Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008865.1 Hibiscus syriacus cultivar Beakdansim tig00112099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59806

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--184
16
3.6
16
95
0
98
8
10
22
58
1.58
2569--2593
7
3.6
7
100
0
50
12
0
88
0
0.53
2924--2998
36
2.1
36
90
2
116
24
8
16
52
1.70
19792--19844
22
2.4
22
96
3
97
24
15
26
33
1.95
29323--29375
16
3.3
15
77
15
52
69
0
3
26
1.05
29623--29665
18
2.5
17
85
7
61
67
2
4
25
1.22
30656--31211
105
5.3
104
87
5
721
22
17
26
33
1.96
42894--42944
24
2.2
24
78
3
59
70
0
0
29
0.87
42888--42959
37
2.0
36
81
13
85
68
0
2
29
1.04
42918--43025
18
6.5
17
66
23
61
65
1
1
30
1.13
42907--43013
55
1.9
55
81
10
130
63
1
1
32
1.16
43382--43483
37
2.8
37
84
0
123
30
11
13
44
1.80
43594--43632
2
19.5
2
100
0
78
48
0
0
51
1.00
56424--56475
20
2.6
20
96
0
95
38
26
13
21
1.90
56528--56720
20
9.6
20
80
6
212
35
25
19
18
1.95
56527--56721
80
2.4
80
82
4
241
36
25
19
18
1.94
57095--57165
33
2.2
33
92
0
115
11
22
18
47
1.80
57285--57337
14
3.6
14
72
22
54
39
24
26
9
1.86
57285--57353
31
2.2
31
89
5
102
42
26
23
8
1.83
57349--57459
14
6.8
18
71
24
86
9
25
22
42
1.84
57354--57466
33
3.5
33
90
4
194
9
24
21
44
1.82
59132--59503
90
4.1
92
95
4
668
22
12
19
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59136--59505
181
2.0
181
95
3
674
21
12
18
46
1.83
59547--59672
19
7.3
19
71
23
98
45
29
16
8
1.77
59600--59656
13
3.8
13
74
26
51
45
29
17
7
1.75
59581--59672
32
2.8
32
95
1
157
46
28
17
7
1.75
59668--59801
19
7.6
19
78
15
128
10
19
24
45
1.81
59690--59745
14
3.7
14
80
17
67
8
21
25
44
1.81
59673--59764
32
2.8
33
95
3
168
9
20
22
46
1.80

Tables:   1

The End!