Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008861.1 Hibiscus syriacus cultivar Beakdansim tig00112085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51468

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2941--2994
24
2.2
24
96
0
99
24
27
20
27
1.99
6294--6330
16
2.3
16
90
9
58
32
13
0
54
1.40
26707--26765
16
3.7
16
95
0
100
57
20
11
10
1.63
26699--26767
16
4.4
16
90
3
97
57
17
11
13
1.64
26987--27110
11
11.0
11
72
14
83
26
21
20
30
1.98
27009--27108
23
4.4
23
89
1
139
25
21
20
34
1.97
27043--27086
12
3.8
12
81
6
63
20
20
22
36
1.95
26987--27108
34
3.6
33
77
6
109
26
22
20
31
1.98
41087--41143
15
3.7
15
79
11
62
1
56
1
40
1.20
41099--41137
3
13.0
3
84
10
53
2
64
0
33
1.08
43550--43602
21
2.5
21
93
0
88
30
32
20
16
1.95
43614--43769
21
7.4
20
77
16
122
18
20
26
33
1.96
43598--43769
63
2.8
61
83
10
231
19
20
25
34
1.96
43598--43794
42
4.7
40
84
9
202
19
20
24
35
1.96
43598--43790
21
9.3
21
78
12
115
19
20
24
35
1.95
43887--43919
6
5.5
6
100
0
66
33
51
15
0
1.43
44674--44766
40
2.3
42
87
7
138
36
22
19
21
1.95
49591--49701
57
1.9
58
87
5
163
16
20
15
47
1.82

Tables:   1

The End!