Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008862.1 Hibiscus syriacus cultivar Beakdansim tig00112087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59311

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3128--3157
5
5.8
5
92
7
51
0
23
56
20
1.42
3127--3157
16
1.9
16
100
0
62
0
25
54
19
1.44
10360--10408
17
2.9
17
96
0
89
12
24
44
18
1.84
10419--10458
19
2.2
18
90
4
62
30
27
27
15
1.96
10419--10458
9
4.3
9
90
6
62
30
27
27
15
1.96
13161--13330
89
1.9
89
90
3
272
28
17
22
31
1.96
14067--14099
2
16.5
2
100
0
66
51
0
0
48
1.00
14613--14668
25
2.2
26
80
3
60
46
1
7
44
1.41
31152--31231
3
26.0
3
82
5
79
57
1
0
41
1.07
31158--31231
21
3.6
21
87
8
91
58
1
0
40
1.07
31158--31229
18
3.9
18
87
7
92
56
1
0
41
1.07
31583--31796
40
5.6
39
94
5
336
18
23
9
48
1.78
31733--32165
113
3.8
113
96
1
798
26
19
15
39
1.91
32851--33218
198
1.9
197
87
2
551
35
19
12
32
1.89
33067--33392
162
2.0
162
98
0
634
36
22
13
27
1.92
33091--33472
83
4.7
83
83
6
490
38
21
12
27
1.90
34621--34677
6
9.2
6
83
12
71
0
15
0
84
0.63
34620--34677
13
4.7
12
83
14
73
0
15
0
84
0.62
34627--34680
27
2.0
28
88
3
83
0
16
0
83
0.65
34630--34677
10
5.1
10
78
14
57
0
16
0
83
0.65
42004--42035
15
2.1
15
94
0
55
46
9
18
25
1.79
47443--47522
3
26.0
3
79
5
70
56
1
0
42
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49879--49955
3
25.3
3
97
2
145
33
0
0
66
0.92
50932--51004
31
2.4
30
82
11
85
41
1
4
53
1.28
50944--51011
31
2.2
31
86
7
93
41
1
2
54
1.24
51730--51816
31
2.8
30
81
10
95
54
3
1
41
1.25
51725--51792
19
3.5
20
73
15
54
54
1
2
41
1.24
53936--53976
11
3.7
12
81
12
52
46
0
2
51
1.14
55545--55627
40
2.0
42
83
4
107
50
2
2
44
1.28
56416--56444
15
1.9
15
100
0
58
17
55
6
20
1.65
58400--58566
20
8.4
20
77
13
148
40
23
14
20
1.91
58375--58570
60
3.3
59
78
13
220
40
23
14
20
1.90
58396--58648
60
4.2
59
75
14
200
39
22
13
24
1.90
58822--58859
16
2.5
15
84
12
51
28
5
0
65
1.14

Tables:   1

The End!