genome.fa.s8883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008883.1 Hibiscus syriacus cultivar Beakdansim tig00112129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79752

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8782--8831	20	2.5	20	90	0	73	26	16	30	28	1.96
8631--8980	147	2.4	147	92	1	558	29	15	22	31	1.95
8929--8980	22	2.5	20	81	6	59	21	17	34	26	1.95
9481--9526	21	2.2	21	84	0	56	21	17	30	30	1.96
15794--15847	20	2.5	20	82	8	63	18	22	33	25	1.97
16387--16436	21	2.4	21	83	6	66	24	12	30	34	1.91
17278--17346	31	2.2	31	94	0	120	20	11	23	44	1.83
17705--17747	19	2.3	18	81	18	52	48	0	2	48	1.14
18609--18775	87	1.9	86	90	3	264	40	8	14	35	1.77
22098--22668	183	3.1	183	94	1	975	33	16	14	35	1.89
25430--26548	200	5.6	200	95	0	1970	31	18	14	35	1.91
26792--26852	19	3.3	18	88	2	59	52	11	1	34	1.47
26804--26852	19	2.6	19	96	0	89	55	10	2	32	1.45
28640--28705	33	2.0	33	90	0	105	22	48	0	28	1.51
28738--28801	21	3.1	20	90	4	92	17	31	10	40	1.84
31032--31078	20	2.4	19	82	10	67	19	17	10	53	1.72
30999--31469	180	2.6	182	88	1	680	27	16	13	42	1.85
42414--42493	20	3.7	22	66	17	60	57	0	0	42	0.98
42406--42493	33	2.8	31	82	6	106	55	0	0	44	0.99
42402--42493	31	3.0	29	79	17	98	57	0	0	42	0.98
42535--42565	13	2.5	13	94	5	55	48	35	9	6	1.62
42816--42848	16	2.1	16	100	0	66	39	12	18	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47419--47483	7	9.3	7	100	0	130	0	29	0	70	0.87
49535--49706	33	5.1	33	76	14	122	43	4	8	43	1.54
49560--49774	35	6.0	35	76	10	184	45	4	7	43	1.51
49529--49718	70	2.8	70	79	11	205	43	3	7	44	1.51
49683--49758	39	1.9	40	86	7	111	44	3	9	42	1.55
49903--49958	3	18.7	3	78	14	62	26	3	0	69	1.04
49900--49963	25	2.6	25	85	9	78	25	3	0	71	1.00
56147--57115	165	5.9	162	87	4	1061	28	25	21	24	1.99
56196--57115	249	3.7	248	81	5	1070	29	25	21	24	1.99
56167--57093	414	2.2	413	85	3	1247	28	25	21	23	1.99
57744--58001	37	6.9	36	77	11	234	44	3	7	43	1.50
57987--58052	32	2.1	32	91	0	105	46	3	6	43	1.43
58131--58192	3	20.7	3	78	15	58	25	3	0	70	1.02
60121--60220	8	12.2	8	77	4	92	37	28	2	33	1.69
60703--60853	59	2.5	60	88	1	214	26	25	14	33	1.94
62828--62856	15	1.9	15	100	0	58	17	20	20	41	1.90
64770--64797	14	2.0	14	100	0	56	57	7	0	35	1.26
66731--66825	30	3.2	30	78	12	106	35	8	0	55	1.30
66855--66944	29	3.0	29	75	4	99	38	11	0	50	1.38
66856--66957	29	3.5	29	76	5	89	40	10	0	49	1.38
71152--71224	30	2.4	30	90	0	119	30	23	20	26	1.99
71198--71278	31	2.6	30	76	5	72	30	23	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72363--72503	64	2.2	63	83	3	176	24	24	18	32	1.97
75005--75053	25	2.0	25	100	0	98	32	20	10	36	1.86
75850--75981	30	4.4	30	92	0	212	31	22	21	24	1.99
75850--76006	60	2.6	60	87	2	199	32	23	21	22	1.98
75967--76058	31	3.0	31	79	1	105	32	21	18	27	1.97
77066--77142	20	3.7	20	79	14	75	24	24	23	27	2.00

Tables:   1

The End!