genome.fa.s8864.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008864.1 Hibiscus syriacus cultivar Beakdansim tig00112098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59533

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244--1294	5	10.8	5	80	19	65	84	0	15	0	0.63
1242--1294	18	2.8	19	88	11	83	84	0	15	0	0.61
1230--1289	13	4.5	13	82	12	68	83	0	13	3	0.77
1230--1297	13	5.2	12	82	10	64	82	0	14	2	0.79
2433--2824	83	4.7	83	91	2	624	28	13	22	36	1.92
2431--2824	167	2.3	167	92	2	639	27	13	22	36	1.92
3553--4207	226	3.0	221	85	6	849	35	14	18	30	1.92
3553--4071	113	4.6	113	93	0	813	36	15	18	30	1.91
3973--4161	98	1.9	97	93	1	324	33	15	17	32	1.92
4135--4190	17	3.2	17	68	26	53	48	8	25	17	1.76
4437--4511	3	25.3	3	81	8	82	41	0	0	58	0.98
4441--4496	15	3.7	15	92	0	94	42	0	0	57	0.99
4441--4516	15	5.0	15	87	4	91	43	0	0	56	0.99
17953--18010	29	2.0	30	82	3	73	17	12	15	55	1.70
24858--24901	10	4.1	10	83	16	61	11	9	20	59	1.59
24859--24915	13	4.9	12	80	18	59	10	8	19	61	1.54
24859--24914	23	2.4	23	93	0	94	10	8	19	60	1.55
33851--33889	20	2.0	19	85	5	51	23	15	20	41	1.90
36260--36299	21	1.9	21	94	0	71	30	15	7	47	1.72
36294--36392	33	3.0	33	94	1	164	32	7	15	45	1.73
36378--36432	13	4.2	13	75	13	58	34	3	12	49	1.59
36628--36684	21	2.7	21	91	0	96	19	26	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36995--37026	16	2.0	17	88	11	50	43	18	21	15	1.87
44308--44334	14	1.9	14	100	0	54	44	7	7	40	1.60
44475--44505	2	15.5	2	100	0	62	48	0	0	51	1.00
44970--45081	33	3.4	33	91	0	179	29	31	12	26	1.93
48035--48192	55	2.9	54	83	6	178	24	24	20	31	1.98
48186--48688	55	9.1	55	87	4	692	28	26	14	31	1.95
48186--48688	165	3.0	164	90	1	772	28	26	14	31	1.95
49690--49740	8	6.5	8	80	11	52	9	11	0	78	0.97

Tables:   1

The End!