370 49 0.14
371 21 0.06
372 18 0.05
373 49 0.14
374 15 0.04
375 8 0.02
376 49 0.14
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (375 bp):
TTGATGCTGCTTGTGAACAGTTTAACATAAATTATCACAACTCTACTGCTTATAAAACAAATATG
AATGGAGCGGTAGAAGCAACAAACAAAAACATCAAGAAAATAGTGGAGAAAACGGCTGAGACATA
CAAGGATTGGCACGAGAAAATTACCTTTTACTTTGTTGCTTACCGAACTTCGATACAAACTTTGA
CTTGGCAACCCCATTTTCCTTAGCATATGGGATAGAGGCAGTATTTCCTATTGAGGTAGAGATCT
CATCACTCCGGGTTTTTTAGGAAGTTAATTGGATGATGCAGAATGGGTACAAACCCGATATGATC
ATTGAACCTATAGAAGAAAAGAGGTTGAAGGCTATTCACCATGGAGGTAG
Found at i:965038 original size:23 final size:24
Alignment explanation
Indices: 965008--965067 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 24
964998 TAAATGTACT
*
965008 TTTTTGAAAATATATAGTATAT-G
1 TTTTTGAAAATATATAATATATAG
**
965031 TTTTTGAAAACGTATAATATATAG
1 TTTTTGAAAATATATAATATATAG
965055 TTTTTGAAAATAT
1 TTTTTGAAAATAT
965068 GTTTGGAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (24 bp):
TTTTTGAAAATATATAATATATAG
Found at i:965085 original size:37 final size:35
Alignment explanation
Indices: 965032--965322 Score: 284
Period size: 37 Copynumber: 7.9 Consensus size: 35
965022 TAGTATATGT
*
965032 TTTTGAAAACGTATAATATATAGTTTTTGAAAATA
1 TTTTGAAAACGTATAATATATAGTTTTTAAAAATA
**
965067 TGTTTGGAACTCGTATAATATATAGTTTTTAAAAATA
1 T-TTT-GAAAACGTATAATATATAGTTTTTAAAAATA
* * *
965104 TATTTGAACACGTATAATATAGT-TTTTTTAAAAAACA
1 T-TTTGAAAACGTATAATATA-TAGTTTTT-AAAAATA
965141 TATTTGAAAACGTATAATATATAG-TTTTAAAAATA
1 T-TTTGAAAACGTATAATATATAGTTTTTAAAAATA
* *
965176 TTTTTAAAACGTAAAATATATAGTTTTTTTAAAAATA
1 TTTTGAAAACGTATAATATATAG--TTTTTAAAAATA
* *
965213 TTTTTGAAAACGTATAATATATATTTTTTAAAAAAACATTTT
1 -TTTTGAAAACGTATAATATATAGTTTTT---AAAA-A--TA
* *
965255 TTTTGTAAACGTATAA-ATATAGTTTTTGAAAATA
1 TTTTGAAAACGTATAATATATAGTTTTTAAAAATA
*
965289 TTTTTGAAAACGTATAACATATA-TATTTTAAAAA
1 -TTTTGAAAACGTATAATATATAGT-TTTTAAAAA
965323 AAACGACTTT
Statistics
Matches: 216, Mismatches: 22, Indels: 35
0.79 0.08 0.13
Matches are distributed among these distances:
34 21 0.10
35 24 0.11
36 47 0.22
37 73 0.34
38 20 0.09
39 4 0.02
40 11 0.05
41 15 0.07
42 1 0.00
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (35 bp):
TTTTGAAAACGTATAATATATAGTTTTTAAAAATA
Found at i:965117 original size:73 final size:71
Alignment explanation
Indices: 965032--965322 Score: 302
Period size: 73 Copynumber: 4.0 Consensus size: 71
965022 TAGTATATGT
* * **
965032 TTTTGAAAACGTATAATATATAGTTTTTGAAAATATGTTTGGAACTCGTATAATATATAGTTTTT
1 TTTTGAAAACGTATAATATATAGTTTTTAAAAATAT-TTTTGAAAACGTATAATATATAGTTTTT
965097 AAAAATA
65 AAAAATA
* * * *
965104 TATTTGAACACGTATAATATAGT-TTTTTTAAAAAACATATTTGAAAACGTATAATATATAG-TT
1 T-TTTGAAAACGTATAATATA-TAGTTTTT-AAAAATATTTTTGAAAACGTATAATATATAGTTT
965167 TTAAAAATA
63 TTAAAAATA
* * *
965176 TTTTTAAAACGTAAAATATATAGTTTTTTTAAAAATATTTTTGAAAACGTATAATATATATTTTT
1 TTTTGAAAACGTATAATATATAG--TTTTTAAAAATATTTTTGAAAACGTATAATATATAGTTTT
*
965241 TAAAAAAACATTTT
64 T---AAAA-A--TA
* * *
965255 TTTTGTAAACGTATAA-ATATAGTTTTTGAAAATATTTTTGAAAACGTATAACATATA-TATTTT
1 TTTTGAAAACGTATAATATATAGTTTTTAAAAATATTTTTGAAAACGTATAATATATAGT-TTTT
965318 AAAAA
65 AAAAA
965323 AAACGACTTT
Statistics
Matches: 184, Mismatches: 21, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
70 1 0.01
71 16 0.09
72 42 0.23
73 55 0.30
74 7 0.04
75 1 0.01
76 41 0.22
77 1 0.01
78 6 0.03
79 14 0.08
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (71 bp):
TTTTGAAAACGTATAATATATAGTTTTTAAAAATATTTTTGAAAACGTATAATATATAGTTTTTA
AAAATA
Found at i:965356 original size:76 final size:76
Alignment explanation
Indices: 965201--965361 Score: 191
Period size: 76 Copynumber: 2.1 Consensus size: 76
965191 ATATATAGTT
* * * **** * *
965201 TTTTTAAAAATATTTTTGAAAACGTATAATATATATTTTTTAAAAAAACATTTTTTTTGTAAACG
1 TTTTTGAAAATATTTTTGAAAACGTATAACATATATATTTTAAAAAAACATCGACTTTGAAAACA
*
965266 TATAAATATAG
66 TATAAAAATAG
965277 TTTTTGAAAATATTTTTGAAAACGTATAACATATATATTTTAAAAAAA-A-CGACTTTGAAAACA
1 TTTTTGAAAATATTTTTGAAAACGTATAACATATATATTTTAAAAAAACATCGACTTTGAAAACA
*
965340 TATAAAAAAATG
66 TATAAAAATA-G
*
965352 GTTTTGAAAA
1 TTTTTGAAAA
965362 CGTAATATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
74 16 0.22
75 11 0.15
76 45 0.62
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (76 bp):
TTTTTGAAAATATTTTTGAAAACGTATAACATATATATTTTAAAAAAACATCGACTTTGAAAACA
TATAAAAATAG
Found at i:965432 original size:13 final size:12
Alignment explanation
Indices: 965414--965489 Score: 65
Period size: 13 Copynumber: 6.5 Consensus size: 12
965404 TTAAATATAG
*
965414 TATTATATTGTTT
1 TATTATATT-ATT
965427 TATTATATTATT
1 TATTATATTATT
965439 TATTATA-TA-T
1 TATTATATTATT
965449 TA-T-TATTATT
1 TATTATATTATT
965459 CATATTATATTTATT
1 --TATTATA-TTATT
965474 TATTAT-TTA-T
1 TATTATATTATT
965484 TATTAT
1 TATTAT
965490 TTTCTTCTGT
Statistics
Matches: 55, Mismatches: 1, Indels: 17
0.75 0.01 0.23
Matches are distributed among these distances:
8 2 0.04
9 3 0.05
10 11 0.20
11 5 0.09
12 11 0.20
13 16 0.29
14 2 0.04
15 5 0.09
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (12 bp):
TATTATATTATT
Found at i:965438 original size:3 final size:3
Alignment explanation
Indices: 965414--965490 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
965404 TTAAATATAG
*
965414 TAT TA- TAT TGT T-T TAT TA- TAT TATT TAT TAT ATAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT -TAT TAT TAT TAT
965458 TCA- TAT TA- TATT TATT TAT TATT TAT TAT TAT T
1 T-AT TAT TAT TA-T TA-T TAT TA-T TAT TAT TAT T
965491 TTCTTCTGTA
Statistics
Matches: 63, Mismatches: 1, Indels: 20
0.75 0.01 0.24
Matches are distributed among these distances:
2 9 0.14
3 38 0.60
4 16 0.25
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:965441 original size:22 final size:22
Alignment explanation
Indices: 965416--965492 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 22
965406 AAATATAGTA
*
965416 TTATATTGTTTTATTATATTA-
1 TTATATTATTTTATTATATTAT
*
965437 TT-TATTA-TATATTATTATTAT
1 TTATATTATTTTATTA-TATTAT
*
965458 TCATATTATATTTATT-TATTAT
1 TTATATTAT-TTTATTATATTAT
965480 TTATTATTATTTT
1 TTA-TATTATTTT
965493 CTTCTGTAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.13
20 9 0.20
21 3 0.07
22 16 0.36
23 6 0.13
24 5 0.11
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (22 bp):
TTATATTATTTTATTATATTAT
Found at i:966666 original size:14 final size:13
Alignment explanation
Indices: 966636--966670 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
966626 TCCTTTAAAA
*
966636 TTTTATTATTTCT
1 TTTTATTTTTTCT
966649 TTTTATTTTTTCCT
1 TTTTATTTTTT-CT
966663 TTTTATTT
1 TTTTATTT
966671 CTCTTTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTTTTCT
Found at i:969414 original size:37 final size:37
Alignment explanation
Indices: 969364--969437 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
969354 TTTTTTCAAA
* *
969364 TCAAGTTGAGTTTATGAAATTATGACTCGAAGTTAAT
1 TCAAGTCGAGTTTATGAAATTACGACTCGAAGTTAAT
969401 TCAAGTCGAGTTTATGAAATTACGACTCGAAGTTAAT
1 TCAAGTCGAGTTTATGAAATTACGACTCGAAGTTAAT
969438 GTAAATCGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (37 bp):
TCAAGTCGAGTTTATGAAATTACGACTCGAAGTTAAT
Found at i:969981 original size:2 final size:2
Alignment explanation
Indices: 969974--970010 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
969964 TAACGAAAAT
969974 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
970011 TATTAGCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:970636 original size:44 final size:45
Alignment explanation
Indices: 970572--970661 Score: 173
Period size: 44 Copynumber: 2.0 Consensus size: 45
970562 ATTATACTAA
970572 AATTTGAGATTGAATCTATTTAACAATATATATATATATATATAT
1 AATTTGAGATTGAATCTATTTAACAATATATATATATATATATAT
970617 AATTTGAGA-TGAATCTATTTAACAATATATATATATATATATAT
1 AATTTGAGATTGAATCTATTTAACAATATATATATATATATATAT
970661 A
1 A
970662 TATATTTATG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 36 0.80
45 9 0.20
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (45 bp):
AATTTGAGATTGAATCTATTTAACAATATATATATATATATATAT
Found at i:970648 original size:2 final size:2
Alignment explanation
Indices: 970641--970666 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
970631 CTATTTAACA
970641 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
970667 TTATGATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:971065 original size:2 final size:2
Alignment explanation
Indices: 971058--971104 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
971048 ACTCTGTTGG
971058 TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
971099 TA TA TA
1 TA TA TA
971105 AACGCACAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:971441 original size:14 final size:13
Alignment explanation
Indices: 971408--971446 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
971398 TTTAAGGTAA
*
971408 AACTATAAATAAT
1 AACTATAATTAAT
*
971421 AAATATAATTATAT
1 AACTATAATTA-AT
971435 AACTATAATTAA
1 AACTATAATTAA
971447 AATAATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (13 bp):
AACTATAATTAAT
Found at i:973875 original size:13 final size:14
Alignment explanation
Indices: 973859--973891 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
973849 CAATATTAGG
973859 ATATAATA-AAGTA
1 ATATAATACAAGTA
973872 ATATAATACAAGTA
1 ATATAATACAAGTA
*
973886 AAATAA
1 ATATAA
973892 ATATCTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (14 bp):
ATATAATACAAGTA
Found at i:975655 original size:105 final size:105
Alignment explanation
Indices: 975428--976029 Score: 692
Period size: 104 Copynumber: 5.8 Consensus size: 105
975418 AGTTGAGAAA
* * *
975428 GTTCTTCTCATTATG-ACTTCCTCCTTTAAGGTGAGTTATTCTCATTATGAACTCTTCTGGAAAT
1 GTTCTTCTCATTATGAACTTTCTCCTTTAAGATGAGTTCTTCTCATTATGAACTCTTCTGGAAAT
* * ** *
975492 GTTGGTTCACCCTCCTTATGCAGTGGATTTGAAAGGAACAA
66 GTTGTTTCA-CCTCCTTCTGGGGTGGATTTGAAAGGAACAT
* *
975533 GTTCTTCTCATTA-GAACTTTCCCCTTTAAGATGAGTTCTTCTCATTATGAACTCTTCTGAAAAT
1 GTTCTTCTCATTATGAACTTTCTCCTTTAAGATGAGTTCTTCTCATTATGAACTCTTCTGGAAAT
* **
975597 GTTGATTCACCTCCTTCTGGGGTTTATTTGAAAGGAACAT
66 GTTGTTTCACCTCCTTCTGGGGTGGATTTGAAAGGAACAT
* * *
975637 GTTCCTCTCATTATGAACTTTCTCCTTT-AGAAAGAG-TCTTCTTATTATGAACTCTTCTGGAAA
1 GTTCTTCTCATTATGAACTTTCTCCTTTAAG-ATGAGTTCTTCTCATTATGAACTCTTCTGGAAA
* *
975700 TGTTGTTTCATCT-CTTCTAGGGTGGATTTGAAAGGAAACAT
65 TGTTGTTTCACCTCCTTCTGGGGTGGATTTGAAAGG-AACAT
* * *
975741 GTTATTCTCATTATGAACTTTCTCTTTTAGGATGAGTTCTTCTCATTATGAAACTCTTCTGGAAA
1 GTTCTTCTCATTATGAACTTTCTCCTTTAAGATGAGTTCTTCTCATTATG-AACTCTTCTGGAAA
*
975806 TGTTGTTTCACCTACTTTCTGGGGTGGATTTGAAAGGAACA-
65 TGTTGTTTCACCT-CCTTCTGGGGTGGATTTGAAAGGAACAT
* * * * * * ** *
975847 GGTCTTCTCACTACGAACTTTCTCCTTTAGGACGAGTTCTTCTTATT-T--ACTCTTCTAAAAAC
1 GTTCTTCTCATTATGAACTTTCTCCTTTAAGATGAGTTCTTCTCATTATGAACTCTTCTGGAAAT
* *
975909 GTTGTTTCACCT-CTTATGGGGTGAATTTGAAAGGAACAT
66 GTTGTTTCACCTCCTTCTGGGGTGGATTTGAAAGGAACAT
* * * *
975948 GTTC-T-TCATTACGGACTTTCTCCTTTACA-ACGAGTTCTTC-CTATTAGGAACTCTTCTGGAA
1 GTTCTTCTCATTATGAACTTTCTCCTTTA-AGATGAGTTCTTCTC-ATTATGAACTCTTCTGGAA
* *
976009 ATGTTGGTTCACCTGCTTCTG
64 ATGTTGTTTCACCTCCTTCTG
976030 CAGTGGATCA
Statistics
Matches: 426, Mismatches: 55, Indels: 34
0.83 0.11 0.07
Matches are distributed among these distances:
99 34 0.08
100 24 0.06
101 3 0.01
102 45 0.11
103 24 0.06
104 110 0.26
105 96 0.23
106 66 0.15
107 4 0.01
108 20 0.05
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (105 bp):
GTTCTTCTCATTATGAACTTTCTCCTTTAAGATGAGTTCTTCTCATTATGAACTCTTCTGGAAAT
GTTGTTTCACCTCCTTCTGGGGTGGATTTGAAAGGAACAT
Found at i:976927 original size:10 final size:9
Alignment explanation
Indices: 976912--977001 Score: 67
Period size: 9 Copynumber: 9.4 Consensus size: 9
976902 TATTTTTCTC
976912 TTTTCTCTTT
1 TTTTCT-TTT
976922 TTTTCTTTT
1 TTTTCTTTT
976931 TTTTCATTTT
1 TTTTC-TTTT
*
976941 TCATTTC-ATT
1 T--TTTCTTTT
*
976951 TTTTCATTT
1 TTTTCTTTT
*
976960 TTATCTTTT
1 TTTTCTTTT
976969 ATCTTTCTTTCT
1 -T-TTTCTTT-T
*
976981 TTGTCTTTT
1 TTTTCTTTT
976990 TTTT-TTTT
1 TTTTCTTTT
976998 TTTT
1 TTTT
977002 GTTTCTCAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
8 12 0.18
9 21 0.32
10 21 0.32
11 7 0.11
12 5 0.08
ACGTcount: A:0.07, C:0.13, G:0.01, T:0.79
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:980815 original size:21 final size:21
Alignment explanation
Indices: 980790--980833 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
980780 CGAGTCTTTG
980790 TCTTTCATTTGCTCTCATTCA
1 TCTTTCATTTGCTCTCATTCA
980811 TCTTTCATTTGCTCTCATTCA
1 TCTTTCATTTGCTCTCATTCA
980832 TC
1 TC
980834 AATTGCTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.30, G:0.05, T:0.52
Consensus pattern (21 bp):
TCTTTCATTTGCTCTCATTCA
Found at i:988947 original size:15 final size:16
Alignment explanation
Indices: 988927--988957 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
988917 CAATATTAGG
988927 TATATAATA-AAGTAA
1 TATATAATACAAGTAA
988942 TATATAATACAAGTAA
1 TATATAATACAAGTAA
988958 AATAATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (16 bp):
TATATAATACAAGTAA
Found at i:994457 original size:42 final size:41
Alignment explanation
Indices: 994389--994542 Score: 134
Period size: 42 Copynumber: 3.7 Consensus size: 41
994379 CTTTTAAAAT
* **
994389 TTGCAGCGTTTGTTCAAAAACCGCCACTACATTATTACTCTG
1 TTGCAGCGTTTGTTGAAAAAATGCCACTACA-TATTACTCTG
* * * *
994431 TTGTAGCGTTTGTTGAAAAAATGCCACTATAGATTAAC-CATA
1 TTGCAGCGTTTGTTGAAAAAATGCCACTACATATT-ACTC-TG
* * *
994473 TTGCAACGTTTG-T-ATAAAAATGCCACTACAATACTACTTTG
1 TTGCAGCGTTTGTTGA-AAAAATGCCACTAC-ATATTACTCTG
* *
994514 CTGCGGCGTTTGTTGAAAAAATGCCACTA
1 TTGCAGCGTTTGTTGAAAAAATGCCACTA
994543 TAGATGAATC
Statistics
Matches: 88, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.01
41 30 0.34
42 56 0.64
43 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (41 bp):
TTGCAGCGTTTGTTGAAAAAATGCCACTACATATTACTCTG
Found at i:994736 original size:84 final size:83
Alignment explanation
Indices: 994438--994854 Score: 310
Period size: 83 Copynumber: 5.0 Consensus size: 83
994428 CTGTTGTAGC
* * * * * * *
994438 GTTTGTTGAAAAAATGCCACTATAGATTAACCATATTGCAACGTTTGTATAAAAATGCCACTACA
1 GTTTGTTGAAAAAATGCCACTATAGATGAACCCTATTACGACATTTGTATAAAAAAGCCGCTA-A
* * **
994503 A-TACTACTTTGCTGCGGC
65 AGTACTACTCTGTTGCGAT
* * * *
994521 GTTTGTTGAAAAAATGCCACTATAGATGAATCCTATTACGATGA-TTGTATAAAAATGCTGCTAA
1 GTTTGTTGAAAAAATGCCACTATAGATGAACCCTATTACGA-CATTTGTATAAAAAAGCCGCTAA
* **
994585 AGTACAACTCAATTGC-ATT
65 AGTACTACTCTGTTGCGA-T
* * * ** *
994604 GTTTGTTGAAAAAATGCAACTATATATGAATCCTATTACGGTATTTTTATAAAAAAGCCGCTAAA
1 GTTTGTTGAAAAAATGCCACTATAGATGAACCCTATTACGACATTTGTATAAAAAAGCCGCTAAA
994669 GTACTACTCTGTTGCGAT
66 GTACTACTCTGTTGCGAT
* * * * * * *
994687 GTTTGTTGGAAAAAAAGCCACTATAAAGGAACCCTATTGCGACATTTTTATACAAACA-CAGCTA
1 GTTTGTT-GAAAAAATGCCACTATAGATGAACCCTATTACGACATTTGTATA-AAAAAGCCGCTA
*
994751 AAGTACT-CGTTTGTCATG-G-T
64 AAGTACTAC-TCTGT--TGCGAT
* * *** * *
994771 GTTTGTTGAAAAAAACGCCACTATGGATGAA-CCTATTACGGTGTTTGAATAAAAAACCGCCGTT
1 GTTTGTTG-AAAAAATGCCACTATAGATGAACCCTATTACGACATTTGTATAAAAAA--GCCGCT
* *
994835 AAAGTACTACTATGTCGCGA
63 AAAGTACTACTCTGTTGCGA
994855 CATTTTGTAT
Statistics
Matches: 265, Mismatches: 52, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
82 7 0.03
83 155 0.58
84 80 0.30
85 20 0.08
86 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (83 bp):
GTTTGTTGAAAAAATGCCACTATAGATGAACCCTATTACGACATTTGTATAAAAAAGCCGCTAAA
GTACTACTCTGTTGCGAT
Found at i:996463 original size:18 final size:19
Alignment explanation
Indices: 996437--996473 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
996427 GGTAAAGTGC
*
996437 TACCTAAAATATT-ATTTT
1 TACCGAAAATATTAATTTT
996455 TACCGAAAATATTAATTTT
1 TACCGAAAATATTAATTTT
996474 GCTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.46
Consensus pattern (19 bp):
TACCGAAAATATTAATTTT
Found at i:999266 original size:81 final size:79
Alignment explanation
Indices: 999169--999415 Score: 289
Period size: 81 Copynumber: 3.1 Consensus size: 79
999159 CATTTACTCT
* * *
999169 TTTACCCAAAGGCATTTAACCTTTTATCTAACTAACATGATTGACATCTTTCTACCAATTGCACA
1 TTTAACCAAAGGCATTTAACCTTTCATCTAACTAACATGATTGACA-CTTTCTGCCAATTGCACA
999234 ACTAGGCATTTAACC
65 ACTAGGCATTTAACC
*
999249 TTTAACCTAAAGGCATTTAACCTTTCATCTAACTATCATGATT-AGCACATTTCTGCCAATTGCA
1 TTTAACC-AAAGGCATTTAACCTTTCATCTAACTAACATGATTGA-CAC-TTTCTGCCAATTGCA
* * *
999313 TAGCTAGGCATTTAATC
63 CAACTAGGCATTTAACC
* ** * * *
999330 TTTAACACAAAGGCATTTAACATTTCATCTAACTGGCATGATCGTCACCTTTTTGCCAATTGCAC
1 TTTAAC-CAAAGGCATTTAACCTTTCATCTAACTAACATGATTGACA-CTTTCTGCCAATTGCAC
* * *
999395 ATCTAGGAATTTAATC
64 AACTAGGCATTTAACC
999411 TTTAA
1 TTTAA
999416 TTTTAAAATA
Statistics
Matches: 145, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
80 8 0.06
81 135 0.93
82 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (79 bp):
TTTAACCAAAGGCATTTAACCTTTCATCTAACTAACATGATTGACACTTTCTGCCAATTGCACAA
CTAGGCATTTAACC
Found at i:1000015 original size:95 final size:95
Alignment explanation
Indices: 999816--1000015 Score: 285
Period size: 95 Copynumber: 2.1 Consensus size: 95
999806 TCCTACCATG
* * *
999816 GTATCGATACTTCTATACTATGGTACCGATACTCCCTTTCGGTATCGATGCCATTTTGGCATTCT
1 GTATCGATACTTCTATACTATGGTACCGATACTCCCTTTCAGTATCGATACCATTTTGACATTCT
* **
999881 GGAATCCCTGGTATCGATACCTTTCTCCTA
66 AGAATCCAAGGTATCGATACCTTTCTCCTA
* *
999911 GTA-CTGATACTTCTATACTATGGTACCGATACTCCCTTTTAGTATCGATACCATTTTTACATTC
1 GTATC-GATACTTCTATACTATGGTACCGATACTCCCTTTCAGTATCGATACCATTTTGACATTC
* * *
999975 TAGATTCCAAGGTATCGATATCTTTCTCTTA
65 TAGAATCCAAGGTATCGATACCTTTCTCCTA
1000006 GTATCGATAC
1 GTATCGATAC
1000016 CGCACATCAG
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 1 0.01
95 90 0.98
96 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (95 bp):
GTATCGATACTTCTATACTATGGTACCGATACTCCCTTTCAGTATCGATACCATTTTGACATTCT
AGAATCCAAGGTATCGATACCTTTCTCCTA
Found at i:1006206 original size:81 final size:81
Alignment explanation
Indices: 1006112--1006361 Score: 349
Period size: 81 Copynumber: 3.1 Consensus size: 81
1006102 AAGCATTTAG
* * * * * *
1006112 TCTTTTACCCAAAGGCATTTAACCTTTCATCAAACTGGCATGATTAACACATTTCTTCCAATTGT
1 TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACATTTCTACCAATTGC
*
1006177 ACAACTAGGCATATAA
66 ACAACTAGACATATAA
*
1006193 TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGGCACCA-TTCTACCAATTG
1 TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACA-CATTTCTACCAATTG
* *
1006257 CACAGCTAGACATTTAA
65 CACAACTAGACATATAA
* *
1006274 TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACATTTCTGCCAATTAC
1 TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACATTTCTACCAATTGC
* * *
1006339 ACAACTATATATTTAA
66 ACAACTAGACATATAA
1006355 TCTTTAA
1 TCTTTAA
1006362 TTTTAAAATA
Statistics
Matches: 151, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
80 2 0.01
81 147 0.97
82 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.34
Consensus pattern (81 bp):
TCTTTAACTCAAAGGCATTTAACCTTTCATCTAACTGGCATGATTGACACATTTCTACCAATTGC
ACAACTAGACATATAA
Found at i:1006937 original size:95 final size:95
Alignment explanation
Indices: 1006768--1006954 Score: 232
Period size: 95 Copynumber: 2.0 Consensus size: 95
1006758 CATGGTATCG
* ** *
1006768 ATACTTCTATACTATGGTACCGATACTCCCTTTCAATATCGGTACCATTTCGACCTTCTAGAATC
1 ATACTTCTATACTATGGTACCAATACTCCCTTTCAATATCAATACCATTTCGACATTCTAGAATC
**
1006833 CATTTTATCAATACCTTTCTCCTAGTACCA
66 CATGGTATCAATACCTTTCTCCTAGTACCA
* * * * * * *
1006863 ATACTTTTATACTATGTTACCAATACTTCCTTTCAGTATCAATACCATTTCTACATTCTGGATTC
1 ATACTTCTATACTATGGTACCAATACTCCCTTTCAATATCAATACCATTTCGACATTCTAGAATC
*
1006928 CGA-GGTATCAATACCTTTCTCTTAGTA
66 C-ATGGTATCAATACCTTTCTCCTAGTA
1006955 TCGATACCGC
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 76 0.99
96 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.39
Consensus pattern (95 bp):
ATACTTCTATACTATGGTACCAATACTCCCTTTCAATATCAATACCATTTCGACATTCTAGAATC
CATGGTATCAATACCTTTCTCCTAGTACCA
Found at i:1008125 original size:22 final size:22
Alignment explanation
Indices: 1008099--1008145 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
1008089 ATTGTTTTTA
* * *
1008099 TTATTCTTATTCTTATTCTTAT
1 TTATTATTATTATTATTATTAT
1008121 TTATTATTATTATTATTATTAT
1 TTATTATTATTATTATTATTAT
1008143 TTA
1 TTA
1008146 AAATAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (22 bp):
TTATTATTATTATTATTATTAT
Found at i:1008129 original size:3 final size:3
Alignment explanation
Indices: 1008096--1008143 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
1008086 TTAATTGTTT
* * *
1008096 TTA TTA TTC TTA TTC TTA TTC TTA TTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
1008142 TT
1 TT
1008144 TAAAATAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1008199 original size:23 final size:23
Alignment explanation
Indices: 1008172--1008254 Score: 89
Period size: 23 Copynumber: 3.6 Consensus size: 23
1008162 CCATTTACAG
1008172 AACCCGA-CCCAAACCAAACACA
1 AACCCGAGCCCAAACCAAACACA
**
1008194 TAACCC-AGGCCCAAACCAAACTTA
1 -AACCCGA-GCCCAAACCAAACACA
* * *
1008218 AACCGGAGTCCAAACCAAACCCA
1 AACCCGAGCCCAAACCAAACACA
1008241 AACCCGAGCCCAAA
1 AACCCGAGCCCAAA
1008255 TTAAAACCTA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
22 1 0.02
23 34 0.69
24 14 0.29
ACGTcount: A:0.45, C:0.41, G:0.10, T:0.05
Consensus pattern (23 bp):
AACCCGAGCCCAAACCAAACACA
Found at i:1025435 original size:141 final size:140
Alignment explanation
Indices: 1025180--1025439 Score: 362
Period size: 141 Copynumber: 1.9 Consensus size: 140
1025170 ATAAAGAGAT
*
1025180 GGATCAATATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCGATAAGAGAGAAAAAGTTCA
1 GGATCAATATTTCCAATGGAAAGTTCATAATGAGAAGAACTCATCGATAAGAGAGAAAAAGTTCA
* * * * *
1025245 TAATGAGAAGAATTTGTTCAAACCTTAGTTGCATTCATCACATATGGAGTTGAATCAGTAAACAC
66 TAATGAGAAGAACTTGTTCAAACCTCAGTCGCATTCATAACATAAGGAGTTGAATCAGTAAACAC
1025310 CTCATTTGAG
131 CTCATTTGAG
* * * * *
1025320 GGATCAATATTTCCAGTGGAAAGTTCATAATGAGAATAACTCATCCGATGAGGGAGAAGAAGTTC
1 GGATCAATATTTCCAATGGAAAGTTCATAATGAGAAGAACTCAT-CGATAAGAGAGAAAAAGTTC
* *
1025385 ATAATGAGAAGAACTTGTTC-AATCTCAGCTCG-TTTCCATAACATAAGGAGTTGAA
65 ATAATGAGAAGAACTTGTTCAAACCTCAG-TCGCATT-CATAACATAAGGAGTTGAA
1025440 ACAACACCGA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
140 49 0.47
141 55 0.53
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (140 bp):
GGATCAATATTTCCAATGGAAAGTTCATAATGAGAAGAACTCATCGATAAGAGAGAAAAAGTTCA
TAATGAGAAGAACTTGTTCAAACCTCAGTCGCATTCATAACATAAGGAGTTGAATCAGTAAACAC
CTCATTTGAG
Found at i:1025797 original size:23 final size:23
Alignment explanation
Indices: 1025752--1025821 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
1025742 AGAACCCGAC
*
1025752 CCAAACCCAAAACCTAGGCCCAAA
1 CCAAACCC-AAACCCAGGCCCAAA
* *
1025776 GCAAACCCAAACCCAGGTCCAAA
1 CCAAACCCAAACCCAGGCCCAAA
* *
1025799 CCAAACCCAAACCTAAGCCCAAA
1 CCAAACCCAAACCCAGGCCCAAA
1025822 TTAAAACTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 32 0.82
24 7 0.18
ACGTcount: A:0.46, C:0.41, G:0.09, T:0.04
Consensus pattern (23 bp):
CCAAACCCAAACCCAGGCCCAAA
Found at i:1033958 original size:90 final size:89
Alignment explanation
Indices: 1033803--1033979 Score: 291
Period size: 90 Copynumber: 2.0 Consensus size: 89
1033793 CCTAACACAC
* * *
1033803 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTACTTAAATCTATA
1 CCTTTTAGAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
* *
1033868 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTAAATAAT
*
1033892 CCTTTTAGATCCAAGTTACCCTAATCATATTAGAGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTAGAGCCAAGTTACCCTAATCATATTAG-GATTTTATTATTTCAAATTAATTAAATCTAT
1033957 ATTTAATTAATTGAAATTAAATA
65 ATTTAATTAATTGAAATTAAATA
1033980 TTCGGTATTA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 31 0.38
90 50 0.62
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (89 bp):
CCTTTTAGAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAAATAAT
Found at i:1037640 original size:46 final size:46
Alignment explanation
Indices: 1037573--1037665 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
1037563 ATAAGTTTGA
*
1037573 TTCGAGTTATTTGTTTTTGATCTCTTAGTATTTATGTTATAAATGG
1 TTCGAGTCATTTGTTTTTGATCTCTTAGTATTTATGTTATAAATGG
1037619 TTCGAGTCATTTGTTTTTGATCTCTTAGTATTTATGTTATAAATGG
1 TTCGAGTCATTTGTTTTTGATCTCTTAGTATTTATGTTATAAATGG
1037665 T
1 T
1037666 GTTATCTTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.54
Consensus pattern (46 bp):
TTCGAGTCATTTGTTTTTGATCTCTTAGTATTTATGTTATAAATGG
Found at i:1037656 original size:23 final size:23
Alignment explanation
Indices: 1037584--1037656 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
1037574 TCGAGTTATT
1037584 TGTTTTTGATCTCTTAGTATTTA
1 TGTTTTTGATCTCTTAGTATTTA
* * *
1037607 TGTTATAAATGGT-TC-GAGTCA-TT-
1 TGTT-T--TTGATCTCTTAGT-ATTTA
1037630 TGTTTTTGATCTCTTAGTATTTA
1 TGTTTTTGATCTCTTAGTATTTA
1037653 TGTT
1 TGTT
1037657 ATAAATGGTG
Statistics
Matches: 36, Mismatches: 6, Indels: 16
0.62 0.10 0.28
Matches are distributed among these distances:
20 3 0.08
21 3 0.08
22 6 0.17
23 12 0.33
24 6 0.17
25 3 0.08
26 3 0.08
ACGTcount: A:0.19, C:0.08, G:0.16, T:0.56
Consensus pattern (23 bp):
TGTTTTTGATCTCTTAGTATTTA
Found at i:1038766 original size:15 final size:15
Alignment explanation
Indices: 1038746--1038780 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
1038736 ATTAGCTGCC
1038746 GGTTCATCAGGAACA
1 GGTTCATCAGGAACA
1038761 GGTTCATCAGGAACA
1 GGTTCATCAGGAACA
1038776 GGTTC
1 GGTTC
1038781 CTCAATGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (15 bp):
GGTTCATCAGGAACA
Found at i:1038977 original size:23 final size:22
Alignment explanation
Indices: 1038925--1038977 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
1038915 ACAACAATGG
1038925 ATATTAAAGTAAGAAATTTACC
1 ATATTAAAGTAAGAAATTTACC
*
1038947 ATACTAAAGTAAGAAAATTTACC
1 ATATTAAAGTAAG-AAATTTACC
1038970 GA-ATTAAA
1 -ATATTAAA
1038978 ATTTATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 12 0.44
23 14 0.52
24 1 0.04
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (22 bp):
ATATTAAAGTAAGAAATTTACC
Found at i:1040742 original size:20 final size:21
Alignment explanation
Indices: 1040717--1040786 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 21
1040707 GATTATTTCA
1040717 AATTAATT-AAATATATATTT
1 AATTAATTAAAATATATATTT
* * *
1040737 AATTAATTGAAATTAAATATTC
1 AATTAATT-AAAATATATATTT
*
1040759 AGGATT-ATTAAAACATATATTT
1 A--ATTAATTAAAATATATATTT
1040781 AATTAA
1 AATTAA
1040787 CTCTAGATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
20 11 0.29
21 1 0.03
22 20 0.53
23 3 0.08
24 3 0.08
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (21 bp):
AATTAATTAAAATATATATTT
Found at i:1042711 original size:16 final size:17
Alignment explanation
Indices: 1042686--1042721 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
1042676 TAAAAATACA
*
1042686 AAAAATTGAAATCAATT
1 AAAAATTGAAATAAATT
1042703 AAAAA-TGAAATAAATT
1 AAAAATTGAAATAAATT
1042719 AAA
1 AAA
1042722 TATGGTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (17 bp):
AAAAATTGAAATAAATT
Found at i:1067405 original size:30 final size:31
Alignment explanation
Indices: 1067369--1067427 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
1067359 TAAAGTTTGG
1067369 AAAAGTTCA-AGGACCAAAAG-GATAATTTTC
1 AAAAGTTCAGAGGACCAAAAGTGA-AATTTTC
* *
1067399 AAAAGTTTAGGGGACCAAAAGTGAAATTT
1 AAAAGTTCAGAGGACCAAAAGTGAAATTT
1067428 AAAAATTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 15 0.60
32 2 0.08
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (31 bp):
AAAAGTTCAGAGGACCAAAAGTGAAATTTTC
Found at i:1067443 original size:29 final size:31
Alignment explanation
Indices: 1067379--1067443 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
1067369 AAAAGTTCAA
*
1067379 GGACCAAAAGGATAATTTTCAAAAGTTTAGG
1 GGACCAAAAGGATAATTTTCAAAAATTTAGG
1067410 GGACCAAAAGTGA-AA-TTT-AAAAATTTAGG
1 GGACCAAAAG-GATAATTTTCAAAAATTTAGG
*
1067439 TGACC
1 GGACC
1067444 CCATAAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 14 0.45
30 3 0.10
31 12 0.39
32 2 0.06
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.25
Consensus pattern (31 bp):
GGACCAAAAGGATAATTTTCAAAAATTTAGG
Found at i:1072381 original size:13 final size:14
Alignment explanation
Indices: 1072363--1072392 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1072353 AGTTGGACAA
1072363 TCTTCATATGCA-G
1 TCTTCATATGCACG
1072376 TCTTCATATGCACG
1 TCTTCATATGCACG
1072390 TCT
1 TCT
1072393 GTAATGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (14 bp):
TCTTCATATGCACG
Found at i:1082943 original size:21 final size:21
Alignment explanation
Indices: 1082883--1082943 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
1082873 AAAATATTTT
* *
1082883 AAATTCAAATTATTAAAAATTAA
1 AAATT-AAATTACT-AAAACTAA
* * * *
1082906 ATATAAAAATACCAAAACTAA
1 AAATTAAATTACTAAAACTAA
1082927 AAATTAAATTACTAAAA
1 AAATTAAATTACTAAAA
1082944 TATATATATA
Statistics
Matches: 28, Mismatches: 10, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
21 20 0.71
22 5 0.18
23 3 0.11
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (21 bp):
AAATTAAATTACTAAAACTAA
Found at i:1082950 original size:2 final size:2
Alignment explanation
Indices: 1082943--1082971 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
1082933 AATTACTAAA
1082943 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1082972 TTTGTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1083335 original size:26 final size:23
Alignment explanation
Indices: 1083306--1083352 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
1083296 AATTATATAG
1083306 TTTCATGATAATTTATAAAAAAATAA
1 TTTCAT-A-AATTTA-AAAAAAATAA
*
1083332 TTTCATAATTTTAAAAAAAAT
1 TTTCATAAATTTAAAAAAAAT
1083353 TAAAAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 1 0.05
26 6 0.30
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
TTTCATAAATTTAAAAAAAATAA
Found at i:1083639 original size:24 final size:22
Alignment explanation
Indices: 1083612--1083665 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 22
1083602 GGTATTATTC
*
1083612 TATTTAAGTTTATGAATATTTTTA
1 TATTTAA-TTTA-AAATATTTTTA
1083636 TATTATGAATTTAAAATATTTTTA
1 TATT-T-AATTTAAAATATTTTTA
1083660 T-TTTAA
1 TATTTAA
1083666 AAAATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 2 0.07
22 1 0.04
23 2 0.07
24 15 0.56
25 5 0.19
26 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (22 bp):
TATTTAATTTAAAATATTTTTA
Found at i:1085444 original size:25 final size:24
Alignment explanation
Indices: 1085415--1085471 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 24
1085405 ACTAATGATA
1085415 ATATTAGTTATTTAAATAATATTTT
1 ATATTA-TTATTTAAATAATATTTT
1085440 ATATTA-TATTTAAA-AA-A-TTT
1 ATATTATTATTTAAATAATATTTT
1085460 ATATTA-TATTTA
1 ATATTATTATTTA
1085472 TTTAAATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 15 0.47
21 1 0.03
22 2 0.06
23 8 0.25
25 6 0.19
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATATTATTATTTAAATAATATTTT
Found at i:1085462 original size:20 final size:23
Alignment explanation
Indices: 1085423--1085471 Score: 77
Period size: 20 Copynumber: 2.3 Consensus size: 23
1085413 TAATATTAGT
1085423 TATTTAAATAATATTTTATATTA
1 TATTTAAATAATATTTTATATTA
1085446 TATTTAAA-AA-A-TTTATATTA
1 TATTTAAATAATATTTTATATTA
1085466 TATTTA
1 TATTTA
1085472 TTTAAATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.58
21 1 0.04
22 2 0.08
23 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTTAAATAATATTTTATATTA
Found at i:1085487 original size:22 final size:22
Alignment explanation
Indices: 1085422--1085488 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 22
1085412 ATAATATTAG
*
1085422 TTATTTAAATAATATTTTATAT
1 TTATTTAAATAATATATTATAT
*
1085444 TATATTTAAAAAATTTATATTATAT
1 T-TATTTAAATAA--TATATTATAT
*
1085469 TTATTTAAATCATATATTAT
1 TTATTTAAATAATATATTAT
1085489 TTACTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 9 0.24
23 10 0.26
24 9 0.24
25 10 0.26
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATTTAAATAATATATTATAT
Found at i:1088087 original size:3 final size:3
Alignment explanation
Indices: 1088068--1088112 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
1088058 GCAAATGTAA
1088068 AAT AA- AAT AATT AAT AAT AAT AAT AAT AAT -AT AAT -AT ATAT AAT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
1088112 A
1 A
1088113 TTTATAACTC
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 6 0.16
3 25 0.68
4 6 0.16
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:1088491 original size:54 final size:54
Alignment explanation
Indices: 1088268--1090369 Score: 2655
Period size: 54 Copynumber: 39.2 Consensus size: 54
1088258 CATCTTCTTT
* * * *
1088268 GAACAATCTTC-GACC-AGCGGGTTCGCTCCCTCTTGCTTCA-GAAGTAAGAACTC
1 GAACAATCTTCTG-CCTA-CGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * *
1088321 AAACAATCTTCTGCTTACGGGTTCGCTCCTTCTTGCTTCAGGGAGT-GGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * * * * *
1088374 GAACAATCTTCTGCTTACAGGTTTGTTCCTTCTTGCTTCAAGGAGTA-GAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * *
1088427 GAATAATCTTCTACCTACGGATTCACTCCCTCTTTCTTTAGGGAGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* *
1088481 AAACAATCTTCTGCCTACGGGTTCGCTCCCACTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * *
1088535 GAACAATCTTCTGCCTACTGGTTCGCTCCATCTTTCTTTACGGAGTAGGAACTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1088589 GAGCAATCTTTTGCCTACGGGTTCGCTCCCTCTTCCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
*
1088643 GAACAATCTTCTACCTACGGGTTCGCT-CCTCTTTCTTTA-GGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1088695 GAACAATCTTATGTCTACGGGTTCGCTCCC-CTTTTCTTTAGGGAGTAGGAACTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTC-TTTCTTTAGGGAGTAGGAACTC
*
1088749 GAACAATCTGT-TGCCTACAGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCT-TCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1088803 GAACAATCTTCTGCCTACGGGTTTGCTTCCTCTTTCTTTAGGGAGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* *
1088857 GAACAATCTTCTGCCTACAGGTTCGCTCCCTCTTTCTTTAGGGAGTAAGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* *
1088911 GAACAATCTTCTACCTACGGGTTCGCTCCCTCGTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * **
1088965 GAACAATCTTCTACCTACGGGTTCACTCCCTCTTTCTTTAGGGAGTATAAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* ** * * *
1089019 GAACAATCTT-TGCCTATGATTTCGCTCCCTCTTTCTTGAGGGTGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089072 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGAGAGAAGGAACTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089126 GATCAATCTTCTGCCTACGGGTTCACTCCCACTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089180 GAACAATATTTTGCCTACGGGTTCACTCCCTCTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* ** * * *
1089234 AAACAATCTTCTATCTACGGGTTTGTTCCCTCTTTGTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * *
1089288 GAACAATCTTCTGCCTACAGGTTTGCTCCCTCTTTCTTTAGGGAGTATGAAATC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* **
1089342 GAACAATCTTCTGCCTAC-TGTTCGCTTTCTCTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * *
1089395 AAACAATCTTCTGCCTACGGGTTTGCTCCATCTTTTTTTAGGAAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* ** * *
1089449 GAACAATCTTTTGCCTATAGGTTCGCTCCTTCTTTCTTTAGAGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * * *
1089503 GAACAATCTTTTACCTACGGGTTCACTCCCTCTTTTTTTAGAGTGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* *
1089557 GAACAATCTTCTGCCTACGGGTTCGCTCCATCTTTCTTTAGGGAGTAGGAACAC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089611 GAACAATCTTCTACCTACGGGTTTGCTCCCACTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089665 GAATAATCTTTTGCCTACGGGTTCACTCCCTCTTTCTTTAGGGAGTA-GAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * * * **
1089718 GAATAATCTTTTACTTGC-GGTTCGCTCCCTCTTTATTTAGATAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1089771 GAACAATCTTATGTCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACAC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * ** *
1089825 GAACAATCTTCTTCCGACATGTTCGCTCCCTCTTTCTTTAGGGAGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * * *
1089879 GAACAATATTCTACCTATGGGTTCGCTCCCTCTTGCTTCAGGGGGTA-GAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
** * *
1089932 GAACAATCTTCTGCCTGTGGATTTGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * *
1089986 GAACAATCTTCTGCCTACCGGTTCACTCCCTCTTTCTTGAGGGAGTAAGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1090040 AAACAATCTTCTGCCTACAGGTTCGCTCCCTCTTTATTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1090094 GAACAATCTTCTGCCTATGGGTTCGCTCCCTCTTTCTTTAAGGAGTA-GAACTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * *
1090147 GAACAATCTGCTTCCTACGGGTTCACTCCCTCTTTTTTTAGGGAGTAGGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* *
1090201 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGAGAGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * *
1090255 GAACAATCTTCTACCTACGGGTTCGCT-CC-C--TC-TTAGAGAGTATGAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
* * * * *
1090304 GAACAATCTTCTACCTACGGATTCGCTCCCTCTTACTTCAAAGG-GTA-GAACTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTT-TAGGGAGTAGGAACTC
*
1090357 GAAAAATCTTCTG
1 GAACAATCTTCTG
1090370 GTGTGATTCT
Statistics
Matches: 1781, Mismatches: 245, Indels: 46
0.86 0.12 0.02
Matches are distributed among these distances:
49 43 0.02
50 4 0.00
51 1 0.00
52 63 0.04
53 384 0.22
54 1282 0.72
55 4 0.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (54 bp):
GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTC
Found at i:1089135 original size:269 final size:269
Alignment explanation
Indices: 1088268--1090369 Score: 2628
Period size: 269 Copynumber: 7.9 Consensus size: 269
1088258 CATCTTCTTT
* * * * *
1088268 GAACAATCTTC-GACC-AGCGGGTTCGCTCCCTCTTGCTTCA-GAAGTAAGAACTCAAACAATCT
1 GAACAATCTTCTG-CCTA-CGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCT
* * * * * * *
1088330 TCTGCTTACGGGTTCGCTCCTTCTTGCTTCAGGGAGT-GGAACTCGAACAATCTTCTGCTTACAG
64 TCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGG
* * * * * * * * *
1088394 GTTTGTTCCTTCTTGCTTCAAGGAGTA-GAACTCGAATAATCTTCTACCTACGGATTCACTCCCT
129 GTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCT
* * *
1088458 CTTTCTTTAGGGAGTATGAACTCAAACAATCTTCTGCCTACGGGTTCGCTCCCACTTTCTTTAGG
194 CTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGG
1088523 GAGTAGGAACTC
258 GAGTAGGAACTC
* * * * * *
1088535 GAACAATCTTCTGCCTACTGGTTCGCTCCATCTTTCTTTACGGAGTAGGAACTTGAGCAATCTTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
*
1088600 TGCCTACGGGTTCGCTCCCTCTTCCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* **
1088665 TCGCT-CCTCTTTCTTTA-GGAGTAGGAACTCGAACAATCTTATGTCTACGGGTTCGCTCCC-CT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTC-
* *
1088727 TTTCTTTAGGGAGTAGGAACTTGAACAATCTGT-TGCCTACAGGTTCGCTCCCTCTTTCTTTAGG
195 TTTCTTTAGGGAGTAGGAACTCGAACAATCT-TCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGG
1088791 GAGTAGGAACTC
258 GAGTAGGAACTC
* * *
1088803 GAACAATCTTCTGCCTACGGGTTTGCTTCCTCTTTCTTTAGGGAGTATGAACTCGAACAATCTTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
* *
1088868 TGCCTACAGGTTCGCTCCCTCTTTCTTTAGGGAGTAAGAACTCGAACAATCTTCTACCTACGGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* *
1088933 TCGCTCCCTCGTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCACTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
** ** * *
1088998 TTCTTTAGGGAGTATAAACTCGAACAATCTT-TGCCTATGATTTCGCTCCCTCTTTCTTGAGGGT
196 TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGGGA
*
1089062 GTATGAACTC
260 GTAGGAACTC
* * * *
1089072 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGAGAGAAGGAACTTGATCAATCTTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
* * * * *
1089137 TGCCTACGGGTTCACTCCCACTTTCTTTAGGGAGTAGGAACTCGAACAATATTTTGCCTACGGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* * * * *
1089202 TCACTCCCTCTTTCTTTAGGGAGTAGGAACTCAAACAATCTTCTATCTACGGGTTTGTTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
* * *
1089267 TTGTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTACAGGTTTGCTCCCTCTTTCTTTAGGGA
196 TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGGGA
* *
1089332 GTATGAAATC
260 GTAGGAACTC
* ** *
1089342 GAACAATCTTCTGCCTAC-TGTTCGCTTTCTCTTTCTTTAGGGAGTAGGAACTCAAACAATCTTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
* * * * * * **
1089406 TGCCTACGGGTTTGCTCCATCTTTTTTTAGGAAGTAGGAACTCGAACAATCTTTTGCCTATAGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* * * *
1089471 TCGCTCCTTCTTTCTTTAGAGAGTAGGAACTCGAACAATCTTTTACCTACGGGTTCACTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
* * * *
1089536 TTTTTTAGAGTGTAGGAACTCGAACAATCTTCTGCCTACGGGTTCGCTCCATCTTTCTTTAGGGA
196 TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGGGA
*
1089601 GTAGGAACAC
260 GTAGGAACTC
* * * * *
1089611 GAACAATCTTCTACCTACGGGTTTGCTCCCACTTTCTTTAGGGAGTAGGAACTCGAATAATCTTT
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
* * * * *
1089676 TGCCTACGGGTTCACTCCCTCTTTCTTTAGGGAGTA-GAACTCGAATAATCTTTTACTTGC-GGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* ** * **
1089739 TCGCTCCCTCTTTATTTAGATAGTAGGAACTCGAACAATCTTATGTCTACGGGTTCGCTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
* * * **
1089804 TTCTTTAGGGAGTAGGAACACGAACAATCTTCTTCCGACATGTTCGCTCCCTCTTTCTTTAGGGA
196 TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGGGA
*
1089869 GTATGAACTC
260 GTAGGAACTC
* * * * * *
1089879 GAACAATATTCTACCTATGGGTTCGCTCCCTCTTGCTTCAGGGGGTA-GAACTCGAACAATCTTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
** * * * *
1089943 TGCCTGTGGATTTGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTACCGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* * * * * *
1090008 TCACTCCCTCTTTCTTGAGGGAGTAAGAACTCAAACAATCTTCTGCCTACAGGTTCGCTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
* *
1090073 TTATTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTATGGGTTCGCTCCCTCTTTCTTTAAGGA
196 TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTA-GGGTTCGCTCCCTCTTTCTTTAGGGA
*
1090138 GTA-GAACTT
260 GTAGGAACTC
* * * *
1090147 GAACAATCTGCTTCCTACGGGTTCACTCCCTCTTTTTTTAGGGAGTAGGAACTCGAACAATCTTC
1 GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
* *
1090212 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGAGAGTATGAACTCGAACAATCTTCTACCTACGGGT
66 TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
* * *
1090277 TCGCT-CC-C--TC-TTAGAGAGTATGAACTCGAACAATCTTCTACCTACGGATTCGCTCCCTCT
131 TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
* * * *
1090337 TACTTCAAAGG-GTA-GAACTCGAAAAATCTTCTG
196 TTCTT-TAGGGAGTAGGAACTCGAACAATCTTCTG
1090370 GTGTGATTCT
Statistics
Matches: 1587, Mismatches: 232, Indels: 36
0.86 0.13 0.02
Matches are distributed among these distances:
263 18 0.01
264 49 0.03
265 5 0.00
267 86 0.05
268 511 0.32
269 728 0.46
270 189 0.12
271 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (269 bp):
GAACAATCTTCTGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTC
TGCCTACGGGTTCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGT
TCGCTCCCTCTTTCTTTAGGGAGTAGGAACTCGAACAATCTTCTACCTACGGGTTCGCTCCCTCT
TTCTTTAGGGAGTAGGAACTCGAACAATCTTCTGCCTAGGGTTCGCTCCCTCTTTCTTTAGGGAG
TAGGAACTC
Found at i:1090789 original size:42 final size:42
Alignment explanation
Indices: 1090742--1090822 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
1090732 AAATTACCCA
*
1090742 AAGGATTTAATCATCAAGCTCGAAAGACTTACTGATGGCCCG
1 AAGGATTTAATCATCAAGCTCGAAAGACATACTGATGGCCCG
* * *
1090784 AAGGATTTCATCATCATGCTCGAAAGACATGCTGATGGC
1 AAGGATTTAATCATCAAGCTCGAAAGACATACTGATGGC
1090823 ACTTACTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
AAGGATTTAATCATCAAGCTCGAAAGACATACTGATGGCCCG
Found at i:1090886 original size:37 final size:37
Alignment explanation
Indices: 1090830--1090948 Score: 193
Period size: 37 Copynumber: 3.2 Consensus size: 37
1090820 GGCACTTACT
*
1090830 GATGGATTTACTTCACTACTCTTCCGTGAAGGCTTAA
1 GATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAA
* * * *
1090867 GATAGATTTGTTTCTCTACTCTTCGGTGAAGGCTTAA
1 GATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAA
1090904 GATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAA
1 GATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAA
1090941 GATGGATT
1 GATGGATT
1090949 CACTTCTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (37 bp):
GATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAA
Found at i:1092223 original size:7 final size:7
Alignment explanation
Indices: 1092202--1092327 Score: 173
Period size: 7 Copynumber: 17.9 Consensus size: 7
1092192 TAAGATCTGC
*
1092202 TTTTTAT
1 TTTTTCT
*
1092209 TTTCTCT
1 TTTTTCT
1092216 TTTTTCT
1 TTTTTCT
1092223 TTTTTCT
1 TTTTTCT
1092230 TTTTTCT
1 TTTTTCT
1092237 TTTTTCT
1 TTTTTCT
1092244 TTCTCTT-T
1 TT-T-TTCT
*
1092252 TTTTTTT
1 TTTTTCT
1092259 TTTTTCT
1 TTTTTCT
*
1092266 TTTTTTT
1 TTTTTCT
1092273 TTTTTCT
1 TTTTTCT
1092280 TTTTTCT
1 TTTTTCT
1092287 TTTTTCT
1 TTTTTCT
1092294 TTTTTCT
1 TTTTTCT
1092301 TTTTTCT
1 TTTTTCT
*
1092308 TTTTTTT
1 TTTTTCT
*
1092315 TTTTTTT
1 TTTTTCT
1092322 TTTTTC
1 TTTTTC
1092328 AAGCAAAATA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
6 2 0.02
7 100 0.93
8 4 0.04
9 2 0.02
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTCT
Found at i:1092344 original size:1 final size:1
Alignment explanation
Indices: 1092215--1092326 Score: 116
Period size: 1 Copynumber: 112.0 Consensus size: 1
1092205 TTATTTTCTC
* * * * * * * *
1092215 TTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTCTCTTTTTTTTTTTTTTTCTTTTTTTTTTTTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
1092280 TTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1092327 CAAGCAAAAT
Statistics
Matches: 87, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:1092383 original size:1 final size:1
Alignment explanation
Indices: 1092377--1092558 Score: 184
Period size: 1 Copynumber: 182.0 Consensus size: 1
1092367 TAGGTCCTTC
* *
1092377 TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** * *** *** ** ***** *
1092442 TTTTTTTTGCCTTCTTACATAGGTCCTTCCCAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1092507 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1092559 AGGAACGAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 158 1.00
ACGTcount: A:0.03, C:0.07, G:0.02, T:0.89
Consensus pattern (1 bp):
T
Found at i:1095369 original size:19 final size:19
Alignment explanation
Indices: 1095345--1095390 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
1095335 GAGTTCAAGG
1095345 TAATGCCCTTTGGGCTTAC
1 TAATGCCCTTTGGGCTTAC
1095364 TAATGCCCTTTGGGCTTAC
1 TAATGCCCTTTGGGCTTAC
1095383 TAATGCCC
1 TAATGCCC
1095391 CTGCTACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (19 bp):
TAATGCCCTTTGGGCTTAC
Found at i:1103944 original size:18 final size:18
Alignment explanation
Indices: 1103907--1103945 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1103897 TGTTGTTGTC
**
1103907 ATTTTAAATAAAAATGAA
1 ATTTTAAATAAAAAACAA
*
1103925 ATTTTAATTAAAAAACAA
1 ATTTTAAATAAAAAACAA
1103943 ATT
1 ATT
1103946 GAGGTCTACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (18 bp):
ATTTTAAATAAAAAACAA
Found at i:1106114 original size:3 final size:3
Alignment explanation
Indices: 1106100--1106135 Score: 54
Period size: 3 Copynumber: 11.3 Consensus size: 3
1106090 TGTAAAATAC
1106100 AAT AATT AAT AAT AATT AAT AAT AAT AAT AAT AAT A
1 AAT AA-T AAT AAT AA-T AAT AAT AAT AAT AAT AAT A
1106136 TACTATTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 25 0.81
4 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:1106115 original size:10 final size:10
Alignment explanation
Indices: 1106100--1106134 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
1106090 TGTAAAATAC
1106100 AATAATTAAT
1 AATAATTAAT
1106110 AATAATTAAT
1 AATAATTAAT
1106120 AATAA-TAAT
1 AATAATTAAT
1106129 AATAAT
1 AATAAT
1106135 ATACTATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AATAATTAAT
Found at i:1106279 original size:14 final size:15
Alignment explanation
Indices: 1106260--1106292 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1106250 CTTATATTAG
1106260 ATTTATTT-AATAAT
1 ATTTATTTAAATAAT
1106274 ATTTATTTAAATAAT
1 ATTTATTTAAATAAT
1106289 ATTT
1 ATTT
1106293 TATATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTATTTAAATAAT
Found at i:1106288 original size:18 final size:17
Alignment explanation
Indices: 1106263--1106301 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
1106253 ATATTAGATT
*
1106263 TATTTAATAATA-TTTA
1 TATTAAATAATATTTTA
1106279 T-TTAAATAATATTTTA
1 TATTAAATAATATTTTA
1106295 TATTAAA
1 TATTAAA
1106302 AGTATTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 6 0.30
17 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:1106308 original size:16 final size:16
Alignment explanation
Indices: 1106261--1106301 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
1106251 TTATATTAGA
1106261 TTTATTT-AATAATA-
1 TTTATTTAAATAATAT
1106275 TTTATTTAAATAATAT
1 TTTATTTAAATAATAT
1106291 TTTATATTAAA
1 TTTAT-TTAAA
1106302 AGTATTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.29
15 7 0.29
16 5 0.21
17 5 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATTTAAATAATAT
Found at i:1106644 original size:15 final size:16
Alignment explanation
Indices: 1106621--1106654 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
1106611 TCACCACCTG
*
1106621 ATTTGATAAAA-AAAT
1 ATTTAATAAAATAAAT
1106636 ATTTAATAAAATAAAT
1 ATTTAATAAAATAAAT
1106652 ATT
1 ATT
1106655 CTCCAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTTAATAAAATAAAT
Found at i:1108924 original size:11 final size:11
Alignment explanation
Indices: 1108908--1108933 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1108898 TTTTTCAAAC
1108908 AAAAAAAACAA
1 AAAAAAAACAA
1108919 AAAAAAAACAA
1 AAAAAAAACAA
1108930 AAAA
1 AAAA
1108934 GCCAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:1114602 original size:14 final size:15
Alignment explanation
Indices: 1114574--1114671 Score: 51
Period size: 14 Copynumber: 6.3 Consensus size: 15
1114564 AAAGGAGCGA
1114574 AAAAAAAGTAAAAAT
1 AAAAAAAGTAAAAAT
*
1114589 AAAAAAA-TATAAAT
1 AAAAAAAGTAAAAAT
1114603 AGAGATAAAAGTAAAAAAAT
1 A-A-A-AAAAGT--AAAAAT
* *
1114623 AAATCAAAGGAAAAA-
1 AAA-AAAAGTAAAAAT
*
1114638 AAATGAAAA-TGAAAAT
1 AAA--AAAAGTAAAAAT
*
1114654 GAAAAAA-TAAAAAT
1 AAAAAAAGTAAAAAT
1114668 AAAA
1 AAAA
1114672 TTTAATTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
14 20 0.31
15 15 0.23
16 11 0.17
17 4 0.06
18 7 0.11
19 1 0.02
20 6 0.09
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.14
Consensus pattern (15 bp):
AAAAAAAGTAAAAAT
Found at i:1114658 original size:20 final size:19
Alignment explanation
Indices: 1114635--1114672 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
1114625 ATCAAAGGAA
*
1114635 AAAAAATGAAAATGAAAATG
1 AAAAAATAAAAAT-AAAATG
1114655 AAAAAATAAAAATAAAAT
1 AAAAAATAAAAATAAAAT
1114673 TTAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (19 bp):
AAAAAATAAAAATAAAATG
Found at i:1115809 original size:22 final size:21
Alignment explanation
Indices: 1115777--1115833 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
1115767 GGACCTGTAA
1115777 AAAAAAGAAAATTAA-ATTAAAT
1 AAAAAAGAAAA-TAATATT-AAT
*
1115799 AAAAAATAAAATAATATTAAT
1 AAAAAAGAAAATAATATTAAT
* *
1115820 AAAATAGTAAATAA
1 AAAAAAGAAAATAA
1115834 AAATAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (21 bp):
AAAAAAGAAAATAATATTAAT
Found at i:1115845 original size:31 final size:30
Alignment explanation
Indices: 1115790--1115874 Score: 102
Period size: 31 Copynumber: 2.7 Consensus size: 30
1115780 AAAGAAAATT
1115790 AAAT-TAAATAAAAAATAAAATAATATTAATA
1 AAATATAAAT-AAAAAT-AAATAATATTAATA
1115821 AAATAGTAAATAAAAATAAATAATATTAATA
1 AAATA-TAAATAAAAATAAATAATATTAATA
*
1115852 TAATATATAATAATAAA-AAATAA
1 AAATATA-AATAA-AAATAAATAA
1115875 AATTTTAAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
30 2 0.04
31 33 0.67
32 9 0.18
33 5 0.10
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.29
Consensus pattern (30 bp):
AAATATAAATAAAAATAAATAATATTAATA
Found at i:1115856 original size:18 final size:17
Alignment explanation
Indices: 1115802--1115875 Score: 57
Period size: 18 Copynumber: 4.4 Consensus size: 17
1115792 ATTAAATAAA
1115802 AAATAAAATAATATTAAT
1 AAAT-AAATAATATTAAT
*
1115820 AAA-ATAGTAA-A-TAA-
1 AAATA-AATAATATTAAT
1115834 AAATAAATAATATTAAT
1 AAATAAATAATATTAAT
* * *
1115851 ATAATATATAATAATAAA
1 A-AATAAATAATATTAAT
1115869 AAATAAA
1 AAATAAA
1115876 ATTTTAAAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
14 7 0.16
15 5 0.11
16 5 0.11
17 10 0.23
18 17 0.39
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (17 bp):
AAATAAATAATATTAAT
Found at i:1115915 original size:38 final size:38
Alignment explanation
Indices: 1115868--1116068 Score: 126
Period size: 38 Copynumber: 5.2 Consensus size: 38
1115858 ATAATAATAA
* *
1115868 AAAATAAAATTTT-AAAACTATATATCATATATGCGTTTT
1 AAAA-AAAATTTTCAAAACTATATATTATATAT-CATTTT
* *
1115907 AAAAAAAATTATTTTCAAAACCATATAATATAATAT-ATTTT
1 -AAAAAAA--ATTTTCAAAACTATATATTAT-ATATCATTTT
* * *
1115948 CAAAAATATTTT-AAAACTATATATTATACAT-ATTTTT
1 AAAAAAAATTTTCAAAACTATATATTATATATCA-TTTT
* **
1115985 TAAAAATGTTTTCAAAACTATATATTATATATGCATTTT
1 AAAAAAAATTTTCAAAACTATATATTATATAT-CATTTT
* ** *
1116024 -TAAAATGTTTTCAAAAATTATATATTGTATATAT-ATTTT
1 AAAAAAAATTTTC-AAAACTATATA-T-TATATATCATTTT
*
1116063 CAAAAA
1 AAAAAA
1116069 CTATATATAT
Statistics
Matches: 134, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
36 4 0.03
37 27 0.20
38 34 0.25
39 22 0.16
40 15 0.11
41 16 0.12
42 12 0.09
43 4 0.03
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (38 bp):
AAAAAAAATTTTCAAAACTATATATTATATATCATTTT
Found at i:1116063 original size:28 final size:27
Alignment explanation
Indices: 1116031--1116087 Score: 87
Period size: 28 Copynumber: 2.1 Consensus size: 27
1116021 TTTTAAAATG
* *
1116031 TTTTCAAAAATTATATATTGTATATATA
1 TTTTCAAAAACTATATA-TATATATATA
1116059 TTTTCAAAAACTATATATATATATATA
1 TTTTCAAAAACTATATATATATATATA
1116086 TT
1 TT
1116088 CAAAATGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (27 bp):
TTTTCAAAAACTATATATATATATATA
Found at i:1116089 original size:25 final size:26
Alignment explanation
Indices: 1116033--1116092 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
1116023 TTAAAATGTT
* *
1116033 TTCAAAAATTATATATTGTATATATATT
1 TTCAAAAACTATATA-T-TATATATATA
1116061 TTCAAAAACTATATA-TATATATATA
1 TTCAAAAACTATATATTATATATATA
1116086 TTCAAAA
1 TTCAAAA
1116093 TGTTTTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 16 0.53
28 14 0.47
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (26 bp):
TTCAAAAACTATATATTATATATATA
Found at i:1116127 original size:37 final size:34
Alignment explanation
Indices: 1116059--1116195 Score: 183
Period size: 37 Copynumber: 4.0 Consensus size: 34
1116049 TGTATATATA
1116059 TTTTCAAAAACTATATATATATATATATTCAAAAT
1 TTTTCAAAAACTATATATATATATAT-TTCAAAAT
1116094 GTTTTCAAAAACTATATATTATATATATTTTCAAAAT
1 -TTTTCAAAAACTATATA-TATATATA-TTTCAAAAT
1116131 ATTTTCAAAAAC----TATATATATATTTCAAAAT
1 -TTTTCAAAAACTATATATATATATATTTCAAAAT
*
1116162 ATTTCAAAAACTATATATTATATATATTTCAAAA
1 TTTTCAAAAACTATATA-TATATATATTTCAAAA
1116196 ACCGATTTTT
Statistics
Matches: 92, Mismatches: 2, Indels: 15
0.84 0.02 0.14
Matches are distributed among these distances:
30 10 0.11
31 9 0.10
32 8 0.09
33 2 0.02
34 2 0.02
35 16 0.17
36 17 0.18
37 27 0.29
38 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (34 bp):
TTTTCAAAAACTATATATATATATATTTCAAAAT
Found at i:1116149 original size:30 final size:30
Alignment explanation
Indices: 1116113--1116184 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
1116103 AACTATATAT
1116113 TATATATAT-TTTCAAAATATTTTCAAAAAC
1 TATATATATATTTCAAAATA-TTTCAAAAAC
1116143 TATATATATATTTCAAAATATTTCAAAAAC
1 TATATATATATTTCAAAATATTTCAAAAAC
1116173 TATATATTATAT
1 TATATA-TATAT
1116185 ATATTTCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.62
31 15 0.38
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (30 bp):
TATATATATATTTCAAAATATTTCAAAAAC
Found at i:1116150 original size:103 final size:102
Alignment explanation
Indices: 1115950--1116195 Score: 299
Period size: 103 Copynumber: 2.4 Consensus size: 102
1115940 TATATTTTCA
* * *
1115950 AAAATATTTT--AAAACTATATATTATACATATTTTTTAAAAATGTTTTCAAAACTATATATTAT
1 AAAATATTTTCAAAAACTATATA-TAT--ATATATATTCAAAATGTTTTCAAAACTATATATTAT
* *
1116013 ATATGCATTTTTAAAATGTTTTCAAAAATTATATAT-TGT-
63 ATAT-CATTTTCAAAATATTTTCAAAAATTATATATATGTC
*
1116052 ATATATATTTTCAAAAACTATATATATATATATATTCAAAATGTTTTCAAAAACTATATATTATA
1 A-AAATATTTTCAAAAACTATATATATATATATATTCAAAATGTTTTC-AAAACTATATATTATA
*
1116117 TAT-ATTTTCAAAATATTTTCAAAAACTATATATATATTTC
64 TATCATTTTCAAAATATTTTCAAAAA-T-TATATATATGTC
1116157 AAAATA-TTTCAAAAACTATATAT-TATATATATTTCAAAA
1 AAAATATTTTCAAAAACTATATATATATATATA-TTCAAAA
1116196 ACCGATTTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
101 20 0.16
102 28 0.22
103 58 0.46
104 9 0.07
105 12 0.09
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (102 bp):
AAAATATTTTCAAAAACTATATATATATATATATTCAAAATGTTTTCAAAACTATATATTATATA
TCATTTTCAAAATATTTTCAAAAATTATATATATGTC
Found at i:1116172 original size:67 final size:69
Alignment explanation
Indices: 1116056--1116195 Score: 214
Period size: 67 Copynumber: 2.0 Consensus size: 69
1116046 TATTGTATAT
*
1116056 ATATTTTCAAAAACTATATATATATATATATTCAAAATGTTTTCAAAAACTATATATTATATATA
1 ATATTTTCAAAAAC---ATATATATATATATTCAAAATGATTTCAAAAACTATATATTATATATA
1116121 TTTTCAAA
63 -TTTCAAA
1116129 ATATTTTCAAAAAC-TATATATATAT-TTCAAAAT-ATTTCAAAAACTATATATTATATATATTT
1 ATATTTTCAAAAACATATATATATATATTCAAAATGATTTCAAAAACTATATATTATATATATTT
1116191 CAAA
66 CAAA
1116195 A
1 A
1116196 ACCGATTTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 7
0.89 0.01 0.09
Matches are distributed among these distances:
66 8 0.12
67 25 0.38
68 8 0.12
69 11 0.17
73 14 0.21
ACGTcount: A:0.48, C:0.09, G:0.01, T:0.43
Consensus pattern (69 bp):
ATATTTTCAAAAACATATATATATATATTCAAAATGATTTCAAAAACTATATATTATATATATTT
CAAA
Found at i:1118007 original size:16 final size:16
Alignment explanation
Indices: 1117986--1118016 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1117976 CAGTCATCTT
1117986 AAAAAATTATTAATTC
1 AAAAAATTATTAATTC
1118002 AAAAAATTATTAATT
1 AAAAAATTATTAATT
1118017 TATTCATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAAAATTATTAATTC
Found at i:1120472 original size:77 final size:77
Alignment explanation
Indices: 1120345--1120499 Score: 283
Period size: 77 Copynumber: 2.0 Consensus size: 77
1120335 AGGGTTGAGG
*
1120345 CAGTGGCATGTTAATAAGCTTCCCATGATTATTGAACTTAGCTGTAATCAGTGTGAGATGATCAA
1 CAGTGGCATGTTAATAAGCTTACCATGATTATTGAACTTAGCTGTAATCAGTGTGAGATGATCAA
1120410 CAACATAGGCTC
66 CAACATAGGCTC
* *
1120422 CAGTGGTATGTTAATAAGCTTACCATGATTATTGAACTTAGCTGTAATCAGTGTGATATGATCAA
1 CAGTGGCATGTTAATAAGCTTACCATGATTATTGAACTTAGCTGTAATCAGTGTGAGATGATCAA
1120487 CAACATAGGCTC
66 CAACATAGGCTC
1120499 C
1 C
1120500 TCCAACGGTT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (77 bp):
CAGTGGCATGTTAATAAGCTTACCATGATTATTGAACTTAGCTGTAATCAGTGTGAGATGATCAA
CAACATAGGCTC
Done.