genome.fa.s8869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008869.1 Hibiscus syriacus cultivar Beakdansim tig00112103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118230

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490--545	15	3.7	15	90	7	87	32	17	14	35	1.90
2082--2120	15	2.6	16	80	12	55	35	30	2	30	1.71
17653--17751	33	3.2	33	75	16	129	51	1	6	41	1.33
17645--17726	27	2.8	29	76	12	87	47	1	7	43	1.38
17968--18010	18	2.2	20	84	8	54	67	0	13	18	1.23
21470--21562	21	4.6	20	79	4	105	39	18	23	18	1.92
21467--21562	41	2.3	41	96	0	174	40	17	22	18	1.91
21489--21623	41	3.3	41	81	6	123	38	20	20	20	1.94
21551--21645	20	4.7	20	80	2	91	34	24	17	23	1.96
21833--21876	22	2.0	22	95	0	79	20	45	15	18	1.85
22120--22163	20	2.2	20	87	0	61	11	18	20	50	1.77
23481--23525	18	2.5	18	85	0	63	26	42	15	15	1.87
23997--24063	20	3.4	20	81	2	73	38	23	22	14	1.92
24052--24109	14	3.9	14	79	16	71	48	25	17	8	1.75
24036--24126	32	2.8	33	94	3	166	47	23	18	10	1.80
23997--24131	19	7.6	19	71	19	85	42	23	20	12	1.86
24143--24182	14	2.9	14	96	0	71	7	12	27	52	1.66
24183--24237	20	2.8	19	89	5	83	16	25	23	34	1.95
26102--26137	14	2.6	14	90	0	54	30	0	22	47	1.52
26254--26321	19	3.8	19	85	14	101	47	17	22	13	1.82
26340--26396	20	2.8	20	91	0	87	21	21	17	40	1.92
26764--26799	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27354--27389	14	2.6	14	90	0	54	30	0	22	47	1.52
26360--28186	590	3.1	590	99	0	3609	31	12	19	36	1.88
27944--27979	14	2.6	14	90	0	54	30	0	22	47	1.52
30705--30845	19	7.8	19	69	17	86	43	19	24	13	1.86
30730--30828	33	3.0	33	89	1	144	39	21	26	13	1.90
30800--30850	19	2.7	19	96	0	93	45	21	21	11	1.84
30846--30912	19	3.5	19	83	2	80	10	16	23	49	1.77
31471--31550	21	3.9	21	75	6	65	18	18	20	42	1.89
31434--31527	20	4.7	20	80	2	89	23	18	24	34	1.96
31455--31589	41	3.3	41	80	4	121	20	21	20	38	1.94
31516--31608	21	4.6	20	77	4	96	18	24	17	39	1.91
31516--31611	41	2.3	41	94	0	165	18	23	16	40	1.91
34854--34900	21	2.2	21	92	7	78	63	0	0	36	0.94
35016--35250	109	2.1	111	89	6	352	40	5	7	45	1.57
36432--36465	17	2.0	18	88	11	54	29	0	5	64	1.17
39375--39401	2	13.5	2	100	0	54	51	0	0	48	1.00
42284--42318	18	1.9	18	88	0	52	28	17	0	54	1.43
43473--43555	19	4.6	19	82	14	113	18	36	28	16	1.93
43497--43563	14	4.4	14	81	17	80	19	37	28	14	1.91
43479--43563	33	2.6	33	96	0	152	20	36	28	15	1.92
47310--47344	18	1.9	18	88	0	52	28	17	0	54	1.43
48498--48580	19	4.6	19	82	14	113	18	36	28	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48522--48588	14	4.4	14	81	17	80	19	37	28	14	1.91
48504--48588	33	2.6	33	96	0	152	20	36	28	15	1.92
52478--52520	19	2.3	19	100	0	86	18	25	9	46	1.79
53887--53932	16	2.9	16	90	0	65	43	4	15	36	1.66
76224--76263	20	2.0	20	100	0	80	45	5	20	30	1.72
76417--76491	38	2.0	37	84	5	98	48	4	1	46	1.29
92128--92259	46	2.8	48	88	4	205	28	20	18	32	1.96
91995--92217	112	2.0	112	91	1	358	26	22	17	33	1.96
92176--92608	113	3.9	113	89	2	644	28	23	17	30	1.97
100482--100847	183	2.0	181	91	4	594	40	3	9	46	1.54
113924--114096	86	2.0	86	93	2	294	31	24	20	24	1.98

Tables:   1

The End!