Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008863.1 Hibiscus syriacus cultivar Beakdansim tig00112095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108283

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1312--1441
3
42.7
3
84
7
156
62
1
2
33
1.17
1338--1405
25
2.7
25
82
11
52
63
1
2
32
1.18
1812--1938
50
2.5
49
82
5
155
19
27
37
15
1.92
5069--5108
4
10.2
4
89
5
64
52
25
0
22
1.47
16007--16071
32
2.0
32
96
0
121
38
38
7
15
1.76
17296--17411
44
2.6
45
87
2
153
47
9
0
42
1.42
17504--18037
133
4.0
133
81
1
570
30
16
21
32
1.95
17914--18113
87
2.3
87
77
5
208
28
15
21
35
1.93
19435--19492
21
2.8
20
75
17
64
5
18
0
75
0.98
19447--19492
10
4.5
10
84
10
58
2
21
0
76
0.90
28278--28320
15
2.9
15
82
0
59
11
0
27
60
1.31
35994--36043
21
2.4
21
89
0
73
20
10
30
40
1.85
36041--36085
23
2.0
23
100
0
90
26
26
17
28
1.98
44570--44599
7
4.4
7
95
4
53
60
10
0
30
1.30
44646--44763
45
2.6
45
89
2
166
45
12
0
41
1.42
44745--44773
2
14.5
2
100
0
58
48
0
0
51
1.00
45852--45896
18
2.6
17
93
6
74
33
6
31
28
1.83
46577--46658
38
2.2
38
91
4
130
39
37
10
12
1.78
46342--46882
249
2.2
249
88
6
815
37
27
11
23
1.89
52146--52193
15
3.2
15
88
5
62
10
62
16
10
1.53
56270--56312
4
10.8
4
94
0
77
72
0
2
25
0.97
60999--61075
3
25.3
3
89
2
82
42
0
0
57
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61555--61594
15
2.6
15
88
4
53
80
0
20
0
0.72
62459--62500
22
2.0
21
81
13
50
42
0
0
57
0.99
63685--63709
9
2.8
9
100
0
50
48
0
0
52
1.00
73839--73883
13
3.6
13
76
11
58
80
0
20
0
0.72
73837--73880
8
5.6
8
79
15
56
84
0
15
0
0.63
73838--73880
7
5.7
7
84
10
50
83
0
16
0
0.64
75017--75408
83
4.7
83
91
2
624
28
13
22
36
1.92
75015--75408
167
2.3
167
92
2
639
27
13
22
36
1.92
76138--76792
226
3.0
221
85
6
849
35
14
18
30
1.92
76138--76656
113
4.6
113
93
0
813
36
15
18
30
1.91
76558--76746
98
1.9
97
93
1
324
33
15
17
32
1.92
76720--76775
17
3.2
17
68
26
53
48
8
25
17
1.76
77023--77090
3
23.3
3
83
5
86
39
0
0
60
0.97
77026--77098
18
4.3
18
75
16
57
41
0
0
58
0.98
77567--77606
15
2.6
15
88
4
53
80
0
20
0
0.72
90526--90583
29
2.0
30
82
3
73
17
12
15
55
1.70
97111--97135
10
2.5
10
100
0
50
16
12
12
60
1.60
97394--97437
10
4.1
10
83
16
61
11
9
20
59
1.59
97395--97451
13
4.9
12
80
18
59
10
8
19
61
1.54
97395--97450
23
2.4
23
93
0
94
10
8
19
60
1.55

Tables:   1

The End!