genome.fa.s8868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008868.1 Hibiscus syriacus cultivar Beakdansim tig00112102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66495

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4652--4682	15	2.1	15	100	0	62	38	19	22	19	1.93
14195--14288	4	23.5	4	78	8	84	20	2	5	72	1.15
20302--20515	83	2.6	82	83	3	259	30	15	19	34	1.93
20767--20872	41	2.6	40	86	7	135	33	18	22	25	1.97
22293--22347	22	2.5	22	100	0	110	16	21	12	49	1.79
25030--25155	62	2.0	62	100	0	252	26	15	9	48	1.76
37368--37504	60	2.3	60	78	5	134	37	12	15	35	1.85
39542--39728	4	46.8	4	68	12	80	23	3	5	66	1.30
39591--39632	11	3.7	12	81	12	52	14	0	7	78	0.95
39591--39628	15	2.5	15	91	0	67	13	0	7	78	0.94
39642--39670	15	1.9	15	100	0	58	34	0	0	65	0.93
39545--39701	23	6.9	22	70	12	97	22	3	6	66	1.31
41870--41914	18	2.5	18	70	0	54	35	4	0	60	1.17
41877--41921	18	2.8	15	75	18	54	40	4	0	55	1.20
44831--44859	5	5.8	5	100	0	58	20	0	20	58	1.39
46963--47002	16	2.5	16	95	0	71	42	12	12	32	1.80
51303--51448	78	1.9	78	88	0	220	36	13	13	35	1.85
53006--53123	21	5.7	21	71	6	71	34	26	16	22	1.95
53108--53162	20	2.8	19	80	5	65	45	25	18	10	1.82
53149--53263	20	5.7	20	83	6	160	33	26	18	20	1.96
53110--53264	40	3.8	40	81	4	177	38	25	18	18	1.93
53646--53716	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53796--53905	21	5.8	20	76	17	117	46	18	23	11	1.82
53796--53905	41	2.9	39	81	15	142	46	18	23	11	1.82
53856--53912	14	3.7	14	75	20	60	43	22	24	8	1.81
53848--53928	33	2.5	33	95	0	144	46	22	22	8	1.78
53924--54021	19	5.7	19	70	22	90	11	22	22	43	1.84
53946--54035	14	5.7	14	69	23	63	10	23	23	43	1.83
53929--54043	33	3.5	33	95	0	212	10	22	20	46	1.81
55734--56109	93	4.1	93	98	0	727	22	12	19	45	1.83
56157--56285	19	7.3	19	75	17	125	45	28	17	8	1.77
56193--56285	33	2.8	32	91	4	150	46	27	18	7	1.76
56157--56285	52	2.5	52	74	14	140	45	28	17	8	1.77
56281--56415	19	7.6	19	75	16	128	11	19	23	45	1.82
56303--56359	14	3.7	14	77	20	60	10	21	22	45	1.82
56286--56378	33	2.8	33	95	0	168	10	20	21	47	1.80
58333--58368	14	2.6	14	95	0	63	33	0	22	44	1.53
58474--58590	19	6.4	19	87	10	181	46	17	22	14	1.84
58474--58590	33	3.2	36	84	13	159	46	17	22	14	1.84
58492--58609	53	2.2	53	96	1	220	44	17	24	13	1.85
58599--58801	19	11.7	19	73	20	194	15	21	17	45	1.85
58599--58806	71	3.0	70	87	6	291	14	22	16	45	1.84
58697--58748	14	3.4	14	72	23	50	11	25	19	44	1.84
58605--58815	33	6.2	33	86	8	307	14	21	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58605--58823	67	3.2	66	89	5	305	14	21	17	46	1.83
62013--62303	20	14.5	20	84	2	314	19	16	24	39	1.91
62290--62368	21	3.8	21	75	0	77	24	17	22	35	1.95
62270--62368	42	2.4	43	78	8	107	22	18	22	37	1.94
62942--63060	45	2.7	46	81	5	145	42	14	3	40	1.62
63060--63109	21	2.4	21	80	6	57	58	8	0	34	1.28
63320--63367	23	2.1	23	84	0	60	35	10	18	35	1.85
63796--63854	23	2.6	23	91	0	91	38	18	5	37	1.73
64274--64359	39	2.2	39	93	0	145	18	13	18	48	1.80
64616--64652	18	2.1	18	89	0	56	51	10	5	32	1.60
65088--65146	23	2.6	23	94	0	100	40	16	5	37	1.71

Tables:   1

The End!