genome.fa.s8873.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008873.1 Hibiscus syriacus cultivar Beakdansim tig00112109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60568

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245--270	3	8.7	3	100	0	52	0	30	0	69	0.89
16473--16508	18	2.0	18	89	10	56	58	5	13	22	1.56
18327--18367	21	2.0	21	100	0	82	29	34	4	31	1.79
19492--19527	15	2.4	15	95	0	63	30	0	0	69	0.89
19577--19676	37	2.7	37	93	0	182	30	44	18	8	1.78
19677--19751	25	3.0	25	96	0	141	36	18	16	29	1.92
33964--34311	44	7.4	45	66	14	170	26	30	18	24	1.97
34008--34386	51	7.9	46	66	18	161	26	30	17	25	1.97
33955--34386	142	3.0	142	98	0	830	26	30	17	24	1.97
34660--34692	3	11.0	3	87	12	50	33	0	0	66	0.92
34665--34689	13	1.9	13	100	0	50	36	0	0	64	0.94
34665--34695	16	1.9	16	100	0	62	35	0	0	64	0.94
34811--34910	25	4.0	25	94	0	173	38	19	15	28	1.91
38615--38666	20	2.6	20	96	0	95	38	26	13	21	1.90
38656--38754	21	4.8	20	72	6	72	36	23	19	21	1.95
38721--38914	20	9.6	20	81	5	221	35	25	19	19	1.95
38721--38914	60	3.2	60	83	0	253	35	25	19	19	1.95
39296--39366	33	2.2	33	92	0	115	11	22	18	47	1.80
39487--39541	14	3.6	14	73	21	56	40	23	27	9	1.85
39487--39557	33	2.2	33	92	0	115	42	25	23	8	1.82
39553--39650	19	5.7	19	70	22	81	10	24	22	42	1.84
39575--39664	14	5.7	14	74	23	81	8	25	23	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39558--39672	33	3.5	33	95	0	212	9	24	20	45	1.81
41363--41741	183	2.1	185	96	2	719	22	12	18	46	1.83
41363--41739	93	4.1	93	97	2	717	22	12	18	46	1.83
41783--41910	19	7.3	18	75	17	119	46	28	17	8	1.77
41838--41894	14	3.8	13	74	26	51	45	28	19	7	1.76
41819--41910	32	2.8	32	90	8	141	46	27	18	7	1.76
41906--42040	19	7.6	19	76	16	137	10	19	24	45	1.81
41928--41984	14	3.7	14	77	20	60	8	21	24	45	1.80
41911--42003	33	2.8	33	98	0	177	9	20	22	47	1.79
43850--43922	38	1.9	38	97	0	137	28	1	16	53	1.51
43845--43909	19	3.4	19	64	8	51	24	1	15	58	1.46
43904--43939	14	2.6	14	95	0	63	33	0	22	44	1.53
44046--44147	19	5.6	19	84	13	151	44	17	23	14	1.86
44176--44500	19	18.4	19	80	16	396	14	20	17	47	1.83
44176--44500	71	4.6	72	81	14	380	14	20	17	47	1.83
44154--44469	161	2.0	157	93	3	544	14	21	17	46	1.83
44195--44500	33	8.8	33	80	13	280	14	20	17	47	1.83
44154--44469	52	6.0	52	94	4	542	14	21	17	46	1.83
46988--47034	24	2.0	24	87	8	69	38	21	14	25	1.92
47697--48063	20	18.5	20	85	5	440	20	18	26	34	1.96
56134--56342	104	2.0	106	87	5	309	39	20	13	26	1.90

Tables:   1

The End!