Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008875.1 Hibiscus syriacus cultivar Beakdansim tig00112112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33448

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9835--9915
40
2.0
40
100
0
162
48
12
4
34
1.62
10614--10643
15
1.9
16
93
6
53
40
13
10
36
1.78
18413--18440
13
2.2
13
100
0
56
0
21
0
78
0.75
25462--25560
10
10.3
9
78
12
99
15
26
28
30
1.96
25462--25560
19
5.2
18
83
9
99
15
26
28
30
1.96
25462--25560
29
3.4
28
88
5
135
15
26
28
30
1.96
25556--25628
17
4.3
17
78
13
87
17
45
23
13
1.84
25574--25635
22
2.7
22
92
5
97
17
45
24
12
1.84
25618--25648
7
4.4
7
100
0
62
16
29
29
25
1.96
25562--25616
12
4.8
12
84
8
78
18
45
23
12
1.83
26517--26592
30
2.5
31
82
6
100
14
26
30
28
1.95
32791--32830
9
4.3
9
84
6
53
15
25
30
30
1.95
32826--32876
17
3.3
17
74
25
67
17
45
23
13
1.84
32826--32890
29
2.2
30
91
5
105
16
41
24
16
1.89
32866--32903
7
5.4
7
100
0
76
15
28
28
26
1.96
32832--32864
12
2.8
12
100
0
66
18
45
24
12
1.83

Tables:   1

The End!