genome.fa.s8885.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008885.1 Hibiscus syriacus cultivar Beakdansim tig00112131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  671647

Tables:   1   2   3   

This is table  1  of  3  ( 360 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--220	55	4.0	55	93	1	370	29	25	15	30	1.95
1204--1257	8	6.2	8	83	12	54	11	11	0	77	0.99
1204--1281	36	2.1	36	81	6	86	10	14	0	75	1.04
4727--4752	8	3.2	8	100	0	52	50	11	0	38	1.39
14206--14248	17	2.5	17	92	0	77	13	23	46	16	1.83
14835--14884	22	2.3	23	80	13	61	46	8	12	34	1.70
15243--15280	13	3.0	13	84	7	51	63	0	0	36	0.95
21601--21674	32	2.6	29	76	17	66	45	2	1	50	1.24
32094--32147	19	2.8	19	85	2	63	38	33	9	18	1.83
32329--32376	22	2.2	22	92	0	78	14	47	18	18	1.82
32719--32787	20	3.8	20	72	21	69	44	20	17	17	1.86
32794--32859	34	1.9	34	81	6	80	16	13	19	50	1.78
34366--34518	42	3.6	42	87	1	209	24	40	15	18	1.90
34650--34702	21	2.5	21	93	0	97	18	13	33	33	1.90
34938--34986	21	2.3	21	85	0	71	22	34	14	28	1.93
36373--36439	20	3.3	20	80	0	80	22	13	19	44	1.85
36693--36727	6	5.8	6	93	0	61	17	2	17	62	1.44
38247--38298	25	2.1	25	100	0	104	36	36	7	19	1.80
39795--39832	16	2.5	15	84	12	51	65	0	5	28	1.14
39970--40017	18	2.5	19	83	10	62	35	10	25	29	1.89
40120--40248	20	6.3	21	72	8	86	30	10	25	33	1.90
49025--49054	4	7.5	4	100	0	60	26	23	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55912--55953	21	2.0	20	86	13	59	52	9	0	38	1.34
58403--59020	313	2.0	303	95	3	1119	36	14	25	24	1.93
70502--70579	35	2.1	35	84	13	95	42	23	3	30	1.72
70813--70868	2	28.0	2	89	7	69	48	5	1	44	1.36
71022--71074	24	2.2	23	83	12	63	37	5	0	56	1.23
71092--71139	14	3.7	14	73	21	59	39	2	0	58	1.10
74119--74159	3	13.0	3	85	10	55	63	0	2	34	1.08
74119--74159	13	3.2	13	86	10	50	63	0	2	34	1.08
74364--74803	135	3.3	131	85	4	560	24	17	30	27	1.97
74860--74925	28	2.4	28	89	0	96	42	18	15	24	1.88
75082--75178	36	2.7	36	82	7	110	40	12	16	30	1.85
77737--77769	16	2.1	16	94	0	57	45	0	3	51	1.16
77746--77783	20	1.9	19	85	15	51	39	0	5	55	1.23
81149--81321	95	1.8	95	94	0	310	17	16	18	47	1.83
96877--96944	25	2.9	23	70	20	59	47	5	1	45	1.36
97189--97245	12	4.6	12	80	4	51	47	5	5	42	1.48
103706--103757	17	3.0	17	73	13	52	67	0	0	32	0.91
104916--104941	12	2.2	12	100	0	52	69	0	0	30	0.89
116319--116617	82	3.6	82	89	2	429	38	14	10	37	1.80
116799--116837	21	1.9	20	85	15	53	28	0	0	71	0.86
121997--122076	18	4.3	18	77	16	83	43	0	0	56	0.99
122011--122065	24	2.3	24	90	6	85	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121997--122065	3	23.0	3	79	8	70	42	0	0	57	0.98
123551--123594	2	22.0	2	95	0	79	52	0	0	47	1.00
123989--124042	22	2.5	22	75	6	56	51	3	1	42	1.30
129829--129871	16	2.8	15	80	13	52	76	0	18	4	0.95
129832--129892	16	3.6	16	72	14	50	72	0	24	3	1.00
129801--129889	19	4.7	19	73	8	74	71	0	23	4	1.03
129823--129889	29	2.4	28	78	14	66	73	0	22	4	1.01
132182--132239	15	3.9	15	74	17	66	46	15	13	24	1.82
133733--133874	50	2.8	50	97	0	266	38	11	21	28	1.89
134239--134313	21	3.5	22	87	12	120	36	10	14	38	1.81
134988--135732	76	9.9	76	95	1	1356	24	19	21	35	1.96
149609--149675	31	2.2	31	81	5	73	28	25	10	35	1.89
149617--149682	31	2.1	31	88	5	98	21	27	13	37	1.91
152610--152683	36	2.1	36	94	0	130	39	8	16	36	1.78
152878--152929	27	2.0	27	84	3	70	51	0	5	42	1.25
152957--153009	23	2.3	23	80	0	61	45	1	1	50	1.23
152937--153010	34	2.1	35	78	14	82	44	1	2	51	1.24
152997--153077	19	4.3	19	72	20	64	48	1	1	49	1.17
153383--153452	32	2.2	32	82	10	81	50	0	5	44	1.26
154477--154528	20	2.6	20	93	0	86	40	25	13	21	1.89
154584--154777	20	9.6	20	76	8	76	35	25	19	19	1.95
154580--154777	40	5.0	39	81	4	200	35	26	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154584--154776	60	3.2	60	83	0	251	35	25	19	19	1.95
155159--155229	33	2.2	33	92	0	115	11	22	18	47	1.80
155350--155404	14	3.6	14	73	21	56	41	23	25	9	1.83
155350--155420	33	2.2	33	94	0	124	43	25	22	8	1.81
155416--155513	19	5.7	19	70	22	81	10	24	22	42	1.84
155438--155527	14	5.7	14	74	23	81	8	25	23	42	1.83
155421--155535	33	3.5	33	95	0	212	9	24	20	45	1.81
157229--157515	93	3.1	93	98	1	558	22	12	18	46	1.83
157559--157687	19	7.3	19	75	17	125	45	28	17	8	1.77
157595--157687	33	2.8	32	91	4	150	46	27	18	7	1.76
157559--157687	52	2.5	52	74	14	140	45	28	17	8	1.77
157704--157759	14	3.7	14	80	17	67	10	21	23	44	1.83
157688--157778	32	2.8	32	91	1	146	10	19	21	47	1.80
157683--157798	19	6.8	18	75	16	104	10	19	23	46	1.80
157750--157815	19	3.4	19	87	6	89	10	16	27	45	1.80
159700--159736	14	2.6	14	91	0	65	32	0	21	45	1.52
159842--159942	19	5.6	19	82	15	142	43	17	23	14	1.87
159949--160262	52	5.9	52	85	11	321	14	20	18	46	1.84
159971--160262	19	16.4	19	82	14	383	14	20	18	46	1.83
159971--160231	127	2.1	122	82	13	170	14	20	17	47	1.83
162731--162777	24	2.0	24	87	8	69	38	21	14	25	1.92
163457--163825	20	18.5	20	85	5	442	20	18	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164419--164493	29	2.6	30	74	17	79	68	2	0	29	1.04
164446--164489	23	1.9	23	86	9	63	68	2	0	29	1.02
165179--165217	13	2.9	14	80	7	53	61	0	2	35	1.10
165318--165470	60	2.5	61	78	12	156	32	19	5	41	1.75
166021--166063	22	1.9	23	85	4	61	48	4	0	46	1.22
166202--166248	23	2.1	23	84	7	62	51	0	0	48	1.00
166202--166264	23	2.8	22	77	13	58	47	0	3	49	1.17
167293--167455	65	2.5	65	85	5	220	33	21	17	27	1.95
169189--169223	13	2.7	13	90	0	52	42	0	0	57	0.99
174957--175008	17	3.2	17	75	10	54	32	1	13	51	1.52
176573--176625	21	2.5	21	81	6	72	20	26	18	33	1.96
176615--176666	21	2.5	21	90	3	79	40	17	21	21	1.91
176600--176852	41	6.2	41	72	8	158	33	20	18	28	1.96
176677--176742	21	3.2	21	78	4	71	24	22	15	37	1.92
176738--176849	20	5.6	20	84	4	136	37	20	20	21	1.94
177368--177446	33	2.4	33	91	0	122	48	22	18	10	1.78
177464--177552	14	5.6	14	71	23	70	11	24	24	39	1.88
177447--177573	33	3.8	33	96	1	227	11	23	23	40	1.87
177544--177601	20	2.9	20	82	10	73	13	22	18	44	1.85
179277--179455	94	2.0	88	87	10	254	22	11	18	47	1.81
179727--179793	21	3.2	21	66	6	55	23	35	20	19	1.95
179675--179793	42	2.8	42	81	5	107	23	36	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181131--181167	14	2.7	13	88	12	56	35	0	18	45	1.50
181280--181388	33	3.3	33	88	0	146	48	21	18	11	1.79
181280--181334	19	3.2	18	70	24	55	49	18	18	14	1.80
181394--181544	19	8.7	19	64	21	80	13	22	19	44	1.85
181398--181524	33	3.8	33	94	0	218	12	22	18	45	1.83
181419--181506	14	5.6	14	69	23	50	12	22	19	45	1.84
184043--184096	24	2.2	24	86	0	72	42	20	14	22	1.88
184957--185072	20	5.8	20	95	1	171	24	25	20	29	1.99
184923--185067	60	2.4	60	80	4	159	28	24	20	26	1.99
185294--185341	20	2.4	20	96	0	87	33	27	22	16	1.96

Tables:   1   2   3