Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008882.1 Hibiscus syriacus cultivar Beakdansim tig00112128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93746

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2181--2218
2
18.5
2
94
5
67
47
0
2
50
1.15
4434--4491
20
2.7
20
84
10
71
31
18
22
27
1.97
5444--5533
2
45.5
2
95
2
164
48
0
1
50
1.08
10992--11154
65
2.5
64
84
3
220
26
15
26
30
1.96
11102--11152
19
2.7
19
85
8
70
25
15
35
23
1.94
12131--12174
21
2.1
21
91
0
70
40
13
36
9
1.76
17595--17634
21
1.9
21
85
10
55
35
10
2
52
1.48
19683--19733
19
2.7
19
85
8
70
25
15
35
23
1.94
19558--19735
64
2.8
65
83
2
216
26
16
26
29
1.97
19585--19784
65
3.1
65
80
13
200
27
17
26
30
1.97
23736--23775
21
1.9
21
89
0
62
30
7
7
55
1.56
26953--27021
23
3.0
23
70
8
68
17
20
26
36
1.94
27819--27911
27
3.4
27
92
4
161
12
7
35
44
1.71
36685--36756
37
1.9
37
88
0
108
12
13
13
59
1.61
40917--41011
48
2.0
47
93
2
163
33
17
25
23
1.96
41836--41899
21
3.1
21
72
4
67
37
25
18
18
1.94
48626--48656
2
15.5
2
100
0
62
48
0
0
51
1.00
49141--49179
16
2.4
16
95
0
69
41
10
12
35
1.77
53244--53278
17
2.2
17
90
10
56
65
2
0
31
1.07
55424--55465
22
2.0
22
95
4
77
66
14
0
19
1.25
60000--60046
20
2.3
20
85
3
67
23
21
21
34
1.97
60170--60194
11
2.3
11
100
0
50
36
0
8
56
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71570--71619
20
2.5
20
90
0
73
26
16
30
28
1.96
71419--71726
147
2.1
147
95
0
553
31
15
21
32
1.94
72271--72316
21
2.2
21
84
0
56
21
17
30
30
1.96
78601--78654
20
2.5
20
82
8
63
18
22
33
25
1.97
79196--79245
21
2.4
21
83
6
66
24
12
30
34
1.91
80087--80155
31
2.2
31
94
0
120
20
11
23
44
1.83
80514--80556
19
2.3
18
81
18
52
48
0
2
48
1.14
81421--81587
87
1.9
86
90
3
264
40
8
14
35
1.77
84916--85484
183
3.1
183
94
1
973
33
16
14
35
1.89
88242--89356
200
5.6
200
94
1
1934
31
18
14
35
1.91
89600--89644
19
2.4
18
82
7
54
53
11
2
33
1.49
89612--89658
19
2.6
19
93
6
80
55
10
2
31
1.46
91514--91578
21
3.1
21
93
0
103
16
30
10
41
1.83

Tables:   1

The End!