genome.fa.s8871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008871.1 Hibiscus syriacus cultivar Beakdansim tig00112106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94199

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281--3317	19	1.9	19	88	0	56	32	27	16	24	1.96
3302--3356	20	2.8	20	75	5	58	29	29	16	25	1.97
4248--4284	14	2.6	14	91	4	56	51	21	21	5	1.68
6319--6349	12	2.6	12	94	0	53	48	29	6	16	1.70
6407--6689	140	2.0	140	95	0	503	28	13	14	43	1.83
6660--6760	20	5.1	20	88	0	148	36	17	18	26	1.94
6660--6760	40	2.5	40	91	0	166	36	17	18	26	1.94
6795--6892	20	4.9	20	92	0	151	13	18	24	43	1.85
8461--8538	21	3.7	21	78	0	102	21	17	38	21	1.93
8441--8543	42	2.5	42	81	0	134	23	19	33	23	1.97
9102--9140	19	2.0	20	90	5	62	51	20	15	12	1.76
9212--9260	20	2.5	20	93	0	80	18	20	26	34	1.95
9212--9279	20	3.4	20	81	4	66	17	17	26	38	1.92
11161--11236	20	3.8	20	87	0	107	52	21	14	11	1.73
11244--11315	34	2.1	34	85	12	96	45	22	18	13	1.84
11705--11755	22	2.3	22	93	0	84	19	13	43	23	1.87
11930--12056	20	6.2	20	75	10	105	25	16	24	33	1.96
11898--12015	61	1.9	61	87	0	173	27	18	22	31	1.97
11942--12076	41	3.3	41	87	3	166	25	16	22	36	1.94
11898--12116	102	2.1	102	81	3	244	28	16	21	33	1.95
12131--12195	19	3.4	19	86	2	67	21	16	27	33	1.95
12142--12197	19	2.9	19	91	0	85	21	16	26	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17773--17974	42	5.0	41	87	7	265	15	50	13	20	1.77
17783--17944	36	4.2	36	82	11	171	16	50	13	19	1.77
17783--17974	78	2.4	79	85	7	248	15	50	14	20	1.78
18060--18248	66	2.9	66	87	1	200	16	47	20	14	1.82
18093--18248	33	4.7	33	95	0	267	16	46	21	15	1.83
18084--18305	66	3.4	66	85	1	266	15	50	18	15	1.79
18084--18305	99	2.2	99	83	3	286	15	50	18	15	1.79
36870--36915	19	2.3	20	81	7	58	28	30	17	23	1.97
36926--37002	20	3.8	20	70	16	77	14	23	22	40	1.90
36930--37023	41	2.3	41	83	10	129	17	21	24	37	1.94
37012--37132	41	3.0	41	96	0	215	19	17	23	40	1.91
36950--37067	62	1.9	62	91	0	191	19	18	24	37	1.94
37753--37782	6	5.0	6	91	0	51	3	16	46	33	1.64
38329--38364	16	2.2	16	90	9	56	83	0	0	16	0.65
38334--38368	18	1.9	18	88	11	54	82	0	0	17	0.66
38230--38395	87	1.9	88	83	6	221	57	9	9	22	1.59
40569--40603	18	1.9	18	88	0	52	14	40	17	28	1.88
48567--48643	24	3.2	24	85	3	111	6	44	24	24	1.77
58511--58555	22	2.0	22	100	0	90	28	26	17	26	1.98
66062--66099	14	2.7	14	87	0	58	23	18	31	26	1.97
69302--69365	25	2.6	25	79	0	83	57	4	0	37	1.19
70432--70494	3	21.7	3	90	6	103	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71819--71886	2	34.5	2	97	2	129	48	0	0	51	1.00
71864--71968	48	2.2	48	83	6	133	31	8	10	49	1.67
71885--71978	47	2.0	48	93	2	163	27	9	12	50	1.72
72093--72154	2	31.0	2	100	0	124	50	0	0	50	1.00
72271--72302	2	16.0	2	100	0	64	50	0	0	50	1.00
72403--72448	24	1.9	24	100	0	92	39	4	6	50	1.48
84177--84265	7	12.6	7	73	25	64	76	1	13	8	1.07
84199--84273	28	2.6	28	88	12	109	78	0	13	8	0.95
84169--84273	42	2.5	39	78	17	97	77	0	14	7	1.04
84199--84271	18	3.8	19	81	16	89	78	0	13	8	0.97
84171--84273	35	3.0	35	76	17	108	76	0	14	7	1.05
85280--85449	92	1.8	92	91	0	277	38	15	22	23	1.92
85607--85773	91	1.8	92	89	3	266	41	13	19	24	1.88
85291--85978	332	2.1	332	90	1	1067	37	16	20	25	1.93
86146--86188	3	14.7	3	85	4	61	37	0	2	60	1.10
87419--87926	91	5.4	89	65	21	250	30	7	13	47	1.71
87512--87839	49	6.7	49	70	15	232	30	7	13	49	1.69
87512--87645	50	2.7	50	89	2	207	29	7	12	50	1.68
87701--87818	54	2.2	53	90	1	182	31	7	10	50	1.64
87397--88090	194	3.5	194	91	5	1019	30	7	13	48	1.70
87940--87969	2	15.0	2	100	0	60	50	0	0	50	1.00
88208--88252	24	1.9	24	95	4	83	40	4	6	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91323--91370	25	1.9	25	91	0	78	39	12	2	45	1.54
91875--91901	2	13.5	2	100	0	54	48	0	0	51	1.00
92756--92830	29	2.6	28	75	6	71	57	1	5	36	1.30

Tables:   1

The End!