genome.fa.s8866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008866.1 Hibiscus syriacus cultivar Beakdansim tig00112100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80310

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8897--8958	18	3.5	17	74	20	56	67	1	3	27	1.15
9604--9708	37	2.8	37	79	0	120	31	13	12	42	1.81
9816--9850	2	17.5	2	100	0	70	48	0	0	51	1.00
22517--22568	20	2.6	20	96	0	95	38	26	13	21	1.90
22558--22656	21	4.8	20	72	6	72	36	23	19	21	1.95
22623--22816	20	9.6	20	81	5	221	35	25	19	19	1.95
22623--22816	60	3.2	60	83	0	253	35	25	19	19	1.95
23195--23265	33	2.2	33	92	0	115	11	22	18	47	1.80
23386--23439	14	3.6	14	77	18	63	40	24	25	9	1.85
23396--23444	16	3.1	16	72	21	57	44	22	24	8	1.79
23451--23548	19	5.7	19	70	22	81	10	24	22	42	1.84
23473--23562	14	5.7	14	74	23	81	8	25	23	42	1.83
23456--23570	33	3.5	33	95	0	212	9	24	20	45	1.81
25240--25613	91	4.1	93	95	3	697	22	12	18	45	1.83
25657--25782	19	7.3	19	72	21	98	45	28	17	8	1.78
25673--25727	18	3.0	18	86	2	74	47	25	18	9	1.78
25692--25782	33	2.9	31	88	4	130	46	27	18	7	1.76
25778--25912	19	7.6	19	76	16	137	10	19	24	45	1.81
25800--25856	14	3.7	14	77	20	60	8	21	24	45	1.80
25783--25875	33	2.8	33	98	0	177	9	20	22	47	1.79
27677--27710	11	3.0	11	86	4	50	17	0	17	64	1.29
27690--27762	38	1.9	38	97	0	137	28	1	16	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27685--27749	19	3.4	19	64	8	51	24	1	15	58	1.46
27744--27779	14	2.6	14	95	0	63	33	0	22	44	1.53
27884--27985	19	5.6	19	84	13	151	44	17	23	14	1.86
27992--28250	33	7.5	33	72	19	140	13	20	16	49	1.80
28014--28335	19	18.4	19	77	19	328	13	20	17	49	1.79
28033--28335	33	8.8	33	72	18	217	12	20	17	49	1.79
27992--28296	158	1.9	158	95	1	549	13	21	16	48	1.80
27992--28307	52	6.0	52	90	3	510	13	21	16	48	1.80
30595--30619	12	2.1	12	100	0	50	0	28	0	72	0.86
31495--31863	20	18.5	20	85	5	442	20	18	26	34	1.96
40421--40478	23	2.5	23	94	0	98	41	20	6	31	1.79
41690--41725	5	7.2	5	100	0	72	38	0	61	0	0.96
43844--43899	24	2.3	24	96	0	103	26	17	16	39	1.91
44624--44793	60	2.9	60	77	12	149	35	21	4	39	1.72
44910--45067	60	2.7	60	75	8	155	43	4	20	32	1.72
45798--45890	29	3.2	29	70	11	100	45	4	17	33	1.68
45747--45900	58	2.6	59	87	5	213	45	6	16	31	1.73
45811--45905	29	3.3	29	69	5	84	46	6	14	32	1.70
47188--47294	45	2.3	46	85	4	146	31	15	22	29	1.95
51420--51497	3	26.0	3	77	10	70	61	0	2	35	1.10
52150--52201	20	2.6	20	96	0	95	23	19	25	32	1.97
57523--57659	65	2.1	65	85	6	181	26	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57670--57707	20	1.9	20	88	0	58	18	13	34	34	1.89
59175--60960	892	2.0	892	99	0	3536	26	21	16	35	1.94
76404--76455	20	2.5	21	81	3	61	40	19	23	17	1.91
76444--76557	20	5.7	20	82	6	113	31	24	19	24	1.98
76441--76557	61	1.9	61	85	0	162	33	23	18	23	1.97
77151--77295	19	8.1	19	75	16	139	12	23	19	44	1.84
77151--77287	52	2.6	52	91	1	211	12	23	20	43	1.85
77206--77270	33	2.0	33	90	0	103	12	24	21	41	1.87
78734--78925	63	3.0	63	99	0	375	20	18	36	24	1.94
79487--79575	42	2.1	42	80	0	106	21	38	16	23	1.93

Tables:   1

The End!