Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008872.1 Hibiscus syriacus cultivar Beakdansim tig00112107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 385822
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:1704 original size:199 final size:199
Alignment explanation
Indices: 1307--2461 Score: 2083
Period size: 199 Copynumber: 5.8 Consensus size: 199
1297 TTTAAATTAG
*
1307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
*
1372 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTTGGGTTCGATGATTTTGGGA
1437 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AA
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAA
1501 AAAAA
195 AAAAA
*
1506 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1571 ATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTTGGG
66 ATTGTACCGG-TTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TTTTGGG
*
1636 ATCGACAC-TTTT-TATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAA
129 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAA
1699 AAAAAA
194 AAAAAA
*
1705 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1770 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
1834 CGACACTTTTTATATATGGATCGACAC-TTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
1898 AAAA
196 AAAA
*
1902 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1967 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
2032 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
2097 AAAA
196 AAAA
2101 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
*
2166 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTCGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
2231 CGACACTTTTTATATATGGATTGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
2296 AAAA
196 AAAA
* *
2300 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAGA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
* * *
2365 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTTGGGA
*
2430 TTGACAC-TTTT-TATATGGATCGACAC-TTATGG
130 TCGACACTTTTTATATATGGATCGACACTTTATGG
2462 TAAATTTGCC
Statistics
Matches: 930, Mismatches: 18, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
196 14 0.02
197 172 0.18
198 157 0.17
199 521 0.56
200 66 0.07
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAA
Found at i:2057 original size:396 final size:396
Alignment explanation
Indices: 1307--2461 Score: 2102
Period size: 396 Copynumber: 2.9 Consensus size: 396
1297 TTTAAATTAG
*
1307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
*
1372 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTTGGGTTCGATGATTTTGGGA
1437 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG-AA
130 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAA
1501 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
195 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
1566 GTATAATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTT
260 GTATAATTGTACCGG-TTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TT
* *
1631 TTGGGATCGACACTTTTTATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTG
323 TTGGGATCGACACTTTTTATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTG
1696 GAAAAAAAA
388 GAAAAAAAA
*
1705 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1770 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
1834 CGACACTTTTTATATATGGATCGACAC-TTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
* *
1898 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
1963 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
2028 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGG
326 GGATCGACAC-TTTT-TATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGG
2093 AAAAAAAA
389 AAAAAAAA
2101 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
*
2166 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTCGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
2231 CGACACTTTTTATATATGGATTGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
2296 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
* * * *
2361 TAGACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTT
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGATTTT
*
2426 GGGATTGACACTTTTTATATGGATCGACAC-TTATGG
325 GGGATCGACACTTTTTATATGGATCGACACTTTATGG
2462 TAAATTTGCC
Statistics
Matches: 734, Mismatches: 17, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
394 15 0.02
395 83 0.11
396 296 0.40
397 63 0.09
398 256 0.35
399 21 0.03
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (396 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGGAA
AAAAAA
Found at i:2447 original size:595 final size:595
Alignment explanation
Indices: 1307--2461 Score: 2095
Period size: 595 Copynumber: 1.9 Consensus size: 595
1297 TTTAAATTAG
*
1307 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
*
1372 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
*
1437 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAAA
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGGAAA
*
1502 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGG
1567 TATAATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
261 TATAATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
*
1632 TGGGATCGACACTTTTTATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
326 TCGGATCGACACTTTTTATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
*
1697 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAA
391 AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAA
*
1762 CCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
456 CCGGTAGAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
1827 TTGGGATCGACACTTTTTATATATGGATCGACACTTATGGGTGCACCCTGTTTTCCATTCATTCT
521 TTGGGATCGACACTTTTTATATATGGATCGACACTTATGGGTGCACCCTGTTTTCCATTCATTCT
1892 GGAAAAAAAA
586 GGAAAAAAAA
*
1902 TATCGACACAAACTATATTAGTGTCGACACATTATTTATACATATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
1967 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTTGGGTTCGATGATTTTGGGA
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
2031 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGGAAA
131 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGG-AA
2096 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCG
195 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCG
2161 GTATAATTGTACCGG-TTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGA-TT
260 GTATAATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTT
* *
2224 TTCGGATCGACACTTTTTATATATGGATTGACACTTTATGGGTGCACCCTGTTTTCCATTCATTC
325 TTCGGATCGACAC-TTTT-TATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTC
*
2289 TGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATA
388 TGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATA
* *
2354 AAACCGGTAGACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGA
453 AAACCGGTAGAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGA
* *
2419 TGTTTTTGGGATTGACAC-TTTT-TATATGGATCGACACTTATGG
517 TG-ATTTGGGATCGACACTTTTTATATATGGATCGACACTTATGG
2462 TAAATTTGCC
Statistics
Matches: 540, Mismatches: 15, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
593 14 0.03
594 134 0.25
595 368 0.68
596 11 0.02
597 13 0.02
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (595 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTTGGGTTCGATGATTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCATGTTTTCCATTCATTCTGGAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAACCGG
TATAATTGTACCGGTTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTT
TCGGATCGACACTTTTTATATGAATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGG
AAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTATCTCATAAAA
CCGGTAGAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGAT
TTGGGATCGACACTTTTTATATATGGATCGACACTTATGGGTGCACCCTGTTTTCCATTCATTCT
GGAAAAAAAA
Found at i:2594 original size:19 final size:19
Alignment explanation
Indices: 2570--2614 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
2560 TTATATTCAC
2570 ATACAAAAATATAAATCGT
1 ATACAAAAATATAAATCGT
* *
2589 ATACAAAATTATAAATCTT
1 ATACAAAAATATAAATCGT
2608 ATACAAA
1 ATACAAA
2615 TTAACCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.29
Consensus pattern (19 bp):
ATACAAAAATATAAATCGT
Found at i:4528 original size:21 final size:21
Alignment explanation
Indices: 4503--4567 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
4493 CCCCTTATGC
* *
4503 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
* *
4524 CTCTCGAGTTTCTCTACGACT
1 CTCTCAAGTTTCTCTTCGACT
**
4545 CGATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
4566 CT
1 CT
4568 TGATTGTCTT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:6826 original size:19 final size:19
Alignment explanation
Indices: 6781--6826 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6771 TCCGGTATCA
6781 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
6800 TTGATACCGG-TTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
6820 TTTTACC
1 TTTTACC
6827 TGTTATATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:6994 original size:19 final size:20
Alignment explanation
Indices: 6960--7005 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
6950 ATCGGTAACG
6960 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
6979 TTGTTACCGG-TTTATCATAT
1 TT-TTACCGGTTTTATCATAT
6999 TTTTACC
1 TTTTACC
7006 TAGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:7110 original size:178 final size:179
Alignment explanation
Indices: 6748--7214 Score: 672
Period size: 179 Copynumber: 2.6 Consensus size: 179
6738 CGTACTTACG
* * * *
6748 AAAGTATCGACACTTTCAATTTATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
*
6813 ATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTATA
66 ATCATATTTTTACCTGTTATATCGTTTTGGATCGATATA-TTTTTTAAAGTATCGACACATTATA
* *
6878 GGCGCTATAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
130 GGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
6928 AAAGTATCGACACTTTTAATATAT-CGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
6992 ATCATATTTTTACCTAG-TATATCGTTTTGGATCGATACATTTTTTAAAGTATCGACACTTTATA
66 ATCATATTTTTACCT-GTTATATCGTTTTGGATCGATATATTTTTTAAAGTATCGACACATTATA
** *
7056 GGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATAT
130 GGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* * * * *
7106 AAAGTACCGACACTTTAAATGTATCCGGTAGCG-CTGACCGGTTTTATCATTTCT-ATACCGGTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTT-TGATACCGG-T
* * *
7169 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACATATTTTT
64 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATATATTTTT
7215 AATTTGGATC
Statistics
Matches: 258, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
178 114 0.44
179 121 0.47
180 23 0.09
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (179 bp):
AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
ATCATATTTTTACCTGTTATATCGTTTTGGATCGATATATTTTTTAAAGTATCGACACATTATAG
GAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:7216 original size:178 final size:177
Alignment explanation
Indices: 6748--7216 Score: 640
Period size: 178 Copynumber: 2.6 Consensus size: 177
6738 CGTACTTACG
* * * *
6748 AAAGTATCGACACTTTCAATTTATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAAC-GTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
6813 ATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTATA
65 ATCATATTTTTACCTGTTATATCGTTTTGGATCGACATA--TTTTTAAAGTATCGACACATTATA
* *
6878 GGCGCTATAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
128 GGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
6928 AAAGTATCGACACTTTTAATATAT-CGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACG-TTTACCGGTTTTATCATTTTGATACCGGTTT
*
6992 ATCATATTTTTACCTAG-TATATCGTTTTGGATCGATACAT-TTTTTAAAGTATCGACACTTTAT
65 ATCATATTTTTACCT-GTTATATCGTTTTGGATCG--ACATATTTTTAAAGTATCGACACATTAT
** *
7055 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATAT
127 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* * * * *
7106 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTGACCGGTTTTATCATTTCT-ATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTACCGGTTTTATCATTT-TGATACCGG-TT
* *
7170 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACATATTTTTAA
64 TATCATATTTTTACCTGTTATATCGTTTTGGATCGACATATTTTTAA
7217 TTTGGATCGA
Statistics
Matches: 258, Mismatches: 22, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
177 4 0.02
178 120 0.47
179 108 0.42
180 23 0.09
181 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.42
Consensus pattern (177 bp):
AAAGTATCGACACTTTAAATATATCCGGTAACGTTTACCGGTTTTATCATTTTGATACCGGTTTA
TCATATTTTTACCTGTTATATCGTTTTGGATCGACATATTTTTAAAGTATCGACACATTATAGGA
GCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:7595 original size:223 final size:224
Alignment explanation
Indices: 7281--7755 Score: 810
Period size: 223 Copynumber: 2.1 Consensus size: 224
7271 ACCTACTTTT
7281 ATAAGTATGGACACTTTTATAAAAATGATATATACTTCTTTGAAAGTTATGTAATTTATGTTTCA
1 ATAAGTATGGACACTTTTAT-AAAATGATATATACTTCTTTGAAAGTTATGTAATTTATGTTTCA
7346 ATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAA
65 ATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAA
*
7411 ATATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAAC-A-AACCAA
130 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATAACCAA
* *
7474 ATATAATAATAAATATGTTTTCAACAGTGAA
195 AGATAATAATAAATATATTTTC-ACAGTGAA
* *
7505 ATAAGTATGAACACTTTTATAAAATGATATATACTTTTTTGAAAGTTATGTAATTTATGTTTCAA
1 ATAAGTATGGACACTTTTATAAAATGATATATACTTCTTTGAAAGTTATGTAATTTATGTTTCAA
* *
7570 TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAA
66 TTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAA
* *
7635 AATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGATTTTAAATTTAACAATATTAACT
131 AATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAAC-A-A-TAACC
7700 AAAGATAATAATAAATATATTTTCACAGTGAA
193 AAAGATAATAATAAATATATTTTCACAGTGAA
7732 ATAAGTATGGACACTTTTATAAAA
1 ATAAGTATGGACACTTTTATAAAA
7756 AGGATAGATA
Statistics
Matches: 236, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
223 160 0.68
224 19 0.08
226 1 0.00
227 31 0.13
228 25 0.11
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (224 bp):
ATAAGTATGGACACTTTTATAAAATGATATATACTTCTTTGAAAGTTATGTAATTTATGTTTCAA
TTTATTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTAATTTACACAAAA
AATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATAACCAAA
GATAATAATAAATATATTTTCACAGTGAA
Found at i:8215 original size:21 final size:21
Alignment explanation
Indices: 8169--8215 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8159 TTAATTTATT
*
8169 AAAATTTTATAAAATTATCAT
1 AAAATTTTATAAAATTATCAC
* * *
8190 TAAATTTTATCAAATTATTAC
1 AAAATTTTATAAAATTATCAC
8211 AAAAT
1 AAAAT
8216 GATCAATAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAATTTTATAAAATTATCAC
Found at i:8226 original size:32 final size:32
Alignment explanation
Indices: 8145--8227 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 32
8135 CTTTTAAAAG
*
8145 TTACAAAATGAT-AATTAA-TTTATTAAAATT
1 TTACAAAATGATCAATAAATTTTATTAAAATT
* * * *
8175 TTATAAAATTATCATTAAATTTTA-TCAAATT
1 TTACAAAATGATCAATAAATTTTATTAAAATT
8206 ATTACAAAATGATCAATAAATT
1 -TTACAAAATGATCAATAAATT
8228 ACAATGTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 10 0.24
31 10 0.24
32 22 0.52
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (32 bp):
TTACAAAATGATCAATAAATTTTATTAAAATT
Found at i:11140 original size:21 final size:20
Alignment explanation
Indices: 11091--11141 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
11081 TAATGTTATT
*
11091 TAATATTATCAAATACAATC
1 TAATATTATAAAATACAATC
* * *
11111 TAAAATTATAAAATATATTC
1 TAATATTATAAAATACAATC
11131 ATAATATTATA
1 -TAATATTATA
11142 TTTTAAAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
TAATATTATAAAATACAATC
Found at i:12364 original size:27 final size:27
Alignment explanation
Indices: 12277--12354 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
12267 ACTTTGGTTG
*
12277 GGTAAAATTATGAAAATACCCTTATGA
1 GGTAAAATTATAAAAATACCCTTATGA
* * *
12304 GGTAAAATTACAAAAGTACCCTTATGG
1 GGTAAAATTATAAAAATACCCTTATGA
12331 GGTAAAATTATAAAAATACCCTTA
1 GGTAAAATTATAAAAATACCCTTA
12355 AGTTGTAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.28
Consensus pattern (27 bp):
GGTAAAATTATAAAAATACCCTTATGA
Found at i:14007 original size:32 final size:32
Alignment explanation
Indices: 13971--14040 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
13961 AAGGTGACCT
*
13971 TTGGGTAGGC-TTCGAGGCCCCGAGAAACTTTC
1 TTGGGTAGGCTTTC-AGGCCCCAAGAAACTTTC
* **
14003 TTGGGTAGGCTTTCATGCCCCAAGGCACTTTC
1 TTGGGTAGGCTTTCAGGCCCCAAGAAACTTTC
14035 TTGGGT
1 TTGGGT
14041 TAATCATGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 30 0.91
33 3 0.09
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.30
Consensus pattern (32 bp):
TTGGGTAGGCTTTCAGGCCCCAAGAAACTTTC
Found at i:17809 original size:3 final size:3
Alignment explanation
Indices: 17801--17826 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
17791 GCTTATTTAC
17801 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
17827 ATGACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18205 original size:32 final size:32
Alignment explanation
Indices: 18124--18206 Score: 84
Period size: 32 Copynumber: 2.7 Consensus size: 32
18114 CTTTTAAAAG
*
18124 TTACAAAATGAT-AATTAA-TTTATTAAAATT
1 TTACAAAATGATCAATAAATTTTATTAAAATT
* * *
18154 TTATAAAA-GTATCATTAAATTTTA-TCAAATT
1 TTACAAAATG-ATCAATAAATTTTATTAAAATT
18185 ATTACAAAATGATCAATAAATT
1 -TTACAAAATGATCAATAAATT
18207 GCAATGTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 1 0.02
30 9 0.21
31 10 0.24
32 21 0.50
33 1 0.02
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (32 bp):
TTACAAAATGATCAATAAATTTTATTAAAATT
Found at i:20750 original size:12 final size:12
Alignment explanation
Indices: 20733--20757 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20723 ACAAAGCACC
20733 ATTTGGTGCCTA
1 ATTTGGTGCCTA
20745 ATTTGGTGCCTA
1 ATTTGGTGCCTA
20757 A
1 A
20758 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:26226 original size:21 final size:20
Alignment explanation
Indices: 26177--26227 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
26167 TAATGTTATT
*
26177 TAATATTATCAAATACAATC
1 TAATATTATAAAATACAATC
* * *
26197 TAAAATTATAAAATATATTC
1 TAATATTATAAAATACAATC
26217 ATAATATTATA
1 -TAATATTATA
26228 TTTTAAAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
TAATATTATAAAATACAATC
Found at i:27393 original size:27 final size:27
Alignment explanation
Indices: 27363--27440 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
27353 ACTTAGGTTG
*
27363 GGTAAAATTATGAAAATACCCTTATGA
1 GGTAAAATTATAAAAATACCCTTATGA
* * *
27390 GGTAAAATTACAAAAATATCCTTATGG
1 GGTAAAATTATAAAAATACCCTTATGA
27417 GGTAAAATTATAAAAATACCCTTA
1 GGTAAAATTATAAAAATACCCTTA
27441 AGTTGTAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (27 bp):
GGTAAAATTATAAAAATACCCTTATGA
Found at i:27448 original size:27 final size:27
Alignment explanation
Indices: 27363--27450 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
27353 ACTTAGGTTG
* *
27363 GGTAAAATTATGAAAATACCCTTATGA
1 GGTAAAATTATAAAAATACCCTTATGT
* * *
27390 GGTAAAATTACAAAAATATCCTTATGG
1 GGTAAAATTATAAAAATACCCTTATGT
*
27417 GGTAAAATTATAAAAATACCCTTAAGT
1 GGTAAAATTATAAAAATACCCTTATGT
*
27444 TGTAAAA
1 GGTAAAA
27451 ATGGTATGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.30
Consensus pattern (27 bp):
GGTAAAATTATAAAAATACCCTTATGT
Found at i:29093 original size:32 final size:32
Alignment explanation
Indices: 29057--29126 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
29047 AAGGTGACCT
*
29057 TTGGGTAGGC-TTCGAGGCCCCGAGAAACTTTC
1 TTGGGTAGGCTTTC-AGGCCCCAAGAAACTTTC
* **
29089 TTGGGTAGGCTTTCATGCCCCAAGGCACTTTC
1 TTGGGTAGGCTTTCAGGCCCCAAGAAACTTTC
29121 TTGGGT
1 TTGGGT
29127 TAATCATGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 30 0.91
33 3 0.09
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.30
Consensus pattern (32 bp):
TTGGGTAGGCTTTCAGGCCCCAAGAAACTTTC
Found at i:35185 original size:40 final size:39
Alignment explanation
Indices: 35014--35206 Score: 163
Period size: 39 Copynumber: 4.9 Consensus size: 39
35004 CCTGTACACC
* * * * *
35014 CAGTAAGGGCTTACCCTGTGCAGAAAGTAGAGGAGTCTG
1 CAGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
* * * ** * **
35053 CGGCAAGGTCTTATTCT-ATGTACAAAATAGAGGAGCCTG
1 CAGTAAGGACTTACCCTGA-GCACAAAGCAGAGGAGCCTG
* * * *
35092 CAGTAAGGTCTTATCCTGTGCACAAAGCAGAGGAGCATG
1 CAGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
* * *
35131 CAGTAAAGATTTACCCTGAGCACATAAGCTGAGGAGCCTG
1 CAGTAAGGACTTACCCTGAGCACA-AAGCAGAGGAGCCTG
* *
35171 CGGTAAGGACTTACCCTGAGCACAAAGCCGAGGAGC
1 CAGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGC
35207 ATGTGGAAAG
Statistics
Matches: 122, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
39 88 0.72
40 34 0.28
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (39 bp):
CAGTAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
Found at i:41260 original size:2 final size:2
Alignment explanation
Indices: 41253--41282 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
41243 AATCAAATTC
41253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41283 TTTGGTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43546 original size:3 final size:3
Alignment explanation
Indices: 43538--43577 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
43528 CAGTCAGACA
43538 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
43578 TTGGATTCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:44031 original size:29 final size:30
Alignment explanation
Indices: 43985--44050 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
43975 AATATTAGAT
* *
43985 TATTTAAGAAAAATATAAAGATTTATTAGG
1 TATTTAAGAAAAACATAAAGACTTATTAGG
44015 TATTTAA-AAAAACATAAAGACTTATTAGG
1 TATTTAAGAAAAACATAAAGACTTATTAGG
44044 TATTTAA
1 TATTTAA
44051 CAAGCGACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 27 0.79
30 7 0.21
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (30 bp):
TATTTAAGAAAAACATAAAGACTTATTAGG
Found at i:51084 original size:4 final size:4
Alignment explanation
Indices: 51077--51109 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
51067 ACCAATGCAT
51077 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
51110 CTTAGTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:60572 original size:21 final size:22
Alignment explanation
Indices: 60528--60578 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
60518 AAACAAATTT
*
60528 TATATAAATCAAAATTTACATAA
1 TATATATATCAAAATTTA-ATAA
*
60551 TATATATATCAAAATTT-TTAA
1 TATATATATCAAAATTTAATAA
60572 TATATAT
1 TATATAT
60579 TTATTATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 10 0.38
23 16 0.62
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATATATCAAAATTTAATAA
Found at i:60919 original size:19 final size:18
Alignment explanation
Indices: 60892--60947 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
60882 CGATAAACCG
60892 AACCGAACCGAATCGAAA
1 AACCGAACCGAATCGAAA
* **
60910 AACTCGAACCG-TTAAAAA
1 AAC-CGAACCGAATCGAAA
*
60928 AACCGAACCGAACCGAAA
1 AACCGAACCGAATCGAAA
60946 AA
1 AA
60948 ACCAGTTTCG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 7 0.24
18 15 0.52
19 7 0.24
ACGTcount: A:0.52, C:0.27, G:0.14, T:0.07
Consensus pattern (18 bp):
AACCGAACCGAATCGAAA
Found at i:87616 original size:2 final size:2
Alignment explanation
Indices: 87609--87639 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
87599 TTGAATATTA
87609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87640 GATTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:88769 original size:2 final size:2
Alignment explanation
Indices: 88762--88786 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
88752 CAATTATAAC
88762 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
88787 GGTAAGGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:96970 original size:13 final size:13
Alignment explanation
Indices: 96943--96981 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
96933 ATTTCAGTAG
**
96943 TTGATTTGACCAA
1 TTGATTTGATTAA
96956 TTGATTTGATTAA
1 TTGATTTGATTAA
*
96969 TTAATTTGATTAA
1 TTGATTTGATTAA
96982 CTGTTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (13 bp):
TTGATTTGATTAA
Found at i:104561 original size:20 final size:20
Alignment explanation
Indices: 104536--104589 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
104526 TAATCCTATT
104536 CACTGGTAATCTTACATTCC
1 CACTGGTAATCTTACATTCC
104556 CACTGGTAATCTTACATTCC
1 CACTGGTAATCTTACATTCC
104576 CACTGGTAATCTTA
1 CACTGGTAATCTTA
104590 TATTTCGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (20 bp):
CACTGGTAATCTTACATTCC
Found at i:107825 original size:24 final size:20
Alignment explanation
Indices: 107779--107821 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
107769 AAGGTTTTAT
107779 CTGCCTGTAGTCATAGTGGA
1 CTGCCTGTAGTCATAGTGGA
107799 CTGCCTGTAGTCATAGTGGA
1 CTGCCTGTAGTCATAGTGGA
107819 CTG
1 CTG
107822 ACTGAAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (20 bp):
CTGCCTGTAGTCATAGTGGA
Found at i:124042 original size:31 final size:31
Alignment explanation
Indices: 124006--124084 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
123996 TTTTGATCGG
* *
124006 ATTTAAGGATCAAATTTATATTTTGTTTAAA
1 ATTTAAGGATCAAATTAATATTTTATTTAAA
* *
124037 ATTTAAGGGTTAAATTAATATTTTATTTAAA
1 ATTTAAGGATCAAATTAATATTTTATTTAAA
* * *
124068 GTTTAAAGATGAAATTA
1 ATTTAAGGATCAAATTA
124085 GAACTTAGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.46
Consensus pattern (31 bp):
ATTTAAGGATCAAATTAATATTTTATTTAAA
Found at i:124330 original size:145 final size:146
Alignment explanation
Indices: 124150--124446 Score: 569
Period size: 146 Copynumber: 2.0 Consensus size: 146
124140 CTTGATGATT
*
124150 AAAATAAATAAATTGTTAAAAATAGATGATTAAAACATATTTTTTATAT-AAAAAAAGAATGCTT
1 AAAATAAATAAATTGGTAAAAATAGATGATTAAAACATATTTTTTATATAAAAAAAAGAATGCTT
124214 AAAAAAGAATAAAACTGAAACAGAATGACTATTCTTATAGTTTAGAATTCAACGTAGTATAAAAA
66 AAAAAAGAATAAAACTGAAACAGAATGACTATTCTTATAGTTTAGAATTCAACGTAGTATAAAAA
124279 ATATAGTTTAGAATTG
131 ATATAGTTTAGAATTG
*
124295 AAAATAAATAAATTGGTAGAAATAGATGATTAAAACATATTTTTTATATAAAAAAAAGAATGCTT
1 AAAATAAATAAATTGGTAAAAATAGATGATTAAAACATATTTTTTATATAAAAAAAAGAATGCTT
124360 AAAAAAGAATAAAACTGAAACAGAATGACTATTCTTATAGTTTAGAATTCAACGTAGTATAAAAA
66 AAAAAAGAATAAAACTGAAACAGAATGACTATTCTTATAGTTTAGAATTCAACGTAGTATAAAAA
124425 ATATAGTTTAGAATTG
131 ATATAGTTTAGAATTG
124441 AAAATA
1 AAAATA
124447 TGAAAGAAGA
Statistics
Matches: 149, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
145 47 0.32
146 102 0.68
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.31
Consensus pattern (146 bp):
AAAATAAATAAATTGGTAAAAATAGATGATTAAAACATATTTTTTATATAAAAAAAAGAATGCTT
AAAAAAGAATAAAACTGAAACAGAATGACTATTCTTATAGTTTAGAATTCAACGTAGTATAAAAA
ATATAGTTTAGAATTG
Found at i:129646 original size:3 final size:3
Alignment explanation
Indices: 129638--129690 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
129628 ACTCAGTGAC
129638 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
129686 ATT AT
1 ATT AT
129691 CTTCTTTTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:130034 original size:28 final size:28
Alignment explanation
Indices: 129971--130041 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 28
129961 CCTAGTTTAA
* *
129971 TATAA-TAACCTTAGTGGTGATACACCT
1 TATAAGTAACCTTAGTCGCGATACACCT
* * * *
129998 CACATGTAACCTTAGTCGCGATACATCT
1 TATAAGTAACCTTAGTCGCGATACACCT
*
130026 TATAAGTAATCTTAGT
1 TATAAGTAACCTTAGT
130042 GTGGCACTAC
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (28 bp):
TATAAGTAACCTTAGTCGCGATACACCT
Found at i:135199 original size:28 final size:29
Alignment explanation
Indices: 135161--135215 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
135151 TTTTTTCCTT
135161 TATATATATATACA-TATTTTAAAACTACG
1 TATATATATATACAGT-TTTTAAAACTACG
*
135190 TATATA-ATATATAGTTTTTAAAACTA
1 TATATATATATACAGTTTTTAAAACTA
135216 TATAATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (29 bp):
TATATATATATACAGTTTTTAAAACTACG
Found at i:135238 original size:26 final size:24
Alignment explanation
Indices: 135163--135236 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
135153 TTTTCCTTTA
*
135163 TATATATATACATA-TTTTAAAACTAC
1 TATATA-ATATATAGTTTTAAAA--AC
*
135189 GTATATAATATATAGTTTTTAAAAC
1 -TATATAATATATAGTTTTAAAAAC
*
135214 TATATAATGTATAGTTTTAAAAA
1 TATATAATATATAGTTTTAAAAA
135237 AAACATTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 21 0.50
25 2 0.05
26 6 0.14
27 13 0.31
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (24 bp):
TATATAATATATAGTTTTAAAAAC
Found at i:135293 original size:25 final size:26
Alignment explanation
Indices: 135251--135299 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
135241 ATTTTAAAAA
135251 ATATATATAATATCATTTTGAAAACTT
1 ATATATATAATATCA-TTTGAAAACTT
135278 ATATATATAAT-T-ATTTGAAAAC
1 ATATATATAATATCATTTGAAAAC
135300 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 1 0.05
27 11 0.50
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (26 bp):
ATATATATAATATCATTTGAAAACTT
Found at i:135303 original size:35 final size:34
Alignment explanation
Indices: 135264--135338 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 34
135254 TATATAATAT
** *
135264 CATTTTGAAAACTTATATA-TATAATTATTTGAAAA
1 CATTTTGAAAACACATATATTAT-AGT-TTTGAAAA
135299 CATTTTTGAAAACACATATATTATAGTTTTGAAAA
1 CA-TTTTGAAAACACATATATTATAGTTTTGAAAA
135334 CATTT
1 CATTT
135339 ATATATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 3 0.09
35 12 0.34
36 17 0.49
37 3 0.09
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.43
Consensus pattern (34 bp):
CATTTTGAAAACACATATATTATAGTTTTGAAAA
Found at i:135332 original size:23 final size:24
Alignment explanation
Indices: 135302--135359 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
135292 TTGAAAACAT
135302 TTTTGAAAACA-CATATATTATAG
1 TTTTGAAAACATCATATATTATAG
*
135325 TTTTGAAAACATTTATATATTATAG
1 TTTTGAAAACA-TCATATATTATAG
*
135350 TTTTTAAAAC
1 TTTTGAAAAC
135360 GTTTTTGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 11 0.35
25 20 0.65
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (24 bp):
TTTTGAAAACATCATATATTATAG
Found at i:135466 original size:25 final size:28
Alignment explanation
Indices: 135434--135484 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
135424 AAAAAAAATA
135434 TTTTG-AAA-ATTTATATAT-TATATGT
1 TTTTGAAAATATTTATATATATATATGT
135459 TTTTGAAAATATTTATATATATATAT
1 TTTTGAAAATATTTATATATATATAT
135485 ATATATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.22
26 3 0.13
27 10 0.43
28 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (28 bp):
TTTTGAAAATATTTATATATATATATGT
Found at i:135496 original size:3 final size:3
Alignment explanation
Indices: 135488--135529 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
135478 TATATATATA
135488 TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
135530 ATTTTTAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:138498 original size:18 final size:19
Alignment explanation
Indices: 138477--138521 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
138467 ATTTAGACAT
138477 TTTGCATTTT-TTATTTTC
1 TTTGCATTTTGTTATTTTC
138495 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTGTTATTTTC
138514 TTTGCATT
1 TTTGCATT
138522 CACATTAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.69
Consensus pattern (19 bp):
TTTGCATTTTGTTATTTTC
Found at i:142275 original size:164 final size:164
Alignment explanation
Indices: 141941--142647 Score: 723
Period size: 164 Copynumber: 4.3 Consensus size: 164
141931 TATTTGCCAA
* * *
141941 CCAAAGACCTTCGAGTTCGATTACGCTCAGCTCAAAGGCACATCATTTGCAGCATAGCTTAAGTC
1 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTC
* *
142006 GAGAAGGGCTATCTG--TCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATT
66 GAGAAGGGCTATCTGCCTCAAAGACCCCCGAGTTCGACTACACTCAGCTTCAAGGGCATATCATT
*
142069 CACAGCATAAATCAAGTCTAGAAGGGTTATCTGTC
131 CACAGCATAACTCAAGTCTAGAAGGGTTATCTG-C
* * *
142104 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAAT
1 -CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGT
* * * * * *** * * * *
142169 CTAGGAGGGTTGTCTGCCAATAAAAGACCTTTGAGTTCGACTACGCTCGGCTT-AACGGCACATC
65 CGAGAAGGGCTATCTGCC--TCAAAGACCCCCGAGTTCGACTACACTCAGCTTCAAGGGCATATC
** * * * * *
142233 ATTTGCAGCATATCTTAAGTCGAGAAGAGCTATCTG-
128 ATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGC
** * * * * * ** *
142269 CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTCACAGCATAACTCAAGT
1 CCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGT
* * * ** * *
142334 CTAGAATGGTTATCTGTCAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCATATC
65 CGAGAAGGGCTATCTG-C-CTCAAAGACCCCCGAGTTCGACTACACTCAGCTTCAAGGGCATATC
** * * * *
142397 ATTTGCATCACAACTTAAGTCTAGAAGGGTTGT-TGC
128 ATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGC
* *
142433 CAACAAAAGACCTTTGAGTTCGACTACGCTCAGCT-CAACGGCACATCATTTGCAGCATAGCTTA
1 C--C-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTA
* * *
142497 AGTCGAGAAGAGCTATCTG-C-CAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATAT
62 AGTCGAGAAGGGCTATCTGCCTCAAAGACCCCCGAGTTCGACTACACTCAGCTTCAAGGGCATAT
142560 CATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTC
127 CATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTG-C
142599 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 -CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
142648 TCAACATATC
Statistics
Matches: 442, Mismatches: 83, Indels: 36
0.79 0.15 0.06
Matches are distributed among these distances:
163 32 0.07
164 235 0.53
165 48 0.11
166 39 0.09
167 62 0.14
168 26 0.06
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (164 bp):
CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTC
GAGAAGGGCTATCTGCCTCAAAGACCCCCGAGTTCGACTACACTCAGCTTCAAGGGCATATCATT
CACAGCATAACTCAAGTCTAGAAGGGTTATCTGC
Found at i:142574 original size:247 final size:247
Alignment explanation
Indices: 141934--142647 Score: 1275
Period size: 248 Copynumber: 2.9 Consensus size: 247
141924 AAAGGGCTAT
* * * *
141934 TTGCCAACCAAAGACCTTCGAGTTCGATTACGCTCAGCTCAAAGGCACATCATTTGCAGCATAGC
1 TTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCATTTGCAGCATAGC
* *
141999 TTAAGTCGAGAAGGGCTATCTGTCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATA
66 TTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATA
*
142064 TCATTCACAGCATAAATCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTAC
131 TCATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTAC
*
142129 GCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAATCTAGGAGGGTTG
196 GCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAATCTAGAAGGGTTG
* * * *
142181 TCTGCCAATAAAAGACCTTTGAGTTCGACTACGCTCGGCTTAACGGCACATCATTTGCAGCATAT
1 T-TGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCATTTGCAGCATAG
142246 CTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCAT
65 CTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCAT
*
142311 ATCATTCACAGCATAACTCAAGTCTAGAATGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTA
130 ATCATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTA
* *
142376 CGCTCAGCTCCAAGGCATATCATTTGCATCACAACTTAAGTCTAGAAGGGTTG
195 CGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAATCTAGAAGGGTTG
142429 TTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCATTTGCAGCATAGC
1 TTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCATTTGCAGCATAGC
142494 TTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATA
66 TTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATA
142559 TCATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTAC
131 TCATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTAC
*
142624 GCTCAGCTCCAAGGCACATCATTT
196 GCTCAGCTCCAAGGCATATCATTT
142648 TCAACATATC
Statistics
Matches: 445, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
247 213 0.48
248 232 0.52
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (247 bp):
TTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCATTTGCAGCATAGC
TTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATA
TCATTCACAGCATAACTCAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAATCTAGAAGGGTTG
Found at i:143312 original size:39 final size:40
Alignment explanation
Indices: 143269--143355 Score: 115
Period size: 39 Copynumber: 2.2 Consensus size: 40
143259 ATGTATAGTT
143269 TTTTTAAAAAACATTTT-AAAAAATATATATAATATATAA
1 TTTTTAAAAAACATTTTGAAAAAATATATATAATATATAA
* ** * *
143308 TTTTT-AAAATCATTTTGAAAACTTATATATTATATATAT
1 TTTTTAAAAAACATTTTGAAAAAATATATATAATATATAA
143347 TTTTTAAAA
1 TTTTTAAAA
143356 TGTTTTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 10 0.24
39 28 0.68
40 3 0.07
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47
Consensus pattern (40 bp):
TTTTTAAAAAACATTTTGAAAAAATATATATAATATATAA
Found at i:143356 original size:39 final size:38
Alignment explanation
Indices: 143219--143543 Score: 179
Period size: 38 Copynumber: 8.8 Consensus size: 38
143209 TAAAACTACG
* *
143219 TATATA-ATATATAGTTTTT--AAT-AGTTTTTAAAACT
1 TATATATATATATATTTTTTAAAATCA-TTTTGAAAACT
* * **
143254 ATATA-ATGTATAGT-TTTTTTAAAAAACATTTT-AAAAAA
1 -TATATATATATA-TATTTTTT-AAAATCATTTTGAAAACT
*
143292 TATATATAATATATAATTTTTAAAATCATTTTGAAAACT
1 TATATAT-ATATATATTTTTTAAAATCATTTTGAAAACT
** *
143331 TATATATTATATATATTTTTTAAAATGTTTTTTTTAAAAC-
1 TATATA-TATATATATTTTTTAAAA--TCATTTTGAAAACT
* * *
143371 TATACAT-TATATAGTTTTGAAAA-CATTTTGAAAACAT
1 TATATATATATATATTTTTTAAAATCATTTTGAAAAC-T
* **
143408 T-TATATATTATATAGTTTTTAAAATGTTTTTGAAAAC-
1 TATATATA-TATATATTTTTTAAAATCATTTTGAAAACT
* *
143445 --T-TATATA-ATATTTTTGAAAA-CATGTTGAAAACAT
1 TATATATATATATATTTTTTAAAATCATTTTGAAAAC-T
* * * *
143479 TCATATAT-TATATA-GTTTAAAAAACATTTTGAAAATT
1 T-ATATATATATATATTTTTTAAAATCATTTTGAAAACT
* *
143516 TATATAT-TATATGTTTTTGAAAAT-ATTT
1 TATATATATATATATTTTTTAAAATCATTT
143544 ATGTATATAT
Statistics
Matches: 225, Mismatches: 37, Indels: 54
0.71 0.12 0.17
Matches are distributed among these distances:
32 9 0.04
33 11 0.05
34 2 0.01
35 14 0.06
36 33 0.15
37 25 0.11
38 62 0.28
39 52 0.23
40 7 0.03
41 10 0.04
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (38 bp):
TATATATATATATATTTTTTAAAATCATTTTGAAAACT
Found at i:143401 original size:11 final size:11
Alignment explanation
Indices: 143385--143409 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
143375 CATTATATAG
143385 TTTTGAAAACA
1 TTTTGAAAACA
143396 TTTTGAAAACA
1 TTTTGAAAACA
143407 TTT
1 TTT
143410 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (11 bp):
TTTTGAAAACA
Found at i:143473 original size:71 final size:75
Alignment explanation
Indices: 143301--143496 Score: 244
Period size: 71 Copynumber: 2.6 Consensus size: 75
143291 ATATATATAA
*
143301 TATATAATTTTT-AAAATCATTTTGAAAAC--TTATATATTATATATATTTTTTAAAATGTTTTT
1 TATAT-ATTTTTGAAAA-CATTTTGAAAACATTTATATA-T-TATATAGTTTTTAAAATG-TTTT
*
143363 TTTAAAACTATACAT
61 TTGAAAACTATACAT
*
143378 TATATAGTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAATG-TTTTTGAA
1 TATATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAATGTTTTTTGAA
*
143442 AACT-TATA-
66 AACTATACAT
* *
143450 TA-ATATTTTTGAAAACATGTTGAAAACATTCATATATTATATAGTTT
1 TATATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTT
143497 AAAAAACATT
Statistics
Matches: 109, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
71 42 0.39
72 2 0.02
73 3 0.03
74 11 0.10
76 34 0.31
77 10 0.09
78 7 0.06
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.48
Consensus pattern (75 bp):
TATATATTTTTGAAAACATTTTGAAAACATTTATATATTATATAGTTTTTAAAATGTTTTTTGAA
AACTATACAT
Found at i:143543 original size:27 final size:26
Alignment explanation
Indices: 143505--143555 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
143495 TTAAAAAACA
143505 TTTTGAAAATTTATATAT-TATATGT
1 TTTTGAAAATTTATATATATATATGT
*
143530 TTTTGAAAATATTTATGTATATATAT
1 TTTTG-AAA-ATTTATATATATATAT
143556 ATTATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 3 0.14
27 9 0.41
28 5 0.23
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (26 bp):
TTTTGAAAATTTATATATATATATGT
Found at i:153865 original size:472 final size:468
Alignment explanation
Indices: 152965--153907 Score: 1666
Period size: 472 Copynumber: 2.0 Consensus size: 468
152955 TTTATTTTTG
152965 TTTTTTGATTTCTTAAAAATCTCAGCAGCTTGGCCATCAAAATCTGATATAGATTTGTAGGATCT
1 TTTTTTGATTTCTTAAAAATCTCAGCAGCTTGGCCATCAAAATCTGATATAGATTTGTAGGATCT
*
153030 AGGCAACTGTTTAGAGATTCAAAACCTTGCTCTTTTTTTTTTGGCTCAACACTAATTAAAGTAGA
66 AGGCAACTGTTTAGAGATTCAAAACCTAGCTCTTTTTTTTTTGGCTCAACACTAATTAAAGTAGA
153095 AACAATAAGGCTACATTATACCATACAGAGATGGAACGAGAGGGGACGAGTGGTATAGAGATGGA
131 AACAATAAGGCTACATTATACCATACAGAGATGGAAC-AGAGGGGACGAGTGGTATAGAGATGGA
153160 GTGAGAGGGATCAGTGGGGCGATCATTTCCTAAAAATTTTAAATTTTATATATTTTAGATATTTT
195 GTGAGAGGGATCAGTGGGGCGATCATTTCCTAAAAATTTTAAATTTTATATATTTTAGA-ATTTT
153225 TTGTATTTTATATTGAAATTTGTTTTGGTACCTTAAAATTTATATTATCTCTACTTAAAATTTTT
259 TTGTATTTTATATTGAAATTTGTTTTGGTACCTTAAAATTTATATTATCTCTACTTAAAATTTTT
*
153290 ATATTTTTTGTATTTTAAGGAGCAAGATTTTATCAAAAAATTTTAAAACTGAGGACCAAAGCTTT
324 ATATTTTTTGTATTTTAAGGAGCAAGATTTTATCAAAAAATTTTAAAAATGAGGACCAAAGCTTT
* *
153355 ACCAATACTTTCTTCTGGTTCCCGCAAATAAGGGAAATTTGGGAAACGATTCGATTCAAAGGGCA
389 ACCAATACTTTCTTCTCGTTCCCGCAAATAAGGGAAATTTGGGAAACGATTCGACTCAAAGGGCA
153420 TAAAGTTT-TTGGCA
454 TAAAGTTTCTTGGCA
153434 TTTTTTGATTTCTTAAAAATCTCAGCAGCTTGGCCCATCAAAATCTGATATAGATTTGTAGGATC
1 TTTTTTGATTTCTTAAAAATCTCAGCAGCTTGG-CCATCAAAATCTGATATAGATTTGTAGGATC
*
153499 TAGGCAACTGTTTAGAGATTC-AAACACTAGCTCTTTTTTTTTTTTTGGCTTAACACTAATTAAA
65 TAGGCAACTGTTTAGAGATTCAAAAC-CTAGCTC---TTTTTTTTTTGGCTCAACACTAATTAAA
153563 GTAGAAACAATAAGGCTACATTATACCATACAGAGATGGAAC-GAGGGGACGAGTGGTATAGAGA
126 GTAGAAACAATAAGGCTACATTATACCATACAGAGATGGAACAGAGGGGACGAGTGGTATAGAGA
153627 TGGAGTGAGAGGGGATCAGTGGGGCGATCATTTCCTAAAAA-TTTAAATTTT-TATATTTTAG-A
191 TGGAGTGAGA-GGGATCAGTGGGGCGATCATTTCCTAAAAATTTTAAATTTTATATATTTTAGAA
153689 TTTTTTGTA-TTTATATTGAAAATTTGTTTTGGTACCTTAAAATTTTATAAGTTATCTCTACTTA
255 TTTTTTGTATTTTATATTG-AAATTTGTTTTGGTACCTTAAAA-TTTAT-A-TTATCTCTACTTA
153753 AAATTTTTATATTTTTTGTATTTTAAGGAGCAAGATTTTATCAAAAGAATTTTAAAAATGAGGAC
316 AAATTTTTATATTTTTTGTATTTTAAGGAGCAAGATTTTATCAAAA-AATTTTAAAAATGAGGAC
*
153818 CAAAGCTTTACCAATACTTTCTTCTCGTTCCCGTAAATAAGGGAAATTTGGGAAACGATTCGACT
380 CAAAGCTTTACCAATACTTTCTTCTCGTTCCCGCAAATAAGGGAAATTTGGGAAACGATTCGACT
153883 CAAAGGGCATAAAGTTTCTTGGCA
445 CAAAGGGCATAAAGTTTCTTGGCA
153907 T
1 T
153908 AAGCTTATAT
Statistics
Matches: 456, Mismatches: 6, Indels: 20
0.95 0.01 0.04
Matches are distributed among these distances:
467 9 0.02
468 33 0.07
469 42 0.09
470 69 0.15
471 101 0.22
472 126 0.28
473 76 0.17
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.37
Consensus pattern (468 bp):
TTTTTTGATTTCTTAAAAATCTCAGCAGCTTGGCCATCAAAATCTGATATAGATTTGTAGGATCT
AGGCAACTGTTTAGAGATTCAAAACCTAGCTCTTTTTTTTTTGGCTCAACACTAATTAAAGTAGA
AACAATAAGGCTACATTATACCATACAGAGATGGAACAGAGGGGACGAGTGGTATAGAGATGGAG
TGAGAGGGATCAGTGGGGCGATCATTTCCTAAAAATTTTAAATTTTATATATTTTAGAATTTTTT
GTATTTTATATTGAAATTTGTTTTGGTACCTTAAAATTTATATTATCTCTACTTAAAATTTTTAT
ATTTTTTGTATTTTAAGGAGCAAGATTTTATCAAAAAATTTTAAAAATGAGGACCAAAGCTTTAC
CAATACTTTCTTCTCGTTCCCGCAAATAAGGGAAATTTGGGAAACGATTCGACTCAAAGGGCATA
AAGTTTCTTGGCA
Found at i:155345 original size:17 final size:17
Alignment explanation
Indices: 155300--155345 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
155290 GATTATAATT
155300 TATTTATTTTATTAAAA
1 TATTTATTTTATTAAAA
* *
155317 TAATTATATTTTATTGATA
1 T-ATT-TATTTTATTAAAA
155336 TATTTATTTT
1 TATTTATTTT
155346 TTCTAACGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 7 0.28
18 6 0.24
19 12 0.48
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATTTATTTTATTAAAA
Found at i:161044 original size:25 final size:25
Alignment explanation
Indices: 161007--161063 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
160997 CAACCGAATA
161007 TAAATTCTGCCATCATACC-AATTGC
1 TAAATT-TGCCATCATACCGAATTGC
*
161032 TAAATTTGCCCATTATACCGAATTGC
1 TAAATTTG-CCATCATACCGAATTGC
161058 -AAATTT
1 TAAATTT
161064 TGGAGCAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 2 0.07
25 21 0.72
26 6 0.21
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (25 bp):
TAAATTTGCCATCATACCGAATTGC
Found at i:163828 original size:2 final size:2
Alignment explanation
Indices: 163821--163858 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
163811 AGTGGTTCTT
163821 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
163859 AACCATTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:165954 original size:15 final size:15
Alignment explanation
Indices: 165934--165970 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
165924 TTTTAAGTTC
165934 AGGAATGGCTTAAAT
1 AGGAATGGCTTAAAT
165949 AGGAATGGCTTAAAT
1 AGGAATGGCTTAAAT
*
165964 AGAAATG
1 AGGAATG
165971 ACGAGTGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.24
Consensus pattern (15 bp):
AGGAATGGCTTAAAT
Found at i:166745 original size:2 final size:2
Alignment explanation
Indices: 166738--166768 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
166728 TTAATTAGGA
166738 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
166769 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:175537 original size:2 final size:2
Alignment explanation
Indices: 175530--175554 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
175520 ATAATTGATA
175530 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
175555 ATTTATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:176071 original size:17 final size:17
Alignment explanation
Indices: 176051--176083 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
176041 ATAATATTTT
*
176051 ATTTTAATTAATTTATC
1 ATTTTAACTAATTTATC
176068 ATTTTAACTAATTTAT
1 ATTTTAACTAATTTAT
176084 AATTATGCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTAACTAATTTATC
Found at i:180077 original size:48 final size:47
Alignment explanation
Indices: 180015--180135 Score: 138
Period size: 48 Copynumber: 2.5 Consensus size: 47
180005 TTTGGGCTAT
*
180015 TTTTTAGTTCGGGTTACTTTTGATTC-AGATTAATTTCGGTTCGAG-TTG
1 TTTTCAGTTCGGGTTA-TTTTGATTCGAG-TTAATTTCGGTTCG-GCTTG
*
180063 TTTTCAGTTCGGGTTAATTTCGATTCGAGTTAATTTCGGTTCGGCTTG
1 TTTTCAGTTCGGGTT-ATTTTGATTCGAGTTAATTTCGGTTCGGCTTG
* * *
180111 CTTTCATTTTGGGTTATTTTCGATT
1 TTTTCAGTTCGGGTTATTTT-GATT
180136 GGGGTCAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
47 5 0.08
48 55 0.87
49 3 0.05
ACGTcount: A:0.15, C:0.12, G:0.22, T:0.50
Consensus pattern (47 bp):
TTTTCAGTTCGGGTTATTTTGATTCGAGTTAATTTCGGTTCGGCTTG
Found at i:180083 original size:16 final size:16
Alignment explanation
Indices: 180044--180105 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
180034 TTGATTCAGA
180044 TTAATTTCGGTTCGAG
1 TTAATTTCGGTTCGAG
** * *
180060 TTGTTTTCAGTTCGGG
1 TTAATTTCGGTTCGAG
*
180076 TTAATTTCGATTCGAG
1 TTAATTTCGGTTCGAG
180092 TTAATTTCGGTTCG
1 TTAATTTCGGTTCG
180106 GCTTGCTTTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.47
Consensus pattern (16 bp):
TTAATTTCGGTTCGAG
Found at i:180105 original size:32 final size:32
Alignment explanation
Indices: 180044--180106 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
180034 TTGATTCAGA
* **
180044 TTAATTTCGGTTCGAGTTGTTTTCAGTTCGGG
1 TTAATTTCGATTCGAGTTAATTTCAGTTCGGG
*
180076 TTAATTTCGATTCGAGTTAATTTCGGTTCGG
1 TTAATTTCGATTCGAGTTAATTTCAGTTCGG
180107 CTTGCTTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.16, C:0.13, G:0.25, T:0.46
Consensus pattern (32 bp):
TTAATTTCGATTCGAGTTAATTTCAGTTCGGG
Found at i:182998 original size:2 final size:2
Alignment explanation
Indices: 182991--183019 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
182981 TTTAAGATGG
182991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
183020 GTGTTTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:183575 original size:4 final size:4
Alignment explanation
Indices: 183566--183598 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
183556 TTCATAAACT
*
183566 TATG TATG TATA TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
183599 GCAGATGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:187552 original size:3 final size:3
Alignment explanation
Indices: 187544--187571 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
187534 TCTATATCTA
187544 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
187572 TACAAACCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:187688 original size:24 final size:23
Alignment explanation
Indices: 187661--187707 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
187651 CAAACAGGCC
187661 CCAACCTAAAACCCGACCCAAAAT
1 CCAA-CTAAAACCCGACCCAAAAT
* * *
187685 CCAACTAGAATCCGACCCGAAAT
1 CCAACTAAAACCCGACCCAAAAT
187708 AATATTGGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.43, C:0.38, G:0.09, T:0.11
Consensus pattern (23 bp):
CCAACTAAAACCCGACCCAAAAT
Found at i:189505 original size:21 final size:21
Alignment explanation
Indices: 189479--189565 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 21
189469 GCGTTGCATT
189479 TCGCGTTGCGATAATTGAAAA
1 TCGCGTTGCGATAATTGAAAA
189500 TCGCGTTGCGATAGA-TGAAAA
1 TCGCGTTGCGATA-ATTGAAAA
* * * ** **
189521 TTGTGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAATTGAAAA
*
189541 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAATTGAAAA
189562 TCGC
1 TCGC
189566 AACGCGAAAT
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
20 12 0.24
21 36 0.73
22 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (21 bp):
TCGCGTTGCGATAATTGAAAA
Found at i:189582 original size:20 final size:20
Alignment explanation
Indices: 189557--189596 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
189547 TGCGATAGTT
189557 GAAAATCGCAACGCGAAATG
1 GAAAATCGCAACGCGAAATG
189577 GAAAATCGCAACGCGAAATG
1 GAAAATCGCAACGCGAAATG
189597 CAACGCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.25, T:0.10
Consensus pattern (20 bp):
GAAAATCGCAACGCGAAATG
Found at i:194182 original size:28 final size:28
Alignment explanation
Indices: 194139--194193 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
194129 CTTCTCATCT
194139 TCCTCCTCCATATCTCTCTTCTTCTTCC
1 TCCTCCTCCATATCTCTCTTCTTCTTCC
*
194167 TCCTCCTCCATGTCTCTCTTCTTCTTC
1 TCCTCCTCCATATCTCTCTTCTTCTTC
194194 ATCGAATGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.05, C:0.45, G:0.02, T:0.47
Consensus pattern (28 bp):
TCCTCCTCCATATCTCTCTTCTTCTTCC
Found at i:194921 original size:45 final size:45
Alignment explanation
Indices: 194871--194960 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
194861 ATCCAATGTG
* *
194871 ACTTTCGGTCCTGCAATTGCCGTGGGGGCCAATGAATTATCAATT
1 ACTTTCGGTCCTGAAATTGCCGTGGGAGCCAATGAATTATCAATT
* * * * *
194916 ACTTTCGGTGCTGAAATTGTCGTGGGATCCAATGCATTTTCAATT
1 ACTTTCGGTCCTGAAATTGCCGTGGGAGCCAATGAATTATCAATT
194961 GTTGCATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (45 bp):
ACTTTCGGTCCTGAAATTGCCGTGGGAGCCAATGAATTATCAATT
Found at i:196288 original size:18 final size:18
Alignment explanation
Indices: 196262--196296 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
196252 TCGAAAGGAC
*
196262 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
196280 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
196297 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:205893 original size:27 final size:26
Alignment explanation
Indices: 205860--205919 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
205850 AATTCATAAG
*
205860 CGGAAAAATAACTAACGCGATATTAT
1 CGGAAAAATAACTAACGCGATATTAA
*
205886 CGGAAAAATAACTAATGCGATATTAA
1 CGGAAAAATAACTAACGCGATATTAA
*
205912 CGTAAAAA
1 CGGAAAAA
205920 ATAAGACATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.22
Consensus pattern (26 bp):
CGGAAAAATAACTAACGCGATATTAA
Found at i:206403 original size:2 final size:2
Alignment explanation
Indices: 206396--206427 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
206386 GAAGAAGTGA
206396 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
206428 GATACTAGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:208876 original size:20 final size:19
Alignment explanation
Indices: 208851--208904 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
208841 CGCTGCTGGA
*
208851 AACCGGTTTGACTGGTTTT
1 AACCGGTTTGACCGGTTTT
208870 CAACCGGTTTGACCGGTTTT
1 -AACCGGTTTGACCGGTTTT
*
208890 -ACCGGTTTTACCGGT
1 AACCGGTTTGACCGGT
208905 CTGACCCGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 14 0.44
20 18 0.56
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTTT
Found at i:208884 original size:9 final size:9
Alignment explanation
Indices: 208852--208910 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
208842 GCTGCTGGAA
208852 ACCGGTTTG
1 ACCGGTTTG
* *
208861 ACTGGTTTTCA
1 ACCGG-TTT-G
208872 ACCGGTTTG
1 ACCGGTTTG
*
208881 ACCGGTTTT
1 ACCGGTTTG
*
208890 ACCGGTTTT
1 ACCGGTTTG
*
208899 ACCGGTCTG
1 ACCGGTTTG
208908 ACC
1 ACC
208911 CGACCCGATC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 31 0.76
10 6 0.15
11 4 0.10
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:210187 original size:26 final size:26
Alignment explanation
Indices: 210158--210211 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
210148 GTTTTTATTT
210158 TGCAAGTTGACTTTATTTTGGTGACA
1 TGCAAGTTGACTTTATTTTGGTGACA
*
210184 TGCAAGTTGATTTTATTTTGGTGACA
1 TGCAAGTTGACTTTATTTTGGTGACA
210210 TG
1 TG
210212 GACCTTATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.44
Consensus pattern (26 bp):
TGCAAGTTGACTTTATTTTGGTGACA
Found at i:211006 original size:21 final size:21
Alignment explanation
Indices: 210990--211043 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
210980 GCGTTGCATT
210990 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
211011 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
*
211032 TCGCATTGCGAT
1 TCGCGTTGCGAT
211044 TTTCCATTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:211122 original size:5 final size:6
Alignment explanation
Indices: 211084--211119 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
211074 AAGATAGTAT
211084 CCACGA CCACGA CCACGA CCACGA CC-CGA CC-CGA CC
1 CCACGA CCACGA CCACGA CCACGA CCACGA CCACGA CC
211120 CGAGACGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.28, C:0.56, G:0.17, T:0.00
Consensus pattern (6 bp):
CCACGA
Found at i:211645 original size:6 final size:6
Alignment explanation
Indices: 211614--211669 Score: 84
Period size: 6 Copynumber: 10.0 Consensus size: 6
211604 TCTCGTCTCG
211614 GGTCG- GGTCG- GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
211658 GGTCGT GGTCGT
1 GGTCGT GGTCGT
211670 ACGTGTCTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 20 0.40
6 30 0.60
ACGTcount: A:0.00, C:0.18, G:0.54, T:0.29
Consensus pattern (6 bp):
GGTCGT
Found at i:211823 original size:41 final size:41
Alignment explanation
Indices: 211760--212090 Score: 445
Period size: 41 Copynumber: 8.0 Consensus size: 41
211750 ACAACGAATT
* *
211760 TGGAAAATCGCAACGACAACTGT-AGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACG-CGACTTTCA-ACTATCGCAACGCGAAA
*
211802 TGGAAAATCGCAACGCGACTGT-AGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTTTCA-ACTATCGCAACGCGAAA
* *
211843 TGGAAAATCACAACGCGAATTTCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTTTCAACTATCGCAACGCGAAA
*
211884 TGGAAAATCGCAACGCGAATTTCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTTTCAACTATCGCAACGCGAAA
* *
211925 TGAAAAATCGCAACGCGACTGT-AGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTTTCA-ACTATCGCAACGCGAAA
* * *
211966 TGGAAAACCACAACGCGA-TCTCCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACT-TTCAACTATCGCAACGCGAAA
* *
212007 TGGAAAAACGCAACGCGATTTTCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGACTTTCAACTATCGCAACGCGAAA
* * *
212048 TGGAAAAACGCAACGCGATTTTCAACTATCGCAATGCGAAA
1 TGGAAAATCGCAACGCGACTTTCAACTATCGCAACGCGAAA
212089 TG
1 TG
212091 CAACGTGAAT
Statistics
Matches: 267, Mismatches: 17, Indels: 11
0.91 0.06 0.04
Matches are distributed among these distances:
40 2 0.01
41 247 0.93
42 18 0.07
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (41 bp):
TGGAAAATCGCAACGCGACTTTCAACTATCGCAACGCGAAA
Found at i:211962 original size:123 final size:123
Alignment explanation
Indices: 211760--212090 Score: 492
Period size: 123 Copynumber: 2.7 Consensus size: 123
211750 ACAACGAATT
* *
211760 TGGAAAATCGCAACGAC-AACTGT-AGACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTG
1 TGGAAAATCGCAACG-CGAA-TTTCA-ACTATCGCAACGCGAAATGAAAAATCGCAACGCGACTG
* *
211823 TAGACTATCGCAACGCGAAATGGAAAATCACAACGCGAAT-TTCAACTATCGCAACGCGAAA
63 TAGACTATCGCAACGCGAAATGGAAAACCACAACGCG-ATCTCCAACTATCGCAACGCGAAA
211884 TGGAAAATCGCAACGCGAATTTCAACTATCGCAACGCGAAATGAAAAATCGCAACGCGACTGTAG
1 TGGAAAATCGCAACGCGAATTTCAACTATCGCAACGCGAAATGAAAAATCGCAACGCGACTGTAG
211949 ACTATCGCAACGCGAAATGGAAAACCACAACGCGATCTCCAACTATCGCAACGCGAAA
66 ACTATCGCAACGCGAAATGGAAAACCACAACGCGATCTCCAACTATCGCAACGCGAAA
* * * *
212007 TGGAAAAACGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAAA-CGCAACGCGATTTTC
1 TGGAAAATCGCAACGCGAATTTCAACTATCGCAACGCGAAAT-GAAAAATCGCAACGCGACTGT-
*
212071 A-ACTATCGCAATGCGAAATG
64 AGACTATCGCAACGCGAAATG
212091 CAACGTGAAT
Statistics
Matches: 193, Mismatches: 9, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
122 2 0.01
123 166 0.86
124 25 0.13
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (123 bp):
TGGAAAATCGCAACGCGAATTTCAACTATCGCAACGCGAAATGAAAAATCGCAACGCGACTGTAG
ACTATCGCAACGCGAAATGGAAAACCACAACGCGATCTCCAACTATCGCAACGCGAAA
Found at i:212002 original size:21 final size:21
Alignment explanation
Indices: 211826--212086 Score: 74
Period size: 20 Copynumber: 12.7 Consensus size: 21
211816 GCGACTGTAG
* **
211826 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATATCCA
* * *
211847 A-AATCACAACGCGA-ATTTCA
1 ACTATCGCAACGCGATA-TCCA
* **
211867 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATATCCA
* *
211888 A-AATCGCAACGCGA-ATTTCA
1 ACTATCGCAACGCGATA-TCCA
* *
211908 ACTATCGCAACGCGAAAT-GA
1 ACTATCGCAACGCGATATCCA
** *
211928 AAAATCGCAACGCGACTGT--A
1 ACTATCGCAACGCGA-TATCCA
* **
211948 GACTATCGCAACGCGAAATGGA
1 -ACTATCGCAACGCGATATCCA
* * * *
211970 A-AACCACAACGCGATCTCCA
1 ACTATCGCAACGCGATATCCA
* **
211990 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATATCCA
* * * *
212011 A-AAACGCAACGCGATTTTCA
1 ACTATCGCAACGCGATATCCA
* **
212031 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGATATCCA
* * * *
212052 A-AAACGCAACGCGATTTTCA
1 ACTATCGCAACGCGATATCCA
*
212072 ACTATCGCAATGCGA
1 ACTATCGCAACGCGA
212087 AATGCAACGT
Statistics
Matches: 171, Mismatches: 56, Indels: 26
0.68 0.22 0.10
Matches are distributed among these distances:
19 2 0.01
20 86 0.50
21 80 0.47
22 3 0.02
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.16
Consensus pattern (21 bp):
ACTATCGCAACGCGATATCCA
Found at i:212439 original size:16 final size:17
Alignment explanation
Indices: 212418--212452 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
212408 TTTTCTAAAA
212418 ATTTT-AATTTTTTTAT
1 ATTTTAAATTTTTTTAT
212434 ATTTTAAATTTTTTTAT
1 ATTTTAAATTTTTTTAT
212451 AT
1 AT
212453 ATTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTAAATTTTTTTAT
Found at i:213968 original size:22 final size:22
Alignment explanation
Indices: 213956--213997 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
213946 TATATTTTAG
*
213956 TATGTATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
213978 TATGGATTGATTTATTTTAA
1 TATGGATTGATTTATTTTAA
213998 GAAAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:214060 original size:31 final size:31
Alignment explanation
Indices: 214023--214081 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
214013 AGTTGTATAG
214023 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATTTCAGTATTGTAAAACTAAA
214054 ATTATTTAAATTTCAGTATTGTAAAACT
1 ATTATTTAAATTTCAGTATTGTAAAACT
214082 CTTTTAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTGTAAAACTAAA
Found at i:215206 original size:22 final size:22
Alignment explanation
Indices: 215178--215231 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
215168 ATTAAGTCAT
215178 TATTTTTATTGAATAAAAATAA
1 TATTTTTATTGAATAAAAATAA
215200 TATTTTTATTGAATAAAAATAA
1 TATTTTTATTGAATAAAAATAA
215222 TATTTTTATT
1 TATTTTTATT
215232 ATTATTTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
TATTTTTATTGAATAAAAATAA
Found at i:222314 original size:8 final size:8
Alignment explanation
Indices: 222301--222341 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
222291 CTCATTTTCA
222301 GAGAATTT
1 GAGAATTT
222309 GAGAATTT
1 GAGAATTT
*
222317 -AGAGTTT
1 GAGAATTT
*
222324 GGGAATTT
1 GAGAATTT
222332 GAGAATTT
1 GAGAATTT
222340 GA
1 GA
222342 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:222640 original size:128 final size:128
Alignment explanation
Indices: 222412--223059 Score: 1145
Period size: 128 Copynumber: 5.1 Consensus size: 128
222402 TAATCGGAGT
*
222412 ACTATTCTCATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCA-AGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
222476 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
222539 ACTATTCACATGAAGGCGCGTTCCCGGGGGTGCGCCTTCTATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* *
222604 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTATCTATTATTTT
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
222667 ACTATTCACATGAAGGCGCATTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
222732 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
222795 ACTATTCACATGAATGCGCGTTCCCAGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
222860 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* * * * *
222923 ACTATTCACATGAAGGCTCGTTCTCGGTGGCACGCCTTCCATTATTTTCTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* * *
222988 CATTGCACTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTGCCCATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
223051 ACTATTCAC
1 ACTATTCAC
223060 CCCCCTCTTG
Statistics
Matches: 497, Mismatches: 23, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
127 49 0.10
128 448 0.90
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (128 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:223290 original size:34 final size:34
Alignment explanation
Indices: 223252--223352 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
223242 AAATTTAATG
* *
223252 TTAAATTTTGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
223286 TTAAATTTCGAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
223320 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
223353 AACATTTATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:223922 original size:21 final size:21
Alignment explanation
Indices: 223871--223922 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
223861 TATGGTATAA
*
223871 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
223892 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
223913 AACCCTGCGG
1 AACCCTGCGG
223923 AGATGGCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 22 0.79
22 3 0.11
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:223966 original size:21 final size:21
Alignment explanation
Indices: 223926--223967 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
223916 CCTGCGGAGA
*
223926 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
223947 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
223968 GGACATGTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.38, T:0.26
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:225740 original size:34 final size:31
Alignment explanation
Indices: 225697--225785 Score: 88
Period size: 34 Copynumber: 2.7 Consensus size: 31
225687 TTAATAATTC
*
225697 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTATATAAATA-TA--TTAA
* *
225731 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTATATAAATATATTAA
* * *
225762 TATAAAATATAATAACTATTTAAA
1 TA-AAAAAATAATAATTATATAAA
225786 AAAATACTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 6 0.13
32 16 0.35
33 2 0.04
34 22 0.48
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.39
Consensus pattern (31 bp):
TAAAAAAATAATAATTATATAAATATATTAA
Found at i:225762 original size:31 final size:33
Alignment explanation
Indices: 225697--225776 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
225687 TTAATAATTC
* *
225697 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTACATAAATATTA-TTTAA
*
225731 TAAAAAAATAATATTTACATAAATA-TA-TTAA
1 TAAAAAAATAATAATTACATAAATATTATTTAA
*
225762 TATAAAATATAATAA
1 TA-AAAAAATAATAA
225777 CTATTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 6 0.15
32 10 0.25
33 2 0.05
34 22 0.55
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
TAAAAAAATAATAATTACATAAATATTATTTAA
Found at i:241898 original size:16 final size:16
Alignment explanation
Indices: 241864--241902 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
241854 TTTATTTCAT
*
241864 AATGATT-AAACGCTG
1 AATGATTCAAACGATG
*
241879 AATGATTCAAATGATG
1 AATGATTCAAACGATG
241895 AATGATTC
1 AATGATTC
241903 GGAGGCTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (16 bp):
AATGATTCAAACGATG
Found at i:254178 original size:29 final size:30
Alignment explanation
Indices: 254142--254222 Score: 121
Period size: 29 Copynumber: 2.7 Consensus size: 30
254132 AACTAAATTG
254142 ATGTAAGCAATGACATCA-TTACTTAAATA
1 ATGTAAGCAATGACATCATTTACTTAAATA
*
254171 ATGTAAGCAATGACAT-ATTTACTTAAATG
1 ATGTAAGCAATGACATCATTTACTTAAATA
*
254200 ATGTAAGTAATGACATCAATTTA
1 ATGTAAGCAATGACATC-ATTTA
254223 GTTTGGGTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
28 1 0.02
29 41 0.87
31 5 0.11
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.33
Consensus pattern (30 bp):
ATGTAAGCAATGACATCATTTACTTAAATA
Found at i:258933 original size:29 final size:30
Alignment explanation
Indices: 258890--258977 Score: 144
Period size: 29 Copynumber: 2.9 Consensus size: 30
258880 CTCACCTAAC
258890 TAAATTGATGTAAGCAATGACATCA-TTACT
1 TAAA-TGATGTAAGCAATGACATCATTTACT
258920 TAAATGATGTAAGCAATGACAT-ATTTACT
1 TAAATGATGTAAGCAATGACATCATTTACT
258949 TAAATGATGTAAGCAATGACATCAATTTA
1 TAAATGATGTAAGCAATGACATC-ATTTA
258978 GTTTGGGTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
28 1 0.02
29 45 0.82
30 4 0.07
31 5 0.09
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (30 bp):
TAAATGATGTAAGCAATGACATCATTTACT
Found at i:271540 original size:27 final size:27
Alignment explanation
Indices: 271510--271572 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
271500 TCCATCCATT
271510 CCTATTCTAACACAGTCAGTGGCTGCA
1 CCTATTCTAACACAGTCAGTGGCTGCA
271537 CCTATTCTAACACAGTCAGTGGCTGCA
1 CCTATTCTAACACAGTCAGTGGCTGCA
271564 CCT-TTCTAA
1 CCTATTCTAA
271573 AAATCCCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (27 bp):
CCTATTCTAACACAGTCAGTGGCTGCA
Found at i:284401 original size:17 final size:18
Alignment explanation
Indices: 284376--284410 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
284366 TTACACCTTC
284376 TAAAATTTTA-ATAATTT
1 TAAAATTTTATATAATTT
*
284393 TAAATTTTTATATAATTT
1 TAAAATTTTATATAATTT
284411 AGATTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TAAAATTTTATATAATTT
Found at i:285350 original size:20 final size:20
Alignment explanation
Indices: 285325--285376 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
285315 TACTCCCTGG
285325 TAATCTTACA-TTCTCACAAA
1 TAATCTTACATTTC-CACAAA
* *
285345 TAATCTTACATTTCCACTAG
1 TAATCTTACATTTCCACAAA
285365 TAATCTTACATT
1 TAATCTTACATT
285377 ACAAGAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 26 0.90
21 3 0.10
ACGTcount: A:0.35, C:0.23, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATCTTACATTTCCACAAA
Found at i:285590 original size:6 final size:6
Alignment explanation
Indices: 285579--285603 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
285569 ATTGATAATA
285579 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
285604 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:285614 original size:32 final size:33
Alignment explanation
Indices: 285538--285617 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 33
285528 TGTATGAAAA
*
285538 TTTTAAATTATTATATATTTTATATTTTTTTAT
1 TTTTAAAATATTATATATTTTATATTTTTTTAT
** * * *
285571 TGATAATATATT-TTTATTTT-TATTTTTATTTT
1 TTTTAAAATATTATATATTTTATATTTTT-TTAT
285603 TTTTAAAATATTATA
1 TTTTAAAATATTATA
285618 AATTCACTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
31 7 0.20
32 19 0.54
33 9 0.26
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (33 bp):
TTTTAAAATATTATATATTTTATATTTTTTTAT
Found at i:286103 original size:207 final size:207
Alignment explanation
Indices: 285706--286119 Score: 780
Period size: 207 Copynumber: 2.0 Consensus size: 207
285696 GAAGCAAAGT
285706 TGTGATGACTGAGAAACCTCTTTTCCTTTTATCCTTCTTTGAGATACTGCTCTACTTGCGGCAGC
1 TGTGATGACTGAGAAACCTCTTTTCCTTTTATCCTTCTTTGAGATACTGCTCTACTTGCGGCAGC
285771 GAGTACAGCTCACCTCAACTCATACCCAATTGCCATTCATGGCTTCTCTTCAAGACAAATCTAAA
66 GAGTACAGCTCACCTCAACTCATACCCAATTGCCATTCATGGCTTCTCTTCAAGACAAATCTAAA
285836 GAGAAAAGGTTATACTAGACTGCCAAGTATATCTTTTCCTTTTACCATCTATCCCCATTCTCA-C
131 GAGAAAAGGTTATACTAGACTGCCAAGTATATCTTTTCCTTTTACCATCTATCCCCATTCTCACC
285900 CGACAAAGCTCC
196 CGACAAAGCTCC
285912 TGTGATGACTGAGAAA-C-CTTTTCCTTTTATCCTTCTTTGAGATACTGCTCTACTTGCGGCAGC
1 TGTGATGACTGAGAAACCTCTTTTCCTTTTATCCTTCTTTGAGATACTGCTCTACTTGCGGCAGC
285975 GAGTACAGCTCACCTCAACTCATACCCAATTGCCCATTCAATGGCTTCTTCTTCAAGACAAATCT
66 GAGTACAGCTCACCTCAACTCATACCCAATTG-CCATTC-ATGGCTTC-TCTTCAAGACAAATCT
286040 AAAGAGAAAAGGTTATACTAGACTGCCAAGTATATCTTTTCCTTTTACCATCTATCCCCATTCTC
128 AAAGAGAAAAGGTTATACTAGACTGCCAAGTATATCTTTTCCTTTTACCATCTATCCCCATTCTC
286105 ACCCGACAAAGCTCC
193 ACCCGACAAAGCTCC
286120 ATCTCTAAAT
Statistics
Matches: 204, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
204 78 0.38
205 7 0.03
206 24 0.12
207 82 0.40
208 13 0.06
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (207 bp):
TGTGATGACTGAGAAACCTCTTTTCCTTTTATCCTTCTTTGAGATACTGCTCTACTTGCGGCAGC
GAGTACAGCTCACCTCAACTCATACCCAATTGCCATTCATGGCTTCTCTTCAAGACAAATCTAAA
GAGAAAAGGTTATACTAGACTGCCAAGTATATCTTTTCCTTTTACCATCTATCCCCATTCTCACC
CGACAAAGCTCC
Found at i:292888 original size:18 final size:18
Alignment explanation
Indices: 292865--292902 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
292855 AACTAATAGA
292865 AATATT-TAATTATTTCAT
1 AATATTATAATTA-TTCAT
*
292883 AATATTATATTTATTCAT
1 AATATTATAATTATTCAT
292901 AA
1 AA
292903 AATAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
AATATTATAATTATTCAT
Found at i:293341 original size:6 final size:6
Alignment explanation
Indices: 293330--293371 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
293320 AAAAAATTAT
*
293330 TTTTTA TTTTTA TTTTTA TTTTTAA TTTTTTA TATTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTT-A -TTTTTA TTTTTA TTTT
293372 AAAATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 25 0.78
7 2 0.06
8 5 0.16
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:293344 original size:13 final size:13
Alignment explanation
Indices: 293326--293371 Score: 67
Period size: 12 Copynumber: 3.5 Consensus size: 13
293316 TGAAAAAAAA
293326 TTATTTTTTATTT
1 TTATTTTTTATTT
293339 TTA-TTTTTATTT
1 TTATTTTTTATTT
*
293351 TTAATTTTTTATAT
1 TT-ATTTTTTATTT
293365 TTATTTT
1 TTATTTT
293372 AAAATAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.37
13 9 0.30
14 10 0.33
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:308942 original size:17 final size:17
Alignment explanation
Indices: 308920--308952 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
308910 AGCCTGAAGA
308920 AGACAAGCAAAA-AAGTT
1 AGACAA-CAAAACAAGTT
308937 AGACAACAAAACAAGT
1 AGACAACAAAACAAGT
308953 GATGGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.61, C:0.15, G:0.15, T:0.09
Consensus pattern (17 bp):
AGACAACAAAACAAGTT
Found at i:313980 original size:24 final size:24
Alignment explanation
Indices: 313947--314034 Score: 122
Period size: 24 Copynumber: 3.7 Consensus size: 24
313937 TTATATTATA
*
313947 ATACCTGACCTGGATTCTGATCGG
1 ATACTTGACCTGGATTCTGATCGG
* *
313971 ATAATTGACCTGGATTCTGATCGA
1 ATACTTGACCTGGATTCTGATCGG
* **
313995 ATACTTGACCTGGATTTTGATTTG
1 ATACTTGACCTGGATTCTGATCGG
314019 ATACTTGACCTGGATT
1 ATACTTGACCTGGATT
314035 ATGTTTTGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (24 bp):
ATACTTGACCTGGATTCTGATCGG
Found at i:314050 original size:24 final size:24
Alignment explanation
Indices: 313947--314044 Score: 99
Period size: 24 Copynumber: 4.1 Consensus size: 24
313937 TTATATTATA
* * **
313947 ATACCTGACCTGGATTCTGATCGG
1 ATACTTGACCTGGATTATGATTTG
* * *
313971 ATAATTGACCTGGATTCTGA-TCG
1 ATACTTGACCTGGATTATGATTTG
*
313994 AATACTTGACCTGGATTTTGATTTG
1 -ATACTTGACCTGGATTATGATTTG
*
314019 ATACTTGACCTGGATTATGTTTTG
1 ATACTTGACCTGGATTATGATTTG
314043 AT
1 AT
314045 TTTTGATATA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
23 1 0.02
24 60 0.95
25 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (24 bp):
ATACTTGACCTGGATTATGATTTG
Found at i:330736 original size:30 final size:31
Alignment explanation
Indices: 330702--330763 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
330692 GGACCTATGT
330702 AACTGT-CATATGTTCCAAAGAACATAGGTA
1 AACTGTCCATATGTTCCAAAGAACATAGGTA
**
330732 AACTGTCCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTTCCAAAGAACATAGGTA
330763 A
1 A
330764 CCCTCGACTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (31 bp):
AACTGTCCATATGTTCCAAAGAACATAGGTA
Found at i:335246 original size:33 final size:34
Alignment explanation
Indices: 335209--335274 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
335199 ATTTGGCAAG
*
335209 TTGGAAAATTCATC-TTGGTTGGTGGCCAACTTA
1 TTGGAAAATTCATCTTTGGTAGGTGGCCAACTTA
335242 TTGGAAAATTCATCTTTGGTAGGTGGCCAACTT
1 TTGGAAAATTCATCTTTGGTAGGTGGCCAACTT
335275 TGCACATGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (34 bp):
TTGGAAAATTCATCTTTGGTAGGTGGCCAACTTA
Found at i:353094 original size:20 final size:20
Alignment explanation
Indices: 353060--353134 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
353050 CAACACTGAA
* *
353060 TTTCAAATTCACAACTCGA-
1 TTTCGAATTCGCAACTCGAT
353079 TTTCTGAATTCGCAACTCGAT
1 TTTC-GAATTCGCAACTCGAT
*
353100 TTTCGATTTCGCAACTCGAT
1 TTTCGAATTCGCAACTCGAT
353120 TTTCGAATTCGCAAC
1 TTTCGAATTCGCAAC
353135 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
19 4 0.08
20 42 0.84
21 4 0.08
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (20 bp):
TTTCGAATTCGCAACTCGAT
Found at i:353149 original size:40 final size:39
Alignment explanation
Indices: 353047--353154 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
353037 AATCTGTAAA
* * *
353047 TCGCAACACTGAATTTCAAATTCACAACTCGATTTCTGAAT
1 TCGCAACAC--AATTTTAATTTCGCAACTCGATTTCTGAAT
* * *
353088 TCGCAACTCGATTTTCGATTTCGCAACTCGATTT-TCGAAT
1 TCGCAACACAATTTT-AATTTCGCAACTCGATTTCT-GAAT
353128 TCGCAACACAAATTTTAATTTCGCAAC
1 TCGCAACAC-AATTTTAATTTCGCAAC
353155 AGGTTTTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 5 0.09
40 37 0.67
41 13 0.24
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (39 bp):
TCGCAACACAATTTTAATTTCGCAACTCGATTTCTGAAT
Found at i:353330 original size:14 final size:15
Alignment explanation
Indices: 353311--353348 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
353301 TCCCCATCTC
353311 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
353325 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
353341 TAATTTTT
1 TAATTTTT
353349 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:354359 original size:20 final size:20
Alignment explanation
Indices: 354316--354361 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
354306 AGTAGTTTCT
* * *
354316 GAAAATTAAATTCGCAAAGC
1 GAAAATGAAAATCGCAAAGA
*
354336 GAAAATGAAAATCGCAACGA
1 GAAAATGAAAATCGCAAAGA
354356 GAAAAT
1 GAAAAT
354362 CGCAACGCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.54, C:0.13, G:0.17, T:0.15
Consensus pattern (20 bp):
GAAAATGAAAATCGCAAAGA
Found at i:354361 original size:14 final size:14
Alignment explanation
Indices: 354342--354373 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
354332 AAGCGAAAAT
354342 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
354356 GAAAATCGCAACGC
1 GAAAATCGCAACGA
354370 GAAA
1 GAAA
354374 CTAAAATCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.06
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:354819 original size:22 final size:22
Alignment explanation
Indices: 354802--354866 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
354792 GGATTTCACC
354802 GGAGATGGGGACGGATTTCGTT
1 GGAGATGGGGACGGATTTCGTT
*
354824 GGAGATGAGGACGGATTTCGTT
1 GGAGATGGGGACGGATTTCGTT
* *
354846 GGAGATGGGGATGGATGTCGT
1 GGAGATGGGGACGGATTTCGT
354867 CGTAGAGAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.20, C:0.08, G:0.46, T:0.26
Consensus pattern (22 bp):
GGAGATGGGGACGGATTTCGTT
Found at i:355102 original size:20 final size:21
Alignment explanation
Indices: 355049--355102 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
355039 CAATTTACAT
*
355049 ATTCGCGTTGCGAATTTGGAA
1 ATTCGCGTTGCGAAATTGGAA
* *
355070 ATT-GGGTTACGAAATTGG-A
1 ATTCGCGTTGCGAAATTGGAA
*
355089 GTTCGCGTTGCGAA
1 ATTCGCGTTGCGAA
355103 TTTGTTGGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.31
Consensus pattern (21 bp):
ATTCGCGTTGCGAAATTGGAA
Found at i:355729 original size:29 final size:29
Alignment explanation
Indices: 355676--355738 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
355666 TTATCTGATG
* **
355676 TTAATATATTAATAATATTCTTATTTTTA
1 TTAATATATTAATAAAATTCTTATTCATA
355705 TTAATAT-TTAATAAAACTT-TGTATTCATA
1 TTAATATATTAATAAAA-TTCT-TATTCATA
355734 TTAAT
1 TTAAT
355739 TATCAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 9 0.31
29 20 0.69
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.54
Consensus pattern (29 bp):
TTAATATATTAATAAAATTCTTATTCATA
Done.