Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008886.1 Hibiscus syriacus cultivar Beakdansim tig00112133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72976

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4263--4287
12
2.1
12
100
0
50
36
0
16
48
1.46
5267--5353
38
2.4
37
88
3
122
19
21
29
28
1.98
5273--5358
18
4.7
18
85
5
118
19
20
31
27
1.97
6779--6836
20
2.6
22
86
10
75
31
18
22
27
1.97
8250--8314
21
3.1
21
100
0
130
20
23
27
29
1.98
8250--8328
42
2.0
41
90
7
117
18
21
30
29
1.97
9663--9688
2
13.0
2
100
0
52
50
0
0
50
1.00
9959--10008
20
2.5
20
83
0
64
82
2
16
0
0.77
11940--12136
52
3.7
52
80
10
243
28
9
19
41
1.83
11930--12138
110
1.9
110
91
0
346
30
9
18
42
1.81
12216--12301
41
2.1
41
86
2
118
27
20
18
32
1.96
12327--12482
59
2.6
60
84
2
188
28
27
14
28
1.95
12621--12736
59
2.0
59
83
6
146
32
29
12
25
1.92
24125--24248
46
2.7
46
84
0
158
29
10
29
30
1.90
27429--27542
43
2.7
43
81
6
117
31
18
25
24
1.97
27450--27567
43
2.7
43
86
2
157
27
17
26
27
1.98
27444--27593
43
3.5
43
80
5
142
29
19
24
27
1.98
27489--27628
43
3.3
43
80
6
106
26
22
21
29
1.99
28010--28125
42
2.8
42
88
5
137
1
38
19
39
1.62
28047--28154
42
3.0
34
81
14
94
2
37
19
39
1.66
28010--28121
21
5.3
21
81
0
116
0
39
19
40
1.58
28061--28140
21
3.8
21
79
0
97
3
36
20
40
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28022--28140
63
1.9
63
83
0
157
2
38
20
38
1.66
36921--37050
41
3.2
41
85
2
172
31
18
16
33
1.93
44053--44577
59
8.9
59
92
0
863
30
20
13
35
1.91
44821--44860
18
2.4
16
81
18
55
60
17
5
17
1.54
44950--45127
75
2.4
74
77
12
195
26
22
16
34
1.95
53885--53949
23
2.7
23
75
15
62
73
6
10
9
1.23
54957--55007
17
2.9
17
69
13
50
17
7
1
72
1.18
57589--57678
45
2.0
45
95
0
162
34
16
18
30
1.94
61932--62111
59
3.1
59
92
0
288
31
19
11
37
1.88
62435--62636
95
2.1
95
82
8
234
26
23
16
33
1.96
63570--63597
9
3.1
9
100
0
56
46
10
32
10
1.73
65228--65461
115
2.0
115
94
0
407
36
26
9
27
1.87

Tables:   1

The End!