Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008878.1 Hibiscus syriacus cultivar Beakdansim tig00112117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84504

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3275--3304
14
2.1
14
100
0
60
20
30
13
36
1.90
6197--6249
5
9.8
5
76
15
52
7
22
50
18
1.72
6190--6250
17
3.3
17
77
20
68
11
21
47
19
1.81
6183--6249
22
3.0
22
93
4
107
11
22
46
19
1.82
6246--6285
9
4.3
9
90
6
62
22
30
32
15
1.94
6248--6305
19
3.1
19
90
5
82
24
29
27
18
1.98
6248--6305
9
6.1
10
79
15
61
24
29
27
18
1.98
8176--8226
21
2.4
21
96
0
93
56
1
0
41
1.10
8257--8302
12
3.7
12
86
11
65
45
2
2
50
1.26
8223--8361
61
2.3
61
69
14
74
46
11
0
41
1.45
8218--8375
14
10.6
14
71
17
88
46
10
0
42
1.43
8173--8375
72
2.8
72
76
15
184
48
9
0
41
1.39
8475--8519
21
2.1
21
91
0
72
55
0
0
44
0.99
8480--8557
35
2.1
35
83
6
93
51
1
0
47
1.09
8497--8648
14
11.9
14
73
17
50
45
7
0
46
1.35
8541--8757
51
4.4
51
75
16
197
42
10
0
45
1.45
8510--8756
11
20.2
11
70
20
111
44
9
0
45
1.42
8557--8699
14
10.7
14
77
15
160
42
11
1
44
1.48
8901--8992
21
4.7
20
69
17
50
44
10
0
44
1.39
8886--9047
58
2.8
59
86
4
224
44
8
0
46
1.38
8946--9027
18
4.1
20
66
17
62
46
12
0
41
1.41
8957--9060
50
2.1
50
80
7
113
47
9
0
43
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9060--9093
14
2.4
14
90
0
50
47
11
2
38
1.55
11899--11932
4
8.5
4
100
0
68
52
23
0
23
1.47
12358--12480
28
4.5
27
78
9
133
55
17
0
26
1.47
12353--12499
56
2.5
56
75
18
156
55
17
0
26
1.47
12388--12465
21
4.0
21
67
24
64
56
16
1
25
1.48
13000--13034
14
2.5
14
85
0
52
8
40
31
20
1.82
15373--15626
137
1.9
137
82
3
323
37
13
11
38
1.81
15367--15655
137
2.1
136
79
5
305
35
12
13
38
1.83
16570--16602
13
2.4
14
90
5
50
42
0
0
57
0.98
16522--16600
32
2.4
32
82
2
104
49
1
0
49
1.09
16779--16823
23
2.0
23
86
0
63
53
2
2
42
1.25
16926--16982
28
2.0
29
83
10
73
49
0
1
49
1.11
28836--28874
20
2.0
20
84
0
51
33
2
7
56
1.41
31456--31621
60
2.8
59
84
6
201
43
3
17
34
1.66
31528--31621
29
3.2
29
65
5
71
46
3
12
37
1.58
36135--36198
28
2.3
28
97
0
119
25
29
25
20
1.99
45726--45766
2
21.0
2
95
5
75
48
0
0
51
1.00
48557--48603
2
23.5
2
100
0
94
51
0
0
48
1.00
65369--65507
37
3.8
37
87
5
192
35
26
12
25
1.91
70228--70356
65
2.0
65
100
0
258
49
10
3
35
1.56
72184--72327
70
2.0
71
89
1
218
47
15
18
18
1.82
73050--73133
43
2.0
43
100
0
168
33
19
19
28
1.96

Tables:   1

The End!