Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008880.1 Hibiscus syriacus cultivar Beakdansim tig00112124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 568240
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 3
Found at i:430 original size:24 final size:24
Alignment explanation
Indices: 391--437 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
381 AAATTTGGTC
391 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
415 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
438 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:2932 original size:19 final size:19
Alignment explanation
Indices: 2910--3215 Score: 356
Period size: 19 Copynumber: 17.4 Consensus size: 19
2900 CGGAAAATAC
*
2910 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2929 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
*
2943 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2962 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
2976 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
2995 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
3014 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
3028 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
3047 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
3066 AATCG-AA-CCGACAT---
1 AATCGCAATGCGAAATGAA
*
3080 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
3099 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
3118 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
3137 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
3156 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
3170 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
3189 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
3208 AATCGCAA
1 AATCGCAA
3216 CGAGATAATC
Statistics
Matches: 249, Mismatches: 13, Indels: 50
0.80 0.04 0.16
Matches are distributed among these distances:
14 45 0.18
15 4 0.02
16 16 0.06
17 16 0.06
18 4 0.02
19 164 0.66
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:2952 original size:33 final size:34
Alignment explanation
Indices: 2910--3237 Score: 198
Period size: 33 Copynumber: 9.5 Consensus size: 34
2900 CGGAAAATAC
*
2910 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
* * * *
2943 AATCGCAACGCGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
*
2976 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
* * * * *
3014 AATCGCAACGAGAGAATCG-CAAT-GCGA-AATGAA
1 AATCGCAATGCGA-AAT-GAAAATCCCAACAATGAA
* *
3047 AATCGCAATGCGAAATGAAAAT-CGAAC--CGACA
1 AATCGCAATGCGAAATGAAAATCCCAACAATGA-A
* *
3079 TAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAA
1 -AATCGCAATGCGAAATGAAAATC-CCA-AC--AATGAA
*
3118 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
*
3156 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCCCAA--C--AATGAA
* * *
3189 AATCGCAATGCGAAATGAAAATCGCAACGA-GAT
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
3222 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
3238 TATAAACGCA
Statistics
Matches: 245, Mismatches: 24, Indels: 52
0.76 0.07 0.16
Matches are distributed among these distances:
31 3 0.01
32 8 0.03
33 138 0.56
34 2 0.01
35 9 0.04
36 10 0.04
37 2 0.01
38 63 0.26
39 7 0.03
40 3 0.01
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCCCAACAATGAA
Found at i:2970 original size:52 final size:52
Alignment explanation
Indices: 2910--3163 Score: 255
Period size: 52 Copynumber: 4.8 Consensus size: 52
2900 CGGAAAATAC
* *
2910 AATCGCAACGCGA-AAT-GAAAATCCCAACATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACGCGAGAATCG-AAATCCGAA-ATGAAAATCGCAATGCGAAATGAA
* * *
2962 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * *
3014 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * * * *
3066 AATCG-AAC-CGACATAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAA
1 AATCGCAACGCG--AGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
* * *
3118 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAACGCG--A-G--AATCGAAATCCGAAATGAAAATCGCAA
3164 CGAAAGAATC
Statistics
Matches: 180, Mismatches: 13, Indels: 13
0.87 0.06 0.06
Matches are distributed among these distances:
50 1 0.01
51 3 0.02
52 134 0.74
53 11 0.06
54 5 0.03
57 26 0.14
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (52 bp):
AATCGCAACGCGAGAATCGAAATCCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:3053 original size:71 final size:71
Alignment explanation
Indices: 2976--3215 Score: 355
Period size: 71 Copynumber: 3.4 Consensus size: 71
2966 GCAACGAGAG
*
2976 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
3041 AATGAA
66 AATGAA
* * *
3047 AATCGCAATGCGAAATGAAAATCG-AA-CCGACAT---AATCGCAATGCGAAATTAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG-AA--AGAATCGCAA
*
3107 TACGAAATGAA
61 TGCGAAATGAA
3118 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
3183 AATGAA
66 AATGAA
3189 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
3216 CGAGATAATC
Statistics
Matches: 150, Mismatches: 9, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
66 8 0.05
68 2 0.01
69 6 0.04
70 2 0.01
71 113 0.75
72 2 0.01
73 7 0.05
74 2 0.01
76 8 0.05
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
AATGAA
Found at i:3195 original size:52 final size:53
Alignment explanation
Indices: 2976--3237 Score: 287
Period size: 52 Copynumber: 4.9 Consensus size: 53
2966 GCAACGAGAG
*
2976 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAATG--AATCGCAATGCGAAATGAA
**
3028 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA----AAT-CGAACCGACA
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAATGAATCGCAATGCGAAATGA-A
*
3079 TAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGC-A-ACGAAATG--AATCGCAATGCGAAATGAA
3137 AATCGCAATGCGAAATGAAAATCGCAACGAAA-GAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAATGAA
*
3189 AATCGCAATGCGAAATGAAAATCGCAACGAGAT-AATCGCAATGCGAAAT
1 AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAAT
3238 TATAAACGCA
Statistics
Matches: 187, Mismatches: 7, Indels: 32
0.83 0.03 0.14
Matches are distributed among these distances:
46 2 0.01
47 2 0.01
50 4 0.02
52 133 0.71
53 1 0.01
54 4 0.02
55 6 0.03
56 1 0.01
57 24 0.13
58 4 0.02
59 6 0.03
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAATGAATCGCAATGCGAAATGAA
Found at i:3291 original size:142 final size:142
Alignment explanation
Indices: 2910--3247 Score: 505
Period size: 142 Copynumber: 2.4 Consensus size: 142
2900 CGGAAAATAC
* * * * *
2910 AATCGCAACGCGAAATGAAAATCCCAACATGA-A-AATCGCAACGCGAAATGAAAATCGC-A-AC
1 AATCGCAATGCGAAATGAAAAT-CGAAC-CGACATAATCGCAATGCGAAATTAAAATCGCAATAC
* *
2971 G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG
64 GAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCG
3033 CAATGCGAAATGAA
129 CAATGCGAAATGAA
3047 AATCGCAATGCGAAATGAAAATCGAACCGACATAATCGCAATGCGAAATTAAAATCGCAATACGA
1 AATCGCAATGCGAAATGAAAATCGAACCGACATAATCGCAATGCGAAATTAAAATCGCAATACGA
3112 AATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
66 AATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
3177 ATGCGAAATGAA
131 ATGCGAAATGAA
*
3189 AATCGCAATGCGAAATGAAAATCGCAA-CGAGATAATCGCAATGCGAAATTATAAA-CGCA
1 AATCGCAATGCGAAATGAAAATCG-AACCGACATAATCGCAATGCGAAATTA-AAATCGCA
3248 TTGCGATTTC
Statistics
Matches: 184, Mismatches: 8, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
135 2 0.01
136 5 0.03
137 44 0.24
138 1 0.01
139 3 0.02
141 1 0.01
142 123 0.67
143 5 0.03
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (142 bp):
AATCGCAATGCGAAATGAAAATCGAACCGACATAATCGCAATGCGAAATTAAAATCGCAATACGA
AATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
ATGCGAAATGAA
Found at i:3352 original size:19 final size:19
Alignment explanation
Indices: 3244--3344 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
3234 AAATTATAAA
3244 CGCATTGCGA-TTTCATTT
1 CGCATTGCGATTTTCATTT
3262 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
3282 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
3298 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
3315 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
3334 CGCATTGCGAT
1 CGCATTGCGAT
3345 AGTCATTTTT
Statistics
Matches: 74, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 46 0.62
20 8 0.11
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:3484 original size:14 final size:14
Alignment explanation
Indices: 3451--3486 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
3441 CATCAATTAC
3451 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
3465 AC-AATCATCTTTT
1 ACAAATCAACTTTT
3478 ACAAATCAA
1 ACAAATCAA
3487 TTAAACAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:5459 original size:14 final size:14
Alignment explanation
Indices: 5440--5496 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
5430 GCGAAATGAA
*
5440 AATCGCAACGACAG
1 AATCGCAACGAAAG
5454 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
5471 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
5487 AATCGCAACG
1 AATCGCAACG
5497 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:5467 original size:33 final size:33
Alignment explanation
Indices: 5421--5512 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
5411 GCGAAACCAA
*
5421 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
5454 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
5487 AATCGCAACGCGAAATGAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
5513 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:5518 original size:19 final size:19
Alignment explanation
Indices: 5384--5512 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
5374 TAGTTTACTT
* *
5384 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
5404 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
5423 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
5442 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
5456 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
5475 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
5489 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
5508 TCGCA
1 TCGCA
5513 TTGCGATTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 42 0.46
20 12 0.13
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:5555 original size:33 final size:33
Alignment explanation
Indices: 5513--5605 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
5503 GAAAATCGCA
5513 TTGCGATTTTCATTTCGCGTTGCGA-TCTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTC-TGTCG
**
5546 TTGCGATTTTGGTTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
5579 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
5606 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 53 0.96
34 2 0.04
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:5634 original size:20 final size:19
Alignment explanation
Indices: 5508--5642 Score: 105
Period size: 19 Copynumber: 7.6 Consensus size: 19
5498 GAAATGAAAA
*
5508 TCGCATTGCGATTTTCA-TT
1 TCGCGTTGCGATTTT-AGTT
*
5527 TCGCGTTGCGATCTT-G--
1 TCGCGTTGCGATTTTAGTT
*
5543 T--CGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTAGTT
*
5560 TCGCGTTGCGATTCT-G--
1 TCGCGTTGCGATTTTAGTT
5576 T--CGTTGCGATTTTCA-TT
1 TCGCGTTGCGATTTT-AGTT
*
5593 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTAGTT
5612 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTT-AGTT
*
5632 TCGTGTTGCGA
1 TCGCGTTGCGA
5643 AAGTAAACTA
Statistics
Matches: 94, Mismatches: 8, Indels: 27
0.73 0.06 0.21
Matches are distributed among these distances:
14 22 0.23
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 53 0.56
20 13 0.14
ACGTcount: A:0.10, C:0.19, G:0.27, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTAGTT
Found at i:5845 original size:93 final size:93
Alignment explanation
Indices: 5686--6157 Score: 912
Period size: 93 Copynumber: 5.1 Consensus size: 93
5676 TTGAATGGAT
5686 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
5751 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
5779 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
5844 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
5872 AAATTTACTTTCAACCAAAAGATAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
5937 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
5965 AAATTTACTTTCAACC-AAAGACAAAACAACGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
6028 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
6056 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
6121 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
6149 AAATTTACT
1 AAATTTACT
6158 AAGCAATCTA
Statistics
Matches: 373, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
91 69 0.18
92 41 0.11
93 263 0.71
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:6092 original size:184 final size:186
Alignment explanation
Indices: 5686--6157 Score: 912
Period size: 184 Copynumber: 2.5 Consensus size: 186
5676 TTGAATGGAT
5686 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
5751 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
5816 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
*
5872 AAATTTACTTTCAACCAAAAGATAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
5937 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACC-AAAGACAAAACAACGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
6001 TA-TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
6056 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
6121 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
6158 AAGCAATCTA
Statistics
Matches: 283, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
184 154 0.54
185 21 0.07
186 108 0.38
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:7876 original size:14 final size:14
Alignment explanation
Indices: 7857--7946 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
7847 TTGAAATGAA
7857 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7871 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
7888 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
7904 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7923 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7937 AATCGCAACG
1 AATCGCAACG
7947 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7894 original size:33 final size:33
Alignment explanation
Indices: 7849--7963 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
7839 GTCTTTGGTT
7849 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
7882 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7915 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7948 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7964 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7895 original size:19 final size:18
Alignment explanation
Indices: 7856--7968 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
7846 GTTGAAATGA
7856 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
7871 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
7888 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
7904 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
7921 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
7937 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
7954 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
7969 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:7999 original size:14 final size:14
Alignment explanation
Indices: 7980--8034 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
7970 TTTGGTTTCG
7980 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7994 CGTTGCGATTTCCATTTCG
1 CGTTGCGA-TT-C---TCT
8013 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
8027 CGTTGCGA
1 CGTTGCGA
8035 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.09, C:0.27, G:0.24, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:8197 original size:33 final size:33
Alignment explanation
Indices: 8155--8225 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
8145 AATACTAACT
*
8155 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
8188 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
8221 TGAAA
1 TGAAA
8226 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:8456 original size:22 final size:22
Alignment explanation
Indices: 8404--8458 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8394 TGGTTGTGAG
**
8404 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
8426 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
8448 GGATTTCTTCG
1 GGATTTCTTCG
8459 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:8629 original size:20 final size:20
Alignment explanation
Indices: 8604--8795 Score: 212
Period size: 20 Copynumber: 9.7 Consensus size: 20
8594 CTTTAAATAT
8604 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
8624 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
8646 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
8665 CGCGTTGCGA--TACGGATA
1 CGCGTTGCGATTTACGGATA
* **
8683 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
8703 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
8723 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
8743 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
8763 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
8783 CGCGTTGCGATTT
1 CGCGTTGCGATTT
8796 TGGAAAATCG
Statistics
Matches: 145, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
18 17 0.12
19 2 0.01
20 109 0.75
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:8751 original size:78 final size:79
Alignment explanation
Indices: 8608--8753 Score: 224
Period size: 78 Copynumber: 1.9 Consensus size: 79
8598 AAATATCGCG
** * * *
8608 TTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATACGCGTTGC
1 TTGCGATTTACCCATACGCGTTGCGATTTTACGGATTAACGTTGCGATTTACGGATACGCGTTGC
8673 GATACGGATACGCA
66 GATACGGATACGCA
8687 TTGCGATTTACCCATACGCGTTGCGA-TTTACGGA-TACACGTTGCGATTTACGGATACGCGTTG
1 TTGCGATTTACCCATACGCGTTGCGATTTTACGGATTA-ACGTTGCGATTTACGGATACGCGTTG
8750 CGAT
65 CGAT
8754 TTATGTGTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
77 2 0.03
78 35 0.57
79 24 0.39
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (79 bp):
TTGCGATTTACCCATACGCGTTGCGATTTTACGGATTAACGTTGCGATTTACGGATACGCGTTGC
GATACGGATACGCA
Found at i:8789 original size:60 final size:60
Alignment explanation
Indices: 8604--8795 Score: 244
Period size: 60 Copynumber: 3.2 Consensus size: 60
8594 CTTTAAATAT
**
8604 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* *** *
8665 CGCGTTGCGA--TACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
8723 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
8783 CGCGTTGCGATTT
1 CGCGTTGCGATTT
8796 TGGAAAATCG
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
58 33 0.30
59 17 0.15
60 50 0.45
61 10 0.09
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:8812 original size:21 final size:20
Alignment explanation
Indices: 8788--8864 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
8778 ATATTCGCGT
8788 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
8809 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
8829 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
8851 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
8865 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:8875 original size:20 final size:20
Alignment explanation
Indices: 8850--8901 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
8840 AAGAATCGCG
*
8850 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
8870 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
8890 TTGCGATTCTGG
1 TTGCGATTCTGG
8902 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:11131 original size:14 final size:15
Alignment explanation
Indices: 11099--11132 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
11089 TAGATACGAT
11099 TATTTAAATATAAAA
1 TATTTAAATATAAAA
*
11114 TATTTAAATA-ATAA
1 TATTTAAATATAAAA
11128 TATTT
1 TATTT
11133 TTTAACTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTTAAATATAAAA
Found at i:22007 original size:21 final size:21
Alignment explanation
Indices: 21983--22046 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
21973 GCAAATTCGC
21983 GTTGCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
* **
22004 GTTGAAAATCGCGTTGCGAT-
1 GTTGCATTTCGCGTTGCGATA
* *
22024 TTTCCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
22045 GT
1 GT
22047 CTACAGTTGT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
20 15 0.45
21 18 0.55
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (21 bp):
GTTGCATTTCGCGTTGCGATA
Found at i:22807 original size:22 final size:22
Alignment explanation
Indices: 22782--22871 Score: 98
Period size: 22 Copynumber: 4.2 Consensus size: 22
22772 TGGAAAATCA
22782 CAACGACAA-TCGTAGACTATCG
1 CAACGACAACT-GTAGACTATCG
*
22804 CAACGATAACTGTAGACTATCG
1 CAACGACAACTGTAGACTATCG
* * **
22826 CAACG--AA-TTTGGAAAATCG
1 CAACGACAACTGTAGACTATCG
22845 CAACGACAACTGTAGACTATCG
1 CAACGACAACTGTAGACTATCG
22867 CAACG
1 CAACG
22872 CGAAATGAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
19 13 0.24
20 2 0.04
21 2 0.04
22 37 0.67
23 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (22 bp):
CAACGACAACTGTAGACTATCG
Found at i:22882 original size:41 final size:42
Alignment explanation
Indices: 22800--22890 Score: 125
Period size: 41 Copynumber: 2.2 Consensus size: 42
22790 ATCGTAGACT
* *
22800 ATCGCAACGATAACTGTAGACTATCGCAACGAATTTGG-AAA
1 ATCGCAACGACAACTGTAGACTATCGCAACGAATATGGAAAA
22841 ATCGCAACGACAACTGTAGACTATCGCAACGCGAA-AT-GAAAA
1 ATCGCAACGACAACTGTAGACTATCGCAA--CGAATATGGAAAA
22883 ATCGCAAC
1 ATCGCAAC
22891 ACGAATTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
41 29 0.64
42 12 0.27
43 4 0.09
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.18
Consensus pattern (42 bp):
ATCGCAACGACAACTGTAGACTATCGCAACGAATATGGAAAA
Found at i:22895 original size:63 final size:63
Alignment explanation
Indices: 22763--22899 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 63
22753 TTAACTATCA
* * **
22763 CAACGAATTTGGAAAATCACAACGACAATCGTAGACTATCGCAACGATAACTGTAGACTATCG
1 CAACGAATTTGGAAAATCACAACGACAATCGTAGACTATCGCAACGAGAAATGTAGAAAATCG
* *
22826 CAACGAATTTGGAAAATCGCAACGACAA-CTGTAGACTATCGCAACGCGAAATG-A-AAAATCG
1 CAACGAATTTGGAAAATCACAACGACAATC-GTAGACTATCGCAACGAGAAATGTAGAAAATCG
22887 CAACACGAATTTG
1 C-A-ACGAATTTG
22900 CGATAGTGGA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
61 6 0.09
62 3 0.05
63 56 0.86
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (63 bp):
CAACGAATTTGGAAAATCACAACGACAATCGTAGACTATCGCAACGAGAAATGTAGAAAATCG
Found at i:23074 original size:19 final size:16
Alignment explanation
Indices: 23028--23078 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
23018 TTATTTTCTC
*
23028 ATATTATAATTATATA
1 ATATTATAATTATAAA
*
23044 ATATTTTAATTATAAA
1 ATATTATAATTATAAA
23060 AGTTCATTATAATTATAAA
1 A--T-ATTATAATTATAAA
23079 GCTAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 15 0.52
18 1 0.03
19 13 0.45
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATTATAATTATAAA
Found at i:23385 original size:21 final size:21
Alignment explanation
Indices: 23337--23382 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23327 GTTGGATATA
* * *
23337 AGGTTAGGGTTTATGGTTTAG
1 AGGTTATGCTTTATGGTGTAG
23358 AGGTTATGCTTTATGGTGTAG
1 AGGTTATGCTTTATGGTGTAG
23379 -GGTT
1 AGGTT
23383 TATAATTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.43
Consensus pattern (21 bp):
AGGTTATGCTTTATGGTGTAG
Found at i:23407 original size:13 final size:14
Alignment explanation
Indices: 23376--23409 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
23366 CTTTATGGTG
*
23376 TAGGGTTTATAATT
1 TAGGGTTTATAAGT
23390 TAGGGTTT-TAAGT
1 TAGGGTTTATAAGT
23403 TAGGGTT
1 TAGGGTT
23410 AGGGTATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (14 bp):
TAGGGTTTATAAGT
Found at i:29722 original size:11 final size:11
Alignment explanation
Indices: 29706--29732 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
29696 CATGAATGGA
29706 GATGTGTTGAT
1 GATGTGTTGAT
29717 GATGTGTTGAT
1 GATGTGTTGAT
29728 GATGT
1 GATGT
29733 TCGATTGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (11 bp):
GATGTGTTGAT
Found at i:37363 original size:20 final size:21
Alignment explanation
Indices: 37340--37384 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
37330 CATTATATGT
**
37340 ATATTTATGAATAT-ATAAAA
1 ATATTTAACAATATAATAAAA
37360 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
37381 ATAT
1 ATAT
37385 CACTAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:38300 original size:20 final size:19
Alignment explanation
Indices: 38275--38311 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
38265 TACTAGTTTG
*
38275 TTTTTTTTCTTTTTCTGTA
1 TTTTTTTTCGTTTTCTGTA
38294 TTTTTTTTCGTTTTCTGT
1 TTTTTTTTCGTTTTCTGT
38312 TTCTGTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.11, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTTTTTCGTTTTCTGTA
Found at i:38327 original size:25 final size:25
Alignment explanation
Indices: 38279--38327 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
38269 AGTTTGTTTT
* * *
38279 TTTTCTTTTTCTGTATTTTTTTTCG
1 TTTTCTGTTTCTGTATCTTCTTTCG
*
38304 TTTTCTGTTTCTGTCTCTTCTTTC
1 TTTTCTGTTTCTGTATCTTCTTTC
38328 TCTCTCTGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.02, C:0.18, G:0.08, T:0.71
Consensus pattern (25 bp):
TTTTCTGTTTCTGTATCTTCTTTCG
Found at i:38815 original size:3 final size:3
Alignment explanation
Indices: 38807--38899 Score: 136
Period size: 3 Copynumber: 31.7 Consensus size: 3
38797 TTAATATATT
*
38807 TAA TAA TAA -AA TAA TAA TAA TAA TAA AAA TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
38853 TAA TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
38900 TGGATAAAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
2 4 0.05
3 76 0.95
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:39235 original size:119 final size:118
Alignment explanation
Indices: 39054--40062 Score: 1828
Period size: 119 Copynumber: 8.5 Consensus size: 118
39044 TTCTCCAGAT
** * *
39054 GAGTTCTTCTCATTATGAACT-TT-CTGCTGGGGATGATGTTCCATCAAATGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCT-CTGGAAATGATGATCCATCAATTGATGAATTCAAGCA
*
39117 AAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
*
39171 GAGTTCTTCTCATTATGAACTCTTTCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAA-TTGATGAATTCAAGCA
*
39236 AAAGGTTGAACAAGTTCTCCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39290 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAA-TTGATGAATTCAAGCA
*
39355 AAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
*
39409 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATGATGAATTCAAGCAA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTGATGAATTCAAGCAA
39474 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
66 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39527 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATC-AATTGATGAATTCAAGCA
39592 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39646 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATC-AATTGATGAATTCAAGCA
39711 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39765 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAA-TTGATGAATTCAAGCA
*
39830 AAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39884 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATC-AATTGATGAATTCAAGCA
39949 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
*
40003 GAGTTCTTCTCATTATGAACT-TT-CTCTGGAAATGATGATCCATCAAATGATGAATTCAAG
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTGATGAATTCAAG
40063 TCTTTGCTAA
Statistics
Matches: 871, Mismatches: 15, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
116 15 0.02
117 42 0.05
118 138 0.16
119 674 0.77
120 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (118 bp):
GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTGATGAATTCAAGCAA
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAC
Found at i:39748 original size:356 final size:356
Alignment explanation
Indices: 39054--40062 Score: 1866
Period size: 356 Copynumber: 2.8 Consensus size: 356
39044 TTCTCCAGAT
** *
39054 GAGTTCTTCTCATTATGAACT-TT-CTGCTGGGGATGATGTTCCATCAAATGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCT-CTGGAAATGATGATCCATCAAATGATGAATTCAAGCA
*
39117 AAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
* *
39182 ATTATGAACTCTTTCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAAC
130 ATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAAC
*
39247 AAGTTCTCCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTC
195 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTC
*
39312 TTCCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTC
260 TTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTC
*
39377 ATTATGAATTTCTTCTTCCTTCTTCAGATGAC
325 ATTATGAACTTCTTCTTCCTTCTTCAGATGAC
39409 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATGATGAATTCAAGCAA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATGATGAATTCAAGCAA
39474 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCA
66 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCA
39539 TTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACA
131 TTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACA
39604 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
196 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
39669 TCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCA
261 TCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCA
39734 TTATGAACTTCTTCTTCCTTCTTCAGATGAC
326 TTATGAACTTCTTCTTCCTTCTTCAGATGAC
*
39765 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAATTTGATGAATTCAAGCA
1 GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAA-ATGATGAATTCAAGCA
*
39830 AAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
65 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTC
39895 ATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAAC
130 ATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAAC
39960 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACT-
195 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTC
40024 TT-CTCTGGAAATGATGATCCATCAAA-TGATGAATTCAAG
260 TTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAG
40063 TCTTTGCTAA
Statistics
Matches: 640, Mismatches: 11, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
354 13 0.02
355 45 0.07
356 372 0.58
357 210 0.33
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (356 bp):
GAGTTCTTCTCATTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATGATGAATTCAAGCAA
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCA
TTATGAACTCTTCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACA
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCT
TCCTCTGGAAATGATGATCCATCAAATTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCA
TTATGAACTTCTTCTTCCTTCTTCAGATGAC
Found at i:40771 original size:52 final size:52
Alignment explanation
Indices: 40692--41000 Score: 559
Period size: 52 Copynumber: 5.9 Consensus size: 52
40682 TACTTGATTT
*
40692 TGTCCAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
1 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
*
40744 TGTCCAACCAGATCAGATAACTTAAAGAACACTTCCAGAAGATGCTATGTTC
1 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
40796 TGAT-CAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
1 TG-TCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
*
40848 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGTTC
1 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
40900 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
1 TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
40952 TGAT-CAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TG-TCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
41001 AGCACATTCA
Statistics
Matches: 249, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
51 1 0.00
52 246 0.99
53 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.24
Consensus pattern (52 bp):
TGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTC
Found at i:41886 original size:19 final size:19
Alignment explanation
Indices: 41864--41900 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
41854 AATAGAAAAG
*
41864 AATAAATTGAATTTCCAAA
1 AATAAATTGAATCTCCAAA
41883 AATAAATTGAATCTCCAA
1 AATAAATTGAATCTCCAA
41901 TAAGTTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (19 bp):
AATAAATTGAATCTCCAAA
Found at i:53658 original size:20 final size:21
Alignment explanation
Indices: 53635--53679 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
53625 CATTATATGT
**
53635 ATATTTATGAATAT-ATAAAA
1 ATATTTAACAATATAATAAAA
53655 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
53676 ATAT
1 ATAT
53680 CACTAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:54597 original size:20 final size:19
Alignment explanation
Indices: 54572--54608 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
54562 TACTAGTTTG
*
54572 TTTTTTTTCTTTTTCTGTA
1 TTTTTTTTCGTTTTCTGTA
54591 TTTTTTTTCGTTTTCTGT
1 TTTTTTTTCGTTTTCTGT
54609 TTCTGTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.11, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTTTTTCGTTTTCTGTA
Found at i:54624 original size:25 final size:25
Alignment explanation
Indices: 54576--54624 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
54566 AGTTTGTTTT
* * *
54576 TTTTCTTTTTCTGTATTTTTTTTCG
1 TTTTCTGTTTCTGTATCTTCTTTCG
*
54601 TTTTCTGTTTCTGTCTCTTCTTTC
1 TTTTCTGTTTCTGTATCTTCTTTC
54625 TATCTCTCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.02, C:0.18, G:0.08, T:0.71
Consensus pattern (25 bp):
TTTTCTGTTTCTGTATCTTCTTTCG
Found at i:55114 original size:3 final size:3
Alignment explanation
Indices: 55106--55211 Score: 151
Period size: 3 Copynumber: 35.7 Consensus size: 3
55096 TTAATATATT
* * *
55106 TAA TAA TAA -AA TAA TAA TAA TAA TAA AAA TAA AAA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
55153 TAA TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
55201 TAA TAA TAA TA
1 TAA TAA TAA TA
55212 TGGATAAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
2 2 0.02
3 88 0.98
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:58191 original size:36 final size:36
Alignment explanation
Indices: 58138--58216 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 36
58128 GTTCCTAATA
*
58138 GGTTAATAATTTTAATGTTACTCATAGGACATCAAT
1 GGTTAATAATGTTAATGTTACTCATAGGACATCAAT
* * *
58174 GGATTAATAA-GTTAATGTTATTCATATGACATTAAT
1 GG-TTAATAATGTTAATGTTACTCATAGGACATCAAT
58210 GGTTAAT
1 GGTTAAT
58217 TTATGCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 5 0.13
36 26 0.68
37 7 0.18
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.41
Consensus pattern (36 bp):
GGTTAATAATGTTAATGTTACTCATAGGACATCAAT
Found at i:70858 original size:5 final size:5
Alignment explanation
Indices: 70728--70957 Score: 288
Period size: 5 Copynumber: 46.4 Consensus size: 5
70718 TTGTTATCTG
* * * * * * * * *
70728 TATAA TACAA TACAA TACAA TACAA TACAA TACAA TACAA TACAA TACAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * * *
70778 TACAA TATAA TACAA TACAA TACAA TA-CA -ATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
70826 TATAA TATAA TATAA TATAA TATAA TATAATA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TAT-A-A TATAA TATAA TATAA TATAA
70878 TATAA TATAA TATAA TATAA TATAA TAT-A -ATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
70926 TATAA TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TATAA TA
70958 ATATATATAC
Statistics
Matches: 214, Mismatches: 5, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
3 3 0.01
4 4 0.02
5 201 0.94
6 2 0.01
7 4 0.02
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (5 bp):
TATAA
Found at i:80174 original size:2 final size:2
Alignment explanation
Indices: 80167--80191 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80157 CTAAATATGT
80167 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80192 GGTAAGGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80550 original size:39 final size:40
Alignment explanation
Indices: 80487--80569 Score: 100
Period size: 39 Copynumber: 2.1 Consensus size: 40
80477 TATTATATAG
* **
80487 TTTTGAAAACGGTATATAATATATAGT-TTTTTTGAAAACA
1 TTTTGAAAACGATATATAATATATA-TAGGTTTTGAAAACA
80527 TTTTGAAAAC-ATATAT-ATAATATATAGGTTTTGAAAACA
1 TTTTGAAAACGATATATAAT-ATATATAGGTTTTGAAAACA
80566 TTTT
1 TTTT
80570 TTATTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
38 3 0.08
39 25 0.66
40 10 0.26
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (40 bp):
TTTTGAAAACGATATATAATATATATAGGTTTTGAAAACA
Found at i:81736 original size:23 final size:23
Alignment explanation
Indices: 81671--81743 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 23
81661 GTCCTTTAAA
*
81671 TTTTTAGTTGTTCATTTTTTTTC
1 TTTTTAGTTATTCATTTTTTTTC
* * *
81694 TTTTTAACTTTAGT-ATTTTTTATTT
1 TTTTT-A-GTTATTCATTTTTT-TTC
81719 TTTTTAGTTATTCATTTTTTCTTC
1 TTTTTAGTTATTCATTTTTT-TTC
81743 T
1 T
81744 CCTTTTAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
23 9 0.24
24 19 0.50
25 10 0.26
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTTTAGTTATTCATTTTTTTTC
Found at i:81773 original size:51 final size:48
Alignment explanation
Indices: 81671--81775 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 48
81661 GTCCTTTAAA
* *
81671 TTTTTAGTTGTTCATTTTTTTTCTTTTTAACTTTAGTATTTTTTATTT
1 TTTTTAGTTATTCATTTTTTTTCTTTTTAACTTTAGCATTTTTTATTT
*
81719 TTTTTAGTTATTCATTTTTTCTTCTCCTTTTAATTTTAGCATTTTTT-TTAT
1 TTTTTAGTTATTCATTTTTT-TTCT--TTTTAACTTTAGCATTTTTTATT-T
81770 TTTTTA
1 TTTTTA
81776 TTTGTTTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
48 19 0.38
49 4 0.08
50 2 0.04
51 25 0.50
ACGTcount: A:0.15, C:0.09, G:0.05, T:0.71
Consensus pattern (48 bp):
TTTTTAGTTATTCATTTTTTTTCTTTTTAACTTTAGCATTTTTTATTT
Found at i:81802 original size:19 final size:19
Alignment explanation
Indices: 81759--81802 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
81749 TAATTTTAGC
* *
81759 ATTTTTTTTATTTTTTATT
1 ATTTTTTTTACTTCTTATT
81778 -TGTTTTTTTACTTCTTATT
1 AT-TTTTTTTACTTCTTATT
81797 ATTTTT
1 ATTTTT
81803 ATTTTACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 1 0.05
19 19 0.90
20 1 0.05
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (19 bp):
ATTTTTTTTACTTCTTATT
Found at i:81875 original size:4 final size:4
Alignment explanation
Indices: 81856--81934 Score: 56
Period size: 4 Copynumber: 19.0 Consensus size: 4
81846 TCTCCCTTTG
*
81856 ATTT ATTT AATATT ATTT ATTT AATATT ATTT ATTTT TTTT ATTT -TTT
1 ATTT ATTT -AT-TT ATTT ATTT -AT-TT ATTT A-TTT ATTT ATTT ATTT
* *
81904 CTTT GATTT ATTT A-AT ATTT ATTT A-TT ATTT
1 ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT
81935 CTTATCTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
3 8 0.13
4 35 0.57
5 14 0.23
6 4 0.07
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:81875 original size:14 final size:14
Alignment explanation
Indices: 81856--81930 Score: 77
Period size: 14 Copynumber: 5.5 Consensus size: 14
81846 TCTCCCTTTG
81856 ATTTATTTAATATT
1 ATTTATTTAATATT
81870 ATTTATTTAATATT
1 ATTTATTTAATATT
* *
81884 ATTTATTT-TTTTT
1 ATTTATTTAATATT
*
81897 ATTT-TTT-CT-TT
1 ATTTATTTAATATT
81908 GATTTATTTAATATTT
1 -ATTTATTTAATA-TT
81924 ATTTATT
1 ATTTATT
81931 ATTTCTTATC
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
11 2 0.04
12 8 0.15
13 10 0.19
14 23 0.44
15 7 0.13
16 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.71
Consensus pattern (14 bp):
ATTTATTTAATATT
Found at i:83344 original size:17 final size:19
Alignment explanation
Indices: 83318--83354 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
83308 AAATCAACTA
83318 TTAAATAAATAAATT-TAT
1 TTAAATAAATAAATTATAT
83336 TTAAA-AAATAAATTATAT
1 TTAAATAAATAAATTATAT
83354 T
1 T
83355 ATTATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAATAAATAAATTATAT
Found at i:85078 original size:4 final size:4
Alignment explanation
Indices: 85069--85103 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
85059 TTCAACTATG
85069 TATT TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TAT
85104 ACATGCATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:102160 original size:30 final size:30
Alignment explanation
Indices: 102124--102180 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
102114 GTTGCCATAA
102124 GCAACCTTG-ATGTGGTAAATGGAAGTGTAG
1 GCAACC-TGAATGTGGTAAATGGAAGTGTAG
102154 GCAACCTGAATGTGGTAAATGGAAGTG
1 GCAACCTGAATGTGGTAAATGGAAGTG
102181 CAAGTAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.32, C:0.11, G:0.33, T:0.25
Consensus pattern (30 bp):
GCAACCTGAATGTGGTAAATGGAAGTGTAG
Found at i:124490 original size:42 final size:40
Alignment explanation
Indices: 124414--124509 Score: 158
Period size: 42 Copynumber: 2.4 Consensus size: 40
124404 TCTTCCAAAA
124414 TAATTA-TTTATAAAAAAAAATTCATTCAATAGCATGATT
1 TAATTATTTTATAAAAAAAAATTCATTCAATAGCATGATT
*
124453 TAATTATTTTATAAAACAAAATTTTCATTCAATAGCATGATT
1 TAATTATTTTATAAAA-AAAA-ATTCATTCAATAGCATGATT
124495 TAATTATTTTATAAA
1 TAATTATTTTATAAA
124510 TAGAATTATA
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
39 6 0.11
40 9 0.17
41 4 0.08
42 34 0.64
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (40 bp):
TAATTATTTTATAAAAAAAAATTCATTCAATAGCATGATT
Found at i:125165 original size:39 final size:38
Alignment explanation
Indices: 125099--125321 Score: 295
Period size: 39 Copynumber: 6.1 Consensus size: 38
125089 ACCATGAAGA
* *
125099 TCATAATAGTCGAAGTACCAACTCTTGTGCTGAATTTG
1 TCATAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
*
125137 TCTTAACAGTCAAAAGTACCAACTCTTGTGCTGAATTTG
1 TCATAACAGTC-AAAGTACCAACTCTTGTGCTGAATTTG
125176 TCATAACAGTC-----ACCAACTCTTGTGCTGAATTTG
1 TCATAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
* *
125209 TCATAACAGTC-----ACCAACTCTTCTGCTGAGTTTG
1 TCATAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
*
125242 TCATAACAGTCAAAAGTACCAATTCTTGTGCTGAATTTG
1 TCATAACAGTC-AAAGTACCAACTCTTGTGCTGAATTTG
*
125281 TCGTAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
1 TCATAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
125319 TCA
1 TCA
125322 ACTTAATCCT
Statistics
Matches: 166, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
33 64 0.39
38 37 0.22
39 65 0.39
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (38 bp):
TCATAACAGTCAAAGTACCAACTCTTGTGCTGAATTTG
Found at i:125196 original size:33 final size:34
Alignment explanation
Indices: 125115--125321 Score: 229
Period size: 33 Copynumber: 5.7 Consensus size: 34
125105 TAGTCGAAGT
*
125115 ACCAACTCTTGTGCTGAATTTGTCTTAACAGTCAAAA
1 ACCAACTCTTGTGCTGAATTTGTCATAACAGTC---A
125152 GTACCAACTCTTGTGCTGAATTTGTCATAACAGTC-
1 --ACCAACTCTTGTGCTGAATTTGTCATAACAGTCA
125187 ACCAACTCTTGTGCTGAATTTGTCATAACAGTC-
1 ACCAACTCTTGTGCTGAATTTGTCATAACAGTCA
* *
125220 ACCAACTCTTCTGCTGAGTTTGTCATAACAGTCAAAA
1 ACCAACTCTTGTGCTGAATTTGTCATAACAGTC---A
* *
125257 GTACCAATTCTTGTGCTGAATTTGTCGTAACAGTCAAA
1 --ACCAACTCTTGTGCTGAATTTGTCATAACAGTC--A
125295 GTACCAACTCTTGTGCTGAATTTGTCA
1 --ACCAACTCTTGTGCTGAATTTGTCA
125322 ACTTAATCCT
Statistics
Matches: 153, Mismatches: 9, Indels: 13
0.87 0.05 0.07
Matches are distributed among these distances:
33 64 0.42
38 28 0.18
39 61 0.40
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (34 bp):
ACCAACTCTTGTGCTGAATTTGTCATAACAGTCA
Found at i:129122 original size:20 final size:20
Alignment explanation
Indices: 129093--129133 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
129083 GAGTAATCAT
*
129093 TTTTATTTAATAAAAT-TAAA
1 TTTTAATTAA-AAAATATAAA
129113 TTTTAATTAAAAAATATAAA
1 TTTTAATTAAAAAATATAAA
129133 T
1 T
129134 AAAGAAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTAATTAAAAAATATAAA
Found at i:135860 original size:27 final size:26
Alignment explanation
Indices: 135803--135860 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
135793 GTTTGATGAA
**
135803 AAATAAATGTTTAAATTATATTTTTT
1 AAATAAATGTTTAAATTATATTTCAT
* *
135829 AAATAAATATTTTAAATTTTATTTCAT
1 AAATAAAT-GTTTAAATTATATTTCAT
*
135856 CAATA
1 AAATA
135861 CTATGCTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (26 bp):
AAATAAATGTTTAAATTATATTTCAT
Found at i:137128 original size:26 final size:26
Alignment explanation
Indices: 137092--137151 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
137082 AACAATCCAA
137092 ACAGCTCCAGAATCTATATTTGCCGC
1 ACAGCTCCAGAATCTATATTTGCCGC
*
137118 ACAGCTCCAGAATCTATATTTTCCGC
1 ACAGCTCCAGAATCTATATTTGCCGC
137144 ACAGCTCC
1 ACAGCTCC
137152 CTGGACAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (26 bp):
ACAGCTCCAGAATCTATATTTGCCGC
Found at i:140074 original size:17 final size:17
Alignment explanation
Indices: 140054--140096 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
140044 ATGATAACTT
140054 AAACAAATTAATAATTA
1 AAACAAATTAATAATTA
** *
140071 AAACTTATTAATAATTT
1 AAACAAATTAATAATTA
140088 AAACAAATT
1 AAACAAATT
140097 TTAACATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
AAACAAATTAATAATTA
Found at i:143874 original size:57 final size:57
Alignment explanation
Indices: 143755--143878 Score: 142
Period size: 57 Copynumber: 2.2 Consensus size: 57
143745 ACAAATTAAC
* * * * *
143755 GAACATAAACGAACGGATATAAATGAACATAAACTAACACAATAAACAAACGTAAAC
1 GAACATAAACAAACGAATATAAACGAACATAAACTAACACAATAAACAAACATAAAA
* * **
143812 GAACATAAACAAATGAATGTAAACGAACATAAA-TGAACACAATAAATGAACATAAAA
1 GAACATAAACAAACGAATATAAACGAACATAAACT-AACACAATAAACAAACATAAAA
*
143869 TAACATAAAC
1 GAACATAAAC
143879 GAACCTGCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
56 1 0.02
57 55 0.98
ACGTcount: A:0.60, C:0.15, G:0.10, T:0.15
Consensus pattern (57 bp):
GAACATAAACAAACGAATATAAACGAACATAAACTAACACAATAAACAAACATAAAA
Found at i:143942 original size:23 final size:23
Alignment explanation
Indices: 143831--143945 Score: 76
Period size: 23 Copynumber: 5.1 Consensus size: 23
143821 CAAATGAATG
* **
143831 TAAACGAACATAAATGAACACAA
1 TAAATGAACATAAACAAACACAA
*
143854 TAAATGAACATAAA-ATA-AC-A
1 TAAATGAACATAAACAAACACAA
* * ** * *
143874 TAAACGAACCTGCATAAACATAA
1 TAAATGAACATAAACAAACACAA
* *
143897 CAAATGAACATAATCAAACACAA
1 TAAATGAACATAAACAAACACAA
*
143920 TAAATGAACGTAAAC-AACAACAA
1 TAAATGAACATAAACAAAC-ACAA
143943 TAA
1 TAA
143946 CCACATAAAA
Statistics
Matches: 68, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
20 11 0.16
21 4 0.06
22 5 0.07
23 48 0.71
ACGTcount: A:0.60, C:0.17, G:0.07, T:0.16
Consensus pattern (23 bp):
TAAATGAACATAAACAAACACAA
Found at i:144171 original size:37 final size:37
Alignment explanation
Indices: 144127--144199 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 37
144117 ATTGAATATA
*
144127 AAAGAACAAATACAGACATAAATGAACAAACATAAAT
1 AAAGAACAAACACAGACATAAATGAACAAACATAAAT
* * * * *
144164 AAAGAACATACACGGACATCAATGGACGAACATAAA
1 AAAGAACAAACACAGACATAAATGAACAAACATAAA
144200 CGAACATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.59, C:0.16, G:0.12, T:0.12
Consensus pattern (37 bp):
AAAGAACAAACACAGACATAAATGAACAAACATAAAT
Found at i:144214 original size:24 final size:24
Alignment explanation
Indices: 144167--144214 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
144157 CATAAATAAA
* * * *
144167 GAACATACACGGACATCAATGGAC
1 GAACATAAACGAACATAAAAGGAC
144191 GAACATAAACGAACATAAAAGGAC
1 GAACATAAACGAACATAAAAGGAC
144215 ATCAATGGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.21, G:0.19, T:0.10
Consensus pattern (24 bp):
GAACATAAACGAACATAAAAGGAC
Found at i:144215 original size:34 final size:34
Alignment explanation
Indices: 144162--144234 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
144152 ACAAACATAA
* *
144162 ATAAA-GAACATACACGGACATCAATGGACGAAC
1 ATAAACGAACATAAAAGGACATCAATGGACGAAC
144195 ATAAACGAACATAAAAGGACATCAATGGACGAAC
1 ATAAACGAACATAAAAGGACATCAATGGACGAAC
144229 ATAAAC
1 ATAAAC
144235 AAACGGATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
33 5 0.14
34 32 0.86
ACGTcount: A:0.52, C:0.19, G:0.16, T:0.12
Consensus pattern (34 bp):
ATAAACGAACATAAAAGGACATCAATGGACGAAC
Found at i:153495 original size:20 final size:20
Alignment explanation
Indices: 153472--153525 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
153462 CAACGCGAAC
153472 TCCAATTTCGCAACCCAGTT
1 TCCAATTTCGCAACCCAGTT
153492 TCCAATTTCGCAACCCAGTT
1 TCCAATTTCGCAACCCAGTT
153512 TCCAATTTCGCAAC
1 TCCAATTTCGCAAC
153526 ACGAATATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.35, G:0.09, T:0.30
Consensus pattern (20 bp):
TCCAATTTCGCAACCCAGTT
Found at i:153630 original size:40 final size:41
Alignment explanation
Indices: 153575--153686 Score: 133
Period size: 40 Copynumber: 2.8 Consensus size: 41
153565 TGCGATTTTC
* * *
153575 CAAATTCACAACGCGAATCTGT-AAA-TCGCAACACAGAAGT
1 CAAATTCGCAACGCGAAT-AGTCAAATTCGCAACACAAAAGT
* *
153615 CAAATTCGTAACGCG-ATAGTCAAATTCGCAACACAAAATT
1 CAAATTCGCAACGCGAATAGTCAAATTCGCAACACAAAAGT
*
153655 CAAATTCGCAATGCGAA-AGTCAAATTCGCAAC
1 CAAATTCGCAACGCGAATAGTCAAATTCGCAAC
153687 GTGAATAGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.03
39 5 0.08
40 54 0.87
41 1 0.02
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (41 bp):
CAAATTCGCAACGCGAATAGTCAAATTCGCAACACAAAAGT
Found at i:153637 original size:20 final size:20
Alignment explanation
Indices: 153611--153705 Score: 102
Period size: 20 Copynumber: 4.8 Consensus size: 20
153601 CGCAACACAG
*
153611 AAGTCAAATTCGTAACGCGA
1 AAGTCAAATTCGCAACGCGA
* * *
153631 TAGTCAAATTCGCAACACAA
1 AAGTCAAATTCGCAACGCGA
* *
153651 AATTCAAATTCGCAATGCGA
1 AAGTCAAATTCGCAACGCGA
*
153671 AAGTCAAATTCGCAACGTGA
1 AAGTCAAATTCGCAACGCGA
*
153691 ATAGT-AAAATCGCAA
1 A-AGTCAAATTCGCAA
153706 TGAATCTATA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 58 0.95
21 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (20 bp):
AAGTCAAATTCGCAACGCGA
Found at i:154014 original size:20 final size:20
Alignment explanation
Indices: 153990--154106 Score: 137
Period size: 20 Copynumber: 5.8 Consensus size: 20
153980 CGCAACACAG
*
153990 AAGTCAAATTCCCAACGCGA
1 AAGTCAAATTCGCAACGCGA
* * *
154010 TAGTCAAATTC-CAAACACAA
1 AAGTCAAATTCGC-AACGCGA
154030 AAGTCAAATTCGCAACGCGA
1 AAGTCAAATTCGCAACGCGA
* * *
154050 TAGTCAAATTCGCAACACAA
1 AAGTCAAATTCGCAACGCGA
*
154070 AAGTCAAATTCGCAACGCGC
1 AAGTCAAATTCGCAACGCGA
*
154090 AAGTTAAATTCGCAACG
1 AAGTCAAATTCGCAACG
154107 TGAATAGTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
19 1 0.01
20 79 0.98
21 1 0.01
ACGTcount: A:0.42, C:0.26, G:0.15, T:0.18
Consensus pattern (20 bp):
AAGTCAAATTCGCAACGCGA
Found at i:154038 original size:40 final size:40
Alignment explanation
Indices: 153979--154105 Score: 195
Period size: 40 Copynumber: 3.2 Consensus size: 40
153969 TTCATATAAA
* *
153979 TCGCAACACAGAAGTCAAATTCCCAACGCGATAGTCAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACGCGATAGTCAAAT
154019 TC-CAAACACAAAAGTCAAATTCGCAACGCGATAGTCAAAT
1 TCGC-AACACAAAAGTCAAATTCGCAACGCGATAGTCAAAT
*
154059 TCGCAACACAAAAGTCAAATTCGCAACGCGCA-AGTTAAAT
1 TCGCAACACAAAAGTCAAATTCGCAACGCG-ATAGTCAAAT
154099 TCGCAAC
1 TCGCAAC
154106 GTGAATAGTA
Statistics
Matches: 81, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 78 0.96
41 2 0.02
ACGTcount: A:0.42, C:0.27, G:0.14, T:0.17
Consensus pattern (40 bp):
TCGCAACACAAAAGTCAAATTCGCAACGCGATAGTCAAAT
Found at i:154117 original size:20 final size:21
Alignment explanation
Indices: 153991--154180 Score: 135
Period size: 20 Copynumber: 9.4 Consensus size: 21
153981 GCAACACAGA
* *
153991 AGTCAAATTCCCAACGCG-AT
1 AGTCAAATTCGCAACGTGAAT
** *
154011 AGTCAAATTC-CAAAC-ACAAA
1 AGTCAAATTCGC-AACGTGAAT
*
154031 AGTCAAATTCGCAACGCG-AT
1 AGTCAAATTCGCAACGTGAAT
** *
154051 AGTCAAATTCGCAAC-ACAAA
1 AGTCAAATTCGCAACGTGAAT
* *
154071 AGTCAAATTCGCAACGCGCA-
1 AGTCAAATTCGCAACGTGAAT
*
154091 AGTTAAATTCGCAACGTGAAT
1 AGTCAAATTCGCAACGTGAAT
** *
154112 AGT-AAAAGCGCAACATGAAT
1 AGTCAAATTCGCAACGTGAAT
* * *
154132 AGTAAAAATCGCAATGTGAAT
1 AGTCAAATTCGCAACGTGAAT
*
154153 AGT-AAAATCGCAACGTGAAT
1 AGTCAAATTCGCAACGTGAAT
*
154173 AGTGAAAT
1 AGTCAAAT
154181 AACAACAAAT
Statistics
Matches: 138, Mismatches: 23, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
19 1 0.01
20 112 0.81
21 25 0.18
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (21 bp):
AGTCAAATTCGCAACGTGAAT
Found at i:154543 original size:21 final size:21
Alignment explanation
Indices: 154519--154558 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
154509 TTACCATTTG
154519 AAATTCGCAATGCGATTTTTT
1 AAATTCGCAATGCGATTTTTT
**
154540 AAATTCGCGTTGCGATTTT
1 AAATTCGCAATGCGATTTT
154559 ACTATTCACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (21 bp):
AAATTCGCAATGCGATTTTTT
Found at i:154581 original size:21 final size:21
Alignment explanation
Indices: 154529--154637 Score: 132
Period size: 21 Copynumber: 5.2 Consensus size: 21
154519 AAATTCGCAA
* *
154529 TGCGATTTTTTA-AATTCGCGT
1 TGCGA-TTTTTACTATTCACGT
154550 TGCGA-TTTTACTATTCACGT
1 TGCGATTTTTACTATTCACGT
*
154570 TGCGATTTTTACTATTCACAT
1 TGCGATTTTTACTATTCACGT
* *
154591 TGCGATTTTTACTATTTATGT
1 TGCGATTTTTACTATTCACGT
* *
154612 TGCGAATTTTACTATTCACAT
1 TGCGATTTTTACTATTCACGT
154633 TGCGA
1 TGCGA
154638 AATTAGAAAC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
19 5 0.07
20 12 0.16
21 59 0.78
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.47
Consensus pattern (21 bp):
TGCGATTTTTACTATTCACGT
Found at i:162142 original size:21 final size:22
Alignment explanation
Indices: 162096--162145 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
162086 TATAATTATG
* *
162096 AATTATTTAAAAGTTTAAATGTA
1 AATTATTTAAAAG-TAAAAGGTA
162119 AATTATTTAAAA-TAAAAGGTA
1 AATTATTTAAAAGTAAAAGGTA
162140 AATTAT
1 AATTAT
162146 ACCAATGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
23 12 0.48
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (22 bp):
AATTATTTAAAAGTAAAAGGTA
Found at i:162742 original size:27 final size:25
Alignment explanation
Indices: 162712--162772 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
162702 AATAAATTAA
162712 TTTTACATCTTAACATTAAAAAATAT-
1 TTTTA-ATCTTAAC-TTAAAAAATATG
* **
162738 TTTTTATCTTAACTTATTAAATATG
1 TTTTAATCTTAACTTAAAAAATATG
*
162763 TTTTATTCTT
1 TTTTAATCTT
162773 TTTGTAACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 9 0.31
25 16 0.55
26 4 0.14
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTTAATCTTAACTTAAAAAATATG
Found at i:162766 original size:25 final size:25
Alignment explanation
Indices: 162718--162768 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
162708 TTAATTTTAC
162718 ATCTTAACATTAAAAAATATTTTTT
1 ATCTTAACATTAAAAAATATTTTTT
** *
162743 ATCTTAAC-TTATTAAATATGTTTT
1 ATCTTAACATTAAAAAATATTTTTT
162767 AT
1 AT
162769 TCTTTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (25 bp):
ATCTTAACATTAAAAAATATTTTTT
Found at i:162788 original size:29 final size:29
Alignment explanation
Indices: 162756--162873 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
162746 TTAACTTATT
*
162756 AAATATGTTTTATTCTT-TTTGTAACCTAA
1 AAATATATTTTATTCTTATTT-TAACCTAA
*
162785 AAATATATTTTATTCTTATTTTAATCTAA
1 AAATATATTTTATTCTTATTTTAACCTAA
** * **
162814 AACATATATTTTAACCTTATCTTAAATTAA
1 AA-ATATATTTTATTCTTATTTTAACCTAA
* * * *
162844 AACTATAATTTATTCTTATCTTAACTTAA
1 AAATATATTTTATTCTTATTTTAACCTAA
162873 A
1 A
162874 TATTTATATT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
29 48 0.64
30 27 0.36
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (29 bp):
AAATATATTTTATTCTTATTTTAACCTAA
Found at i:163144 original size:23 final size:23
Alignment explanation
Indices: 163089--163156 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 23
163079 ATATTTTAAA
*
163089 TTTAAGATAAAAATAAAATATATT
1 TTTAAG-TTAAAATAAAATATATT
*
163113 TTTGTAGTTAAAATAAAATATATT
1 TTT-AAGTTAAAATAAAATATATT
*
163137 TTTAAGTTAATATAATAATA
1 TTTAAGTTAAAATAA-AATA
163157 AAAAATTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.26
24 26 0.68
25 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (23 bp):
TTTAAGTTAAAATAAAATATATT
Found at i:163626 original size:16 final size:17
Alignment explanation
Indices: 163597--163629 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
163587 ATATGGAGTC
163597 TTTTAGAAATTTAAATT
1 TTTTAGAAATTTAAATT
*
163614 TTTTATAAA-TTAAATT
1 TTTTAGAAATTTAAATT
163630 AATGATGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTAGAAATTTAAATT
Found at i:164787 original size:2 final size:2
Alignment explanation
Indices: 164780--164811 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
164770 CTCATCTATT
164780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
164812 ATAATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:172387 original size:30 final size:30
Alignment explanation
Indices: 172353--172414 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
172343 TTATCAAGAG
*
172353 TTTGTTCGGAATCTTAATCAATAATCACTC
1 TTTGTTCAGAATCTTAATCAATAATCACTC
*
172383 TTTGTTCAGAATCTTAATCGATAATCACTC
1 TTTGTTCAGAATCTTAATCAATAATCACTC
172413 TT
1 TT
172415 GTGCTTGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (30 bp):
TTTGTTCAGAATCTTAATCAATAATCACTC
Found at i:177299 original size:21 final size:23
Alignment explanation
Indices: 177265--177308 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
177255 TGGTTTTTAT
177265 AAAATTCACTTAAA-A-TCGACA
1 AAAATTCACTTAAACATTCGACA
177286 AAAATTC-CTCTAAACATTCGACA
1 AAAATTCACT-TAAACATTCGACA
177309 TGCTAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.10
21 11 0.55
22 1 0.05
23 6 0.30
ACGTcount: A:0.48, C:0.23, G:0.05, T:0.25
Consensus pattern (23 bp):
AAAATTCACTTAAACATTCGACA
Found at i:177367 original size:37 final size:37
Alignment explanation
Indices: 177312--177392 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
177302 TTCGACATGC
*
177312 TAATATTCTGATATCATCCAATGTTATTTGATGAAGT
1 TAATTTTCTGATATCATCCAATGTTATTTGATGAAGT
177349 TAATTTTCTGATATCATCCAATGTTATTTGATGAAGT
1 TAATTTTCTGATATCATCCAATGTTATTTGATGAAGT
177386 TAATTTT
1 TAATTTT
177393 GAAGTATGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (37 bp):
TAATTTTCTGATATCATCCAATGTTATTTGATGAAGT
Found at i:190490 original size:208 final size:209
Alignment explanation
Indices: 190114--190534 Score: 530
Period size: 208 Copynumber: 2.0 Consensus size: 209
190104 ATTATCCTCT
* *
190114 CATTCCTATGCATTAATTCAGTCAAAATAAACACAATTGAACTCCCAAGATTGTCAGATTCCTGC
1 CATTCATATGCATAAATTCAGTCAAAATAAACACAATTGAACTCCCAAGATTGTCAGATTCCTGC
* * * * * * *
190179 TATAAACAAAAACCAAGCAGAGAAATCATATCTTAAAGCAGACACTCGTAGCAAAATCGCTTCTT
66 TACAAACAAAAACCAACCAAAGAAATCATATCTTAAAGAAGAAACTCATAGCAAAATAGCTTCTT
* *
190244 TTCGAAGTTTATGAGCTATTATCCAAACAAAGAAGGAACTCGGATACATAA-TACTA-TTTCAAC
131 TTCGAAGTTTATGAGCTATTATCCAAACAAAAAAGGAACTCAGATACATAATTACTATTTTCAAC
190307 CATTAAAATAAGGAA
196 CATTAAAA-AAGGAA
* * *
190322 CATTCATATGCATAAATTCAAG-CAAAATCAATACAATT-AGACTCCCAA-AGTTGTCAGATTTC
1 CATTCATATGCATAAATTC-AGTCAAAATAAACACAATTGA-ACTCCCAAGA-TTGTCAGATTCC
* * * *
190384 TGCTACAAACAGAAACCAACCAAATAAATCATGTCTTAAAGAAGAAACTCATAGCAAAATAGTTT
63 TGCTACAAACAAAAACCAACCAAAGAAATCATATCTTAAAGAAGAAACTCATAGCAAAATAGCTT
* * *
190449 CTTTTCGAAGTTT-TTAGGTATTTTCCAAACAAAAAAAGGAACTCAGATACATAATTGTACTATT
128 CTTTTCGAAGTTTATGAGCTATTATCCAAAC-AAAAAAGGAACTCAGATACATAA-T-TACTATT
* *
190513 TTTAACCATTAACAAAGGAA
190 TTCAACCATTAAAAAAGGAA
190533 CA
1 CA
190535 ATTCTTCTCA
Statistics
Matches: 182, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
207 16 0.09
208 138 0.76
209 2 0.01
211 13 0.07
212 13 0.07
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (209 bp):
CATTCATATGCATAAATTCAGTCAAAATAAACACAATTGAACTCCCAAGATTGTCAGATTCCTGC
TACAAACAAAAACCAACCAAAGAAATCATATCTTAAAGAAGAAACTCATAGCAAAATAGCTTCTT
TTCGAAGTTTATGAGCTATTATCCAAACAAAAAAGGAACTCAGATACATAATTACTATTTTCAAC
CATTAAAAAAGGAA
Found at i:191741 original size:21 final size:25
Alignment explanation
Indices: 191725--191782 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
191715 TAATAATTTT
191725 ATTTTAATAA-TATATAATATTATA
1 ATTTTAATAACTATATAATATTATA
*
191749 ATTTTAATAACTATAT-ATAATA-A
1 ATTTTAATAACTATATAATATTATA
191772 ATTATTAATAA
1 ATT-TTAATAA
191783 AATTAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 4 0.13
24 22 0.71
25 5 0.16
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTTTAATAACTATATAATATTATA
Found at i:191752 original size:24 final size:23
Alignment explanation
Indices: 191725--191791 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
191715 TAATAATTTT
191725 ATTTTAATAATATATAATATTATA
1 ATTTTAATAATATATAATATTA-A
*
191749 ATTTTAATAACTATAT-ATAATAA
1 ATTTTAATAA-TATATAATATTAA
*
191772 ATTATTAATAAAAT-TAATAT
1 ATT-TTAATAATATATAATAT
191792 ATTTATTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 1 0.03
23 9 0.24
24 22 0.59
25 5 0.14
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTTAATAATATATAATATTAA
Found at i:191946 original size:16 final size:16
Alignment explanation
Indices: 191858--191965 Score: 56
Period size: 16 Copynumber: 6.1 Consensus size: 16
191848 CCTTAAAATA
*
191858 TAATATCTAA-TATTT
1 TAATATATAATTATTT
*
191873 TAATAATATTATTATTT
1 TAAT-ATATAATTATTT
*
191890 TAATAAATAATTAATATAATTAA
1 TAAT--AT-A-TAAT-T-ATT-T
191913 TAATATATTAGTATTATTT
1 TAATATA-TA--ATTATTT
*
191932 TAATATATAATTATTA
1 TAATATATAATTATTT
* *
191948 TAATTTATAATAATTT
1 TAATATATAATTATTT
191964 TA
1 TA
191966 TTTTAATAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 19
0.73 0.09 0.19
Matches are distributed among these distances:
15 4 0.05
16 25 0.34
17 9 0.12
18 5 0.07
19 8 0.11
20 10 0.14
21 4 0.05
22 5 0.07
23 4 0.05
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (16 bp):
TAATATATAATTATTT
Found at i:191970 original size:16 final size:18
Alignment explanation
Indices: 191924--191982 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 18
191914 AATATATTAG
191924 TATTATTTTAATATATAAT
1 TATTATTTT-ATATATAAT
191943 TATTATAATTTATA-ATAAT
1 TATTAT--TTTATATATAAT
*
191962 T-TTATTTTA-ATA-AAA
1 TATTATTTTATATATAAT
191977 TATTAT
1 TATTAT
191983 AATCTTAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 4 0.11
16 9 0.26
18 4 0.11
19 12 0.34
20 3 0.09
21 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTATTTTATATATAAT
Found at i:192106 original size:21 final size:20
Alignment explanation
Indices: 192072--192110 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
192062 TTCTAATATT
*
192072 TTAAAAATATTATTATTTTG
1 TTAAAAATAATATTATTTTG
192092 TTAATAAATAATATTATTT
1 TTAA-AAATAATATTATTT
192111 ATAGTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TTAAAAATAATATTATTTTG
Found at i:193072 original size:101 final size:102
Alignment explanation
Indices: 192897--193090 Score: 284
Period size: 101 Copynumber: 1.9 Consensus size: 102
192887 AATTCATACT
* * * * * *
192897 ATAAAAAAATGTAGCACTTAACACATATTTACACCGGTGTAAGTGAATAAAATAAACAAGTGTAG
1 ATAAAAAAATATAGCACTTAACACATACTTACAACGGTGTAAGTAAATAAAATAAAAAAGTGTAA
* *
192962 CATTTAACACATAC-TACACCGGTGTAAATGAATAGA
66 CACTTAACACATACTTACACCAGTGTAAATGAATAGA
*
192998 ATAAAAAATATATA-CACTTAACATATACTTACAACGGTGTAAGTAAATAAAATAAAAAAGTGTA
1 ATAAAAAA-ATATAGCACTTAACACATACTTACAACGGTGTAAGTAAATAAAATAAAAAAGTGTA
193062 ACACTTAACACATACTTACACCAGTGTAA
65 ACACTTAACACATACTTACACCAGTGTAA
193091 GTATGTACAC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 66 0.80
102 16 0.20
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (102 bp):
ATAAAAAAATATAGCACTTAACACATACTTACAACGGTGTAAGTAAATAAAATAAAAAAGTGTAA
CACTTAACACATACTTACACCAGTGTAAATGAATAGA
Found at i:193093 original size:51 final size:51
Alignment explanation
Indices: 192897--193093 Score: 245
Period size: 51 Copynumber: 3.9 Consensus size: 51
192887 AATTCATACT
* * * *
192897 ATAAAAAAATGTAGCACTTAACACATATTTACACCGGTGTAAGTGAATAAA
1 ATAAAAAAGTGTAACACTTAACACATACTTACACCGGTGTAAGTAAATAAA
* * * * * *
192948 ATAAACAAGTGTAGCATTTAACACATAC-TACACCGGTGTAAATGAATAGA
1 ATAAAAAAGTGTAACACTTAACACATACTTACACCGGTGTAAGTAAATAAA
* * *
192998 ATAAAAAA-TATATACACTTAACATATACTTACAACGGTGTAAGTAAATAAA
1 ATAAAAAAGTGTA-ACACTTAACACATACTTACACCGGTGTAAGTAAATAAA
*
193049 ATAAAAAAGTGTAACACTTAACACATACTTACACCAGTGTAAGTA
1 ATAAAAAAGTGTAACACTTAACACATACTTACACCGGTGTAAGTA
193094 TGTACACCTC
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 3 0.02
50 39 0.31
51 79 0.64
52 3 0.02
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (51 bp):
ATAAAAAAGTGTAACACTTAACACATACTTACACCGGTGTAAGTAAATAAA
Found at i:198546 original size:22 final size:22
Alignment explanation
Indices: 198515--198559 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
198505 TTTCACGACA
* * *
198515 TAATCCAAAATCCAAAGGAAAT
1 TAATCAAAAATCAAAAAGAAAT
198537 TAATCAAAAATCAAAAAGAAAT
1 TAATCAAAAATCAAAAAGAAAT
198559 T
1 T
198560 TTCTCTTACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (22 bp):
TAATCAAAAATCAAAAAGAAAT
Found at i:204383 original size:14 final size:14
Alignment explanation
Indices: 204364--204393 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
204354 TTAAGACCTT
*
204364 TCGATTTTAAAATA
1 TCGATTTAAAAATA
204378 TCGATTTAAAAATA
1 TCGATTTAAAAATA
204392 TC
1 TC
204394 TTTGATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (14 bp):
TCGATTTAAAAATA
Found at i:204657 original size:284 final size:289
Alignment explanation
Indices: 204163--204736 Score: 1022
Period size: 282 Copynumber: 2.0 Consensus size: 289
204153 ATAGCCCATC
204163 TTTAACATTTTAACATTTTAATTATTTTTTAAATATATTTATTATTTTTTCATATTCTAAATATT
1 TTTAACATTTTAACATTTTAATTATTTTTTAAATATATTTATTATTTTTTCATATTCTAAATATT
204228 TCAAACTTTTCTTAAAGACAAAAGTAGTTAAATCCTAACCCTTAATTTTAAAACCTTTAATTACT
66 TCAAACTTTTCTTAAAGACAAAAGTAGTTAAATCCTAACCCTTAATTTTAAAACCTTTAATTACT
204293 TTTTTTTCCAATTTACTAACATCATAATCTTATTTTCTACTGTTTTTTTTATTTAGTTATTTTAA
131 TTTTTTTCCAATTTACTAACATCATAATCTTATTTTCTACTGTTTTTTTTATTTAGTTATTTTAA
204358 GACCTTTCGATTTT-AAAATATCGA-TTTAAAAATATCTTTGATTTTTACATTTTAA-TGTTTT-
196 GACCTTTCGATTTTAAAAATATCGATTTTAAAAATATCTTTGATTTTTACATTTTAATTGTTTTA
204419 AAATTAAACAATCTTTACCTCTTTATAGT
261 AAATTAAACAATCTTTACCTCTTTATAGT
* *
204448 TTTAACATTTTTACA-TTTAATTGTTTTTTAAATATA-TT-TTATTTTTTCATATTCTAAATATT
1 TTTAACATTTTAACATTTTAATTATTTTTTAAATATATTTATTATTTTTTCATATTCTAAATATT
204510 TCAAACTTTTCTTAAAAGACAAAA-TAGTTAAATCCTAACCCTTAATTTTAAAACCTTTTAATTA
66 TCAAACTTTTCTT-AAAGACAAAAGTAGTTAAATCCTAACCCTTAATTTTAAAACC-TTTAATTA
204574 CTTTTTTTTCCAATTTTACTAACATCAATAATCTTATTTTCTACTG-TTTTTTTATTTAGTTATT
129 CTTTTTTTTCCAA-TTTACTAACATC-ATAATCTTATTTTCTACTGTTTTTTTTATTTAGTTATT
204638 TTAAGACCTTTCGATTTTAAAAATATCGATTTTAAAAATATCTTTGATTTTTACATTTTAATTGT
192 TTAAGACCTTTCGATTTTAAAAATATCGATTTTAAAAATATCTTTGATTTTTACATTTTAATTGT
*
204703 TTTAAAATTAAACAATCTTTCCCTCTTTATAGT
257 TTTAAAATTAAACAATCTTTACCTCTTTATAGT
204736 T
1 T
204737 CAATTCTAAC
Statistics
Matches: 278, Mismatches: 3, Indels: 13
0.95 0.01 0.04
Matches are distributed among these distances:
282 68 0.24
283 33 0.12
284 68 0.24
285 43 0.15
286 31 0.11
287 6 0.02
288 29 0.10
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (289 bp):
TTTAACATTTTAACATTTTAATTATTTTTTAAATATATTTATTATTTTTTCATATTCTAAATATT
TCAAACTTTTCTTAAAGACAAAAGTAGTTAAATCCTAACCCTTAATTTTAAAACCTTTAATTACT
TTTTTTTCCAATTTACTAACATCATAATCTTATTTTCTACTGTTTTTTTTATTTAGTTATTTTAA
GACCTTTCGATTTTAAAAATATCGATTTTAAAAATATCTTTGATTTTTACATTTTAATTGTTTTA
AAATTAAACAATCTTTACCTCTTTATAGT
Found at i:204668 original size:15 final size:15
Alignment explanation
Indices: 204648--204679 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
204638 TTAAGACCTT
204648 TCGATTTTAAAAATA
1 TCGATTTTAAAAATA
204663 TCGATTTTAAAAATA
1 TCGATTTTAAAAATA
204678 TC
1 TC
204680 TTTGATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (15 bp):
TCGATTTTAAAAATA
Found at i:207372 original size:2 final size:2
Alignment explanation
Indices: 207365--207492 Score: 62
Period size: 2 Copynumber: 60.0 Consensus size: 2
207355 TGTCTATATT
* * * * *
207365 TC TC TC TC TC AT- TC TC TC CC AC TA TC TC TC TC ATG T- TC TC TT
1 TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC TC -TC TC TC TC TC
* *
207407 TA TC TC TC GTAC TC TC TC TC TC TC GTAC TC TC TC TC TC CC TC TC
1 TC TC TC TC -T-C TC TC TC TC TC TC -T-C TC TC TC TC TC TC TC TC
* * *
207451 TC GTAC TC TA TC TC TC TC CC TC TC TC GTAC TC TA TC TC TC TC
1 TC -T-C TC TC TC TC TC TC TC TC TC TC -T-C TC TC TC TC TC TC
207493 ACCCACTCTT
Statistics
Matches: 97, Mismatches: 17, Indels: 24
0.70 0.12 0.17
Matches are distributed among these distances:
1 2 0.02
2 81 0.84
3 10 0.10
4 4 0.04
ACGTcount: A:0.09, C:0.43, G:0.04, T:0.45
Consensus pattern (2 bp):
TC
Found at i:207443 original size:22 final size:22
Alignment explanation
Indices: 207418--207490 Score: 110
Period size: 22 Copynumber: 3.2 Consensus size: 22
207408 ATCTCTCGTA
*
207418 CTCTCTCTCTCTCGTACTCTCT
1 CTCTCCCTCTCTCGTACTCTCT
207440 CTCTCCCTCTCTCGTACTCTATCT
1 CTCTCCCTCTCTCGTACTC--TCT
*
207464 CTCTCCCTCTCTCGTACTCTAT
1 CTCTCCCTCTCTCGTACTCTCT
207486 CTCTC
1 CTCTC
207491 TCACCCACTC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
22 25 0.53
24 22 0.47
ACGTcount: A:0.07, C:0.47, G:0.04, T:0.42
Consensus pattern (22 bp):
CTCTCCCTCTCTCGTACTCTCT
Found at i:207459 original size:16 final size:16
Alignment explanation
Indices: 207409--207492 Score: 86
Period size: 16 Copynumber: 5.4 Consensus size: 16
207399 GTTCTCTTTA
207409 TCTCTCGTACTCTCTC
1 TCTCTCGTACTCTCTC
207425 TCTCTCGTACTCTCTC
1 TCTCTCGTACTCTCTC
*
207441 TCTC-CCT-CTCTCGTAC
1 TCTCTCGTACTCTC-T-C
* *
207457 TCTATC-T-CTCTCCC
1 TCTCTCGTACTCTCTC
*
207471 TCTCTCGTACTCTATC
1 TCTCTCGTACTCTCTC
207487 TCTCTC
1 TCTCTC
207493 ACCCACTCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
14 11 0.19
15 4 0.07
16 41 0.72
17 1 0.02
ACGTcount: A:0.07, C:0.45, G:0.05, T:0.43
Consensus pattern (16 bp):
TCTCTCGTACTCTCTC
Found at i:207491 original size:24 final size:24
Alignment explanation
Indices: 207418--207492 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
207408 ATCTCTCGTA
*
207418 CTCTCTCTCTCTCGTACTC--TCT
1 CTCTCCCTCTCTCGTACTCTATCT
207440 CTCTCCCTCTCTCGTACTCTATCT
1 CTCTCCCTCTCTCGTACTCTATCT
207464 CTCTCCCTCTCTCGTACTCTATCT
1 CTCTCCCTCTCTCGTACTCTATCT
207488 CTCTC
1 CTCTC
207493 ACCCACTCTT
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
22 18 0.36
24 32 0.64
ACGTcount: A:0.07, C:0.47, G:0.04, T:0.43
Consensus pattern (24 bp):
CTCTCCCTCTCTCGTACTCTATCT
Found at i:207717 original size:20 final size:21
Alignment explanation
Indices: 207681--207720 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
207671 GCCCATTCTC
207681 TCTTTCTCTCTCCCTACTCTA
1 TCTTTCTCTCTCCCTACTCTA
207702 TCTTTCTCTC-CCCTACTCT
1 TCTTTCTCTCTCCCTACTCT
207721 TCGTCTCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.07, C:0.45, G:0.00, T:0.47
Consensus pattern (21 bp):
TCTTTCTCTCTCCCTACTCTA
Found at i:207729 original size:20 final size:19
Alignment explanation
Indices: 207685--207730 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
207675 ATTCTCTCTT
207685 TCTCTCTCCCTACTCTATC
1 TCTCTCTCCCTACTCTATC
*
207704 TTTCTCTCCCCTACTCT-TC
1 TCTCTCT-CCCTACTCTATC
207723 GTCTCTCT
1 -TCTCTCT
207731 TACCCACTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.07, C:0.46, G:0.02, T:0.46
Consensus pattern (19 bp):
TCTCTCTCCCTACTCTATC
Found at i:209435 original size:2 final size:2
Alignment explanation
Indices: 209428--209470 Score: 56
Period size: 2 Copynumber: 22.5 Consensus size: 2
209418 AACGTTTTAT
209428 TA TA TA TA TA T- TA T- TCA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
209468 TA T
1 TA T
209471 TAGTTTTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 3 0.08
2 33 0.89
3 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:209449 original size:18 final size:16
Alignment explanation
Indices: 209425--209472 Score: 64
Period size: 18 Copynumber: 3.0 Consensus size: 16
209415 CATAACGTTT
209425 TATTATATATATATTA
1 TATTATATATATATTA
209441 TTCATTATATATATA-TA
1 -T-ATTATATATATATTA
209458 TA-TATATATATATTA
1 TATTATATATATATTA
209473 GTTTTTTGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.34
15 3 0.10
16 1 0.03
17 3 0.10
18 12 0.41
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATATATATATTA
Found at i:209546 original size:23 final size:21
Alignment explanation
Indices: 209523--209694 Score: 73
Period size: 20 Copynumber: 8.4 Consensus size: 21
209513 AACCTAATAT
209523 TTATTTATATATATATTTTTTA
1 TTATTTATATAT-TATTTTTTA
*
209545 TTATTTTATTATTTCTATTTTATTA
1 TTA-TTTA-TATAT-TATTTT-TTA
209570 TTA-TTAT-TATTATGTTTTTA
1 TTATTTATATATTAT-TTTTTA
*
209590 TTA-TTAT-TTTTCATTTTTTTA
1 TTATTTATATATT-A-TTTTTTA
209611 TT-TTT-T-T-TT-TTTTTTA
1 TTATTTATATATTATTTTTTA
* * * * *
209627 TTTTTTTTTTTTTTTTTTTTA
1 TTATTTATATATTATTTTTTA
* *
209648 TT-TTTTTATTTTA-TTTTTA
1 TTATTTATATATTATTTTTTA
*
209667 TT-TTT-TATTTTATTTTTTTA
1 TTATTTATATATTA-TTTTTTA
*
209687 TTTTTTAT
1 TTATTTAT
209695 TTTTTTATTT
Statistics
Matches: 128, Mismatches: 6, Indels: 32
0.77 0.04 0.19
Matches are distributed among these distances:
16 9 0.07
17 3 0.02
18 8 0.06
19 14 0.11
20 37 0.29
21 28 0.22
22 6 0.05
23 7 0.05
24 10 0.08
25 6 0.05
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.80
Consensus pattern (21 bp):
TTATTTATATATTATTTTTTA
Found at i:209556 original size:3 final size:3
Alignment explanation
Indices: 209542--209597 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
209532 TATATATTTT
209542 TTA TTA TT- TTA TTA TT- TCTA TT- TTA TTA TTA TTA TTA TTA TGT-
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA
209585 TT- TTA TTA TTA TT
1 TTA TTA TTA TTA TT
209598 TTTCATTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 8 0.17
3 37 0.79
4 2 0.04
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:209565 original size:14 final size:12
Alignment explanation
Indices: 209540--209704 Score: 135
Period size: 13 Copynumber: 13.2 Consensus size: 12
209530 TATATATATT
209540 TTTTATTATTTTA
1 TTTT-TTATTTTA
209553 TTATTTCTATTTTA
1 TT-TTT-TATTTTA
209567 TTATTATTATTATTA
1 TT-TT-TTATT-TTA
209582 TGTTTTTATTATTA
1 T-TTTTTATT-TTA
*
209596 TTTTTCATTTT-
1 TTTTTTATTTTA
* *
209607 TTTATTTTTTTTT
1 TTT-TTTATTTTA
209620 TTTTTTATTTT-
1 TTTTTTATTTTA
209631 TTTTTT-TTTT-
1 TTTTTTATTTTA
*
209641 TTTTTTATTTTT
1 TTTTTTATTTTA
209653 TTATTTTATTTTTA
1 TT-TTTTA-TTTTA
209667 TTTTTTATTTTA
1 TTTTTTATTTTA
209679 TTTTTTTATTTT-
1 -TTTTTTATTTTA
*
209691 TTATTT-TTTTA
1 TTTTTTATTTTA
209702 TTT
1 TTT
209705 GTTTTCTTAA
Statistics
Matches: 132, Mismatches: 7, Indels: 28
0.79 0.04 0.17
Matches are distributed among these distances:
10 14 0.11
11 20 0.15
12 22 0.17
13 34 0.26
14 34 0.26
15 7 0.05
16 1 0.01
ACGTcount: A:0.16, C:0.01, G:0.01, T:0.82
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:209575 original size:20 final size:19
Alignment explanation
Indices: 209545--209703 Score: 125
Period size: 20 Copynumber: 8.4 Consensus size: 19
209535 ATATTTTTTA
*
209545 TTATT-TTATTATTTCTATT
1 TTATTATTATT-TTTTTATT
*
209564 TTATTATTATTATTATTATGT
1 TTATTATTATT-TTTTTAT-T
209585 TT-TTATTATTATTTTTCATT
1 TTATTATTATT-TTTTT-ATT
*
209605 TTTTTATT-TTTTTTT-TT
1 TTATTATTATTTTTTTATT
*
209622 TT-TTATT-TTTTTTTTTT
1 TTATTATTATTTTTTTATT
* *
209639 TTTTTTTTATTTTTTTATT
1 TTATTATTATTTTTTTATT
*
209658 TTATTTTTA-TTTTTTATT
1 TTATTATTATTTTTTTATT
* *
209676 TTATTTTTTTATTTTTTATT
1 TTATTATTAT-TTTTTTATT
*
209696 TTTTTATT
1 TTATTATT
209704 TGTTTTCTTA
Statistics
Matches: 122, Mismatches: 9, Indels: 17
0.82 0.06 0.11
Matches are distributed among these distances:
16 12 0.10
17 8 0.07
18 21 0.17
19 27 0.22
20 44 0.36
21 10 0.08
ACGTcount: A:0.16, C:0.01, G:0.01, T:0.82
Consensus pattern (19 bp):
TTATTATTATTTTTTTATT
Found at i:209607 original size:1 final size:1
Alignment explanation
Indices: 209603--209700 Score: 106
Period size: 1 Copynumber: 98.0 Consensus size: 1
209593 TTATTTTTCA
* * * * * *
209603 TTTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTATTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
209668 TTTTTATTTTATTTTTTTATTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
209701 ATTTGTTTTC
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:209614 original size:6 final size:6
Alignment explanation
Indices: 209539--209698 Score: 111
Period size: 6 Copynumber: 26.8 Consensus size: 6
209529 ATATATATAT
* * * * * * *
209539 TTTTTA TTATT- TTATTA TTTCTA -TTTTA TTATTA TTATTA -TTATG
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
209584 TTTTTA TTATTA TTTTTCA TTTTTTTA TTTTT- TTTTT- TTTTTA TTTTT-
1 TTTTTA TTTTTA TTTTT-A --TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
209632 TTTTT- TTTTT- TTTTTA TTTTTT TATTTTA TTTTTA TTTTTTA TTTTATT
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA -TTTTTA TTTT-TA
209681 TTTTTA TTTTTTA TTTTT
1 TTTTTA -TTTTTA TTTTT
209699 TTATTTGTTT
Statistics
Matches: 126, Mismatches: 16, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
5 36 0.29
6 61 0.48
7 23 0.18
8 1 0.01
9 5 0.04
ACGTcount: A:0.16, C:0.01, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:209653 original size:46 final size:45
Alignment explanation
Indices: 209545--209704 Score: 123
Period size: 42 Copynumber: 3.4 Consensus size: 45
209535 ATATTTTTTA
* * *
209545 TTATTTTATTATTTCTATTTTATTATTATTATTATTATGTTTTTATTATT
1 TTATTTTATT-TTTTTATTTT-TTATT-TTTTTATT-TTTTTTTATT-TT
* *
209595 ATT-TTTCATTTTTTTATTTTTTTTTTTTTTTATTTTTTTTT-TTTT
1 -TTATTTTATTTTTTTA-TTTTTTATTTTTTTATTTTTTTTTATTTT
* *
209640 TTTTTTTATTTTTTTA--TTTTATTTTTATT-TTTTATTTTATTTTT
1 TTATTTTATTTTTTTATTTTTTATTTTT-TTATTTTTTTTTA-TTTT
209684 TTATTTTTTATTTTTTTATTT
1 TTA--TTTTATTTTTTTATTT
209705 GTTTTCTTAA
Statistics
Matches: 91, Mismatches: 9, Indels: 21
0.75 0.07 0.17
Matches are distributed among these distances:
42 17 0.19
43 2 0.02
44 8 0.09
45 14 0.15
46 15 0.16
47 6 0.07
48 8 0.09
49 9 0.10
50 10 0.11
51 2 0.02
ACGTcount: A:0.16, C:0.01, G:0.01, T:0.82
Consensus pattern (45 bp):
TTATTTTATTTTTTTATTTTTTATTTTTTTATTTTTTTTTATTTT
Found at i:209704 original size:8 final size:8
Alignment explanation
Indices: 209538--209709 Score: 144
Period size: 8 Copynumber: 21.8 Consensus size: 8
209528 TATATATATA
209538 TTTTTTAT
1 TTTTTTAT
*
209546 TATTTTAT
1 TTTTTTAT
*
209554 TATTTCTAT
1 T-TTTTTAT
*
209563 TTTATTAT
1 TTTTTTAT
*
209571 TATTATTAT
1 T-TTTTTAT
209580 TATGTTTT-T
1 T-T-TTTTAT
* *
209589 ATTATTA-
1 TTTTTTAT
*
209596 TTTTTCAT
1 TTTTTTAT
209604 TTTTTTAT
1 TTTTTTAT
*
209612 TTTTTTTT
1 TTTTTTAT
209620 TTTTTTA-
1 TTTTTTAT
209627 TTTTTT-T
1 TTTTTTAT
209634 TTTTTT-T
1 TTTTTTAT
209641 TTTTTTAT
1 TTTTTTAT
209649 TTTTTTAT
1 TTTTTTAT
209657 TTTATTT-T
1 TTT-TTTAT
*
209665 TATTTT-T
1 TTTTTTAT
*
209672 TATTTTAT
1 TTTTTTAT
209680 TTTTTTA-
1 TTTTTTAT
209687 TTTTTTAT
1 TTTTTTAT
209695 TTTTTTAT
1 TTTTTTAT
209703 TTGTTTT
1 TT-TTTT
209710 CTTAATTTAA
Statistics
Matches: 137, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
7 43 0.31
8 67 0.49
9 24 0.18
10 3 0.02
ACGTcount: A:0.15, C:0.01, G:0.01, T:0.83
Consensus pattern (8 bp):
TTTTTTAT
Found at i:220322 original size:28 final size:29
Alignment explanation
Indices: 220268--220325 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 29
220258 GAGTTGTCTA
220268 ATAAATCTTATGATATATTTGAGGAATTTT
1 ATAAATCTTATGATATATTT-AGGAATTTT
220298 ATAAATCTTATGATATATTT-GGAATTTT
1 ATAAATCTTATGATATATTTAGGAATTTT
220326 TTTATGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 8 0.29
30 20 0.71
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (29 bp):
ATAAATCTTATGATATATTTAGGAATTTT
Found at i:228962 original size:14 final size:14
Alignment explanation
Indices: 228921--229003 Score: 86
Period size: 14 Copynumber: 6.1 Consensus size: 14
228911 TATTAAAATA
228921 ATTTTAAATAATTT
1 ATTTTAAATAATTT
*
228935 A--ATAAGAT-ATTT
1 ATTTTAA-ATAATTT
228947 ATTTTAAATAATTT
1 ATTTTAAATAATTT
228961 ATTTTAAAATAATTT
1 ATTTT-AAATAATTT
*
228976 A--TAAAATAATTT
1 ATTTTAAATAATTT
*
228988 ACTTTAAATAATTT
1 ATTTTAAATAATTT
229002 AT
1 AT
229004 AAAATATGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
12 18 0.32
13 5 0.09
14 24 0.42
15 10 0.18
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (14 bp):
ATTTTAAATAATTT
Done.