Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008889.1 Hibiscus syriacus cultivar Beakdansim tig00112154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105664
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:2893 original size:23 final size:23
Alignment explanation
Indices: 2850--2895 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
2840 ACATATTAGT
**
2850 TAGCGCTTATATAATGTAATAGG
1 TAGCGCTTATATAATAAAATAGG
2873 TAGCGCTTATATAATAAAATAGG
1 TAGCGCTTATATAATAAAATAGG
2896 CATTTAACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGCGCTTATATAATAAAATAGG
Found at i:5786 original size:14 final size:15
Alignment explanation
Indices: 5767--5795 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5757 TGTTTTCTCA
5767 TAAACCGG-TACATT
1 TAAACCGGTTACATT
5781 TAAACCGGTTACATT
1 TAAACCGGTTACATT
5796 GTTAATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (15 bp):
TAAACCGGTTACATT
Found at i:6030 original size:198 final size:198
Alignment explanation
Indices: 5614--7258 Score: 2222
Period size: 198 Copynumber: 8.3 Consensus size: 198
5604 AGACATATGG
* * *
5614 TTATAATTATGTTTTTCGATGTTTTTGGGATAGACAATTGTTATAAATGTATCGAAACTTGTT-G
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT-TTAG
* * * * * * *
5678 TGCACTTGGTTTTTAAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGAT
65 TGCACTTGG-TTTTGAAATACATTCTGGACCAAAA-GTATCGACACTTGTTATATTTGTGTCGAT
** * * * * * * *
5743 ACTTCATGTATACTTGTTTTCTCATAAACCGGTACATTTAAACCGGTTACATTG-TTAATTTACA
128 ACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACA-TGAATAATTTACC
5807 TATTACA
192 TATTACA
* * *
5814 TTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC-TTTTAG
* **
5879 TGCACTTGATTTTGAAATACATTCTGGAGAAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
65 TGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
* *
5944 TTTTTGTACACTTGTTTTCTC-AAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTAT
130 TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTAT
6008 TACA
195 TACA
* * *
6012 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGAAACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTA-G
* * *
6077 TGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
65 TGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
* * * * *
6142 TGTTTGTACACCTATTTTCTCAAAAACC-GTGTATTTAGACCGGTTATATTG-CTAATTTACCTA
130 TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACA-TGAATAATTTACCTA
6205 TTACA
194 TTACA
* *
6210 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATATATGTATCGACACTTTTTAG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC-TTTTAG
* * ** *
6275 TGCACTTGGTTTTGAAATACAGTCTAGAGAAAAAGTATCGACACTTGTTAGATTTGTGTCGATAC
65 TGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
* ***
6340 -GTTTGTACACCTGTTTTCTCAAAAACC-GTATATTTAGACTATTTACATGAATAATTTACCTAT
130 TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTAT
6403 TACA
195 TACA
* *
6407 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTA-G
* *
6472 TGCACTTGGTTCT-AAACTACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGAT-
65 TGCACTTGGTTTTGAAA-TACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATA
* ** * * *** *
6535 GTTGTTTGTACACCTGTTTTCTCAAAAACTAGTATGTTTAGACCGGTTATATTTCTAGTTTACCT
129 CTT-TTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCT
6600 ATTACA
193 ATTACA
*
6606 TTATAATTATGGTTTTT-GATGTTTTTGGGATCGACACTTGTTATAAATGTATTGACACTTTTAG
1 TTATAATTAT-GTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTAG
*
6670 TGCACTTGGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTT-TGATTTGTGTCGATA
65 TGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTAT-ATTTGTGTCGATA
* * * * *
6734 CTTTTTTTACACATGTTTTCTCAAAAACTGGTATATTTAGACTGTTTACATGAATAATTTACCTA
129 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTA
6799 TTACA
194 TTACA
* * *
6804 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATTTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTA-G
* * *
6869 TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
65 TGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
* ***
6934 TTTTTGTACACCTGTTTTCTCAAAAACCGG--TATTTAGACCGGTTATATTTCTAATTTACCTAT
130 TTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTAT
6997 TACA
195 TACA
* *
7001 TTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTG-TA-AATTTTGTATCGACACTTTTA
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAA--ATGTATCGACACTTTTA
* * *
7064 GTGCACTTAGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTTAGATTTGTGTCGATA
64 GTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATA
* * * **
7129 CTTTTTGTAAACCTGTTTTCTCAAAAATCTGTATATTTAGACCTATTACATGAATAATTTACCTA
129 CTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTA
7194 TTACA
194 TTACA
* *
7199 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTT
1 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTT
7259 GTTTTATTTG
Statistics
Matches: 1277, Mismatches: 142, Indels: 54
0.87 0.10 0.04
Matches are distributed among these distances:
195 2 0.00
196 98 0.08
197 262 0.21
198 583 0.46
199 237 0.19
200 84 0.07
201 11 0.01
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (198 bp):
TTATAATTATGTTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTAGT
GCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTATATTTGTGTCGATACT
TTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATGAATAATTTACCTATT
ACA
Found at i:6515 original size:395 final size:394
Alignment explanation
Indices: 5614--7258 Score: 2530
Period size: 395 Copynumber: 4.2 Consensus size: 394
5604 AGACATATGG
* * * * * *
5614 TTATAATTATGTTTTTCGATGTTTTTGGGATAGACAATTGTTATAAATGTATCGAAACTTGT-TG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
* * * * * * *
5678 TGCACTTGGTTTTTAAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGAT
66 TGCACTTGG-TTCTAAAATACATTCTGGACCAAAA-GTATCGACACTTGTTCTATTTGTGTCGAT
* * * * * * * *
5743 ACT-TCATGTATACTTGTTTTCTCATAAACCGGTACATTTAAACCGGTTACATTGTTAATTTACA
129 ACTGT-TTGTACACCTGTTTTCTCAAAAACCGGT--ATTTAGACCGGTTATATTGCTAATTTACC
* *
5807 TATTACATTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACAC
191 TATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
* * *
5872 TTTTTAGTGCACTTGATTTTGAAATACATTCTGGAGAAAAAGTATCGACACTTGTTATATTTGTG
256 -TTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTG
* **
5937 TCGATACTTTTTGTACACTTGTTTTCTC-AAAACCGGTATATTTAGACCGTTTACATGAATAATT
320 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACC-GTATATTTAGACTATTTACATGAATAATT
6001 TACCTATTACA
384 TACCTATTACA
*
6012 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGAAACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
* *
6077 TGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
66 TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
*
6142 TGTTTGTACACCTATTTTCTCAAAAACCGTGTATTTAGACCGGTTATATTGCTAATTTACCTATT
131 TGTTTGTACACCTGTTTTCTCAAAAACCG-GTATTTAGACCGGTTATATTGCTAATTTACCTATT
*
6207 ACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATATATGTATCGACACTTTT
195 ACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC-TTT
* * *
6272 TAGTGCACTTGGTTTTGAAATACAGTCTAGAGAAAAAGTATCGACACTTGTTAGATTTGTGTCGA
259 TAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGA
*
6337 TAC-GTTTGTACACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAATTTACCT
324 TACTTTTTGTACACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAATTTACCT
6401 ATTACA
389 ATTACA
6407 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
* **
6472 TGCACTTGGTTCTAAACTACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATGT
66 TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
** * *
6537 TGTTTGTACACCTGTTTTCTCAAAAACTAGTATGTTTAGACCGGTTATATTTCTAGTTTACCTAT
131 TGTTTGTACACCTGTTTTCTCAAAAACCGGTA--TTTAGACCGGTTATATTGCTAATTTACCTAT
* *
6602 TACATTATAATTATGGTTTTTGATGTTTTTGGGATCGACACTTGTTATAAATGTATTGACACTTT
194 TACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT
* * *
6667 TAGTGCACTTGGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTTTGATTTGTGTCGA
259 TAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGA
* * * *
6732 TACTTTTTTTACACATGTTTTCTCAAAAACTGGTATATTTAGACTGTTTACATGAATAATTTACC
324 TACTTTTTGTACACCTGTTTTCTCAAAAAC-CGTATATTTAGACTATTTACATGAATAATTTACC
6797 TATTACA
388 TATTACA
*
6804 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATTTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
6869 TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
66 TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
* *
6934 TTTTTGTACACCTGTTTTCTCAAAAACCGGTATTTAGACCGGTTATATTTCTAATTTACCTATTA
131 TGTTTGTACACCTGTTTTCTCAAAAACCGGTATTTAGACCGGTTATATTGCTAATTTACCTATTA
*
6999 CATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTG-TA-AATTTTGTATCGACACTTT
196 CATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAA--ATGTATCGACACTTT
* * *
7062 TAGTGCACTTAGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTTAGATTTGTGTCGA
259 TAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGA
* *
7127 TACTTTTTGTAAACCTGTTTTCTCAAAAATCTGTATATTTAGACCTA-TTACATGAATAATTTAC
324 TACTTTTTGTACACCTGTTTTCTCAAAAA-CCGTATATTTAGA-CTATTTACATGAATAATTTAC
7191 CTATTACA
387 CTATTACA
7199 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTT
7259 GTTTTATTTG
Statistics
Matches: 1157, Mismatches: 78, Indels: 27
0.92 0.06 0.02
Matches are distributed among these distances:
393 2 0.00
394 5 0.00
395 541 0.47
396 275 0.24
397 244 0.21
398 79 0.07
399 11 0.01
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (394 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
TGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTATTTGTGTCGATAC
TGTTTGTACACCTGTTTTCTCAAAAACCGGTATTTAGACCGGTTATATTGCTAATTTACCTATTA
CATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTA
GTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAGATTTGTGTCGATA
CTTTTTGTACACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAATTTACCTAT
TACA
Found at i:7239 original size:792 final size:793
Alignment explanation
Indices: 5614--7261 Score: 2623
Period size: 792 Copynumber: 2.1 Consensus size: 793
5604 AGACATATGG
* * * * *
5614 TTATAATTATGTTTTTCGATGTTTTTGGGATAGACAATTGTTATAAATGTATCGAAACTTGTTGT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTGTTGT
* * *
5679 GCACTTGGTTTTTAAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGATA
66 GCACTTGGTTTCTAAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
* * * *
5744 CTTCATGTATACTTGTTTTCTCATAAACCGGTACATTTAAACCGGTTACATTGTTAATTTACATA
131 CTTCATGTACACCTGTTTTCTCAAAAACCAGTACATTTAAACCGGTTACATTGTTAATTTACATA
5809 TTACATTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACACTT
196 TTACATTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACACTT
*
5874 TTTAGTGCACTTGATTTTGAAATACATTCTGGAGAAAAAGTATCGACACTTGTTATATTTGTGTC
261 TTTAGTGCACTTGATTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTATATTTGTGTC
*
5939 GATACTTTTTGTACACTTGTTTTCTCAAAACCGGTATATTTAGACCGTTTACATGAATAATTTAC
326 GATACTTTTTGTACACATGTTTTCTCAAAACCGGTATATTTAGACCGTTTACATGAATAATTTAC
6004 CTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGAAA
391 CTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGAAA
*
6069 CTTTTATGTGCACTTGGTTCTGAAATACATTATGGACCAAAAGTATCGACACTTGTTCTATTTGT
456 CTTTTATGTGCACTTGGTTCTAAAATACATTATGGACCAAAAGTATCGACACTTGTTCTATTTGT
6134 GTCGATACTGTTTGTACACCTATTTTCTCAAAAACCGTGTATTTAGACCGGTTATATTGCTAATT
521 GTCGATACTGTTTGTACACCTATTTTCTCAAAAACCGTGTATTTAGACCGGTTATATTGCTAATT
*
6199 TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATATATGTATCG
586 TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTAATATATGTATCG
* *
6264 ACACTTTTTAGTGCACTTGGTTTTGAAATACAGTCTAGAGAAAAAGTATCGACACTTGTTAGATT
651 ACACTTTTTAGTGCACTTAGTTTTGAAATACAGTCTAGACAAAAAGTATCGACACTTGTTAGATT
*
6329 TGTGTCGATACGTTTGTACACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAA
716 TGTGTCGATACGTTTGTAAACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAA
6394 TTTACCTATTACA
781 TTTACCTATTACA
*
6407 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTTTATG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTGT-TG
* * * * *
6472 TGCACTTGG-TTCTAAACTACATTCTGGACCAAAA-GTATCGACACTTGTTCTATTTGTGTCGAT
65 TGCACTTGGTTTCTAAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGAT
* ** * ** * * *
6535 -GTTGTTTGTACACCTGTTTTCTCAAAAACTAGTATGTTTAGACCGGTTATATT-TCTAGTTTAC
130 ACTT-CATGTACACCTGTTTTCTCAAAAACCAGTACATTTAAACCGGTTACATTGT-TAATTTAC
* * * * *
6598 CTATTACATTATAATTATGGTTTTTGATGTTTTTGGGATCGACACTTGTTATAAATGTATTGACA
193 ATATTACATTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACA
* * *
6663 C-TTTTAGTGCACTTGGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGTT-TGATTTG
258 CTTTTTAGTGCACTTGATTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTAT-ATTTG
* * *
6726 TGTCGATACTTTTTTTACACATGTTTTCTCAAAAACTGGTATATTTAGACTGTTTACATGAATAA
322 TGTCGATACTTTTTGTACACATGTTTTCTC-AAAACCGGTATATTTAGACCGTTTACATGAATAA
*
6791 TTTACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATTTAT
386 TTTACCTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTAT
* *
6856 CGACACTTTTATGTGCACTTGGTTCTAAAATACATTCTGGACCAAAAGTATCGACACTTGTTCTA
451 CGAAACTTTTATGTGCACTTGGTTCTAAAATACATTATGGACCAAAAGTATCGACACTTGTTCTA
* * *
6921 TTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCG-GTATTTAGACCGGTTATATTTC
516 TTTGTGTCGATACTGTTTGTACACCTATTTTCTCAAAAACCGTGTATTTAGACCGGTTATATTGC
*
6985 TAATTTACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTAA-ATTTT
581 TAATTTACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTAATA-TAT
* * * *
7049 GTATCGACAC-TTTTAGTGCACTTAGTTTTGAAATACATTTTGGACCAAAAGTATCGACACTTGT
645 GTATCGACACTTTTTAGTGCACTTAGTTTTGAAATACAGTCTAGACAAAAAGTATCGACACTTGT
* *
7113 TAGATTTGTGTCGATACTTTTTGTAAACCTGTTTTCTCAAAAATCTGTATATTTAGACCTA-TTA
710 TAGATTTGTGTCGATAC-GTTTGTAAACCTGTTTTCTCAAAAA-CCGTATATTTAGA-CTATTTA
7177 CATGAATAATTTACCTATTACA
772 CATGAATAATTTACCTATTACA
7199 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTGTT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTGTT
7262 TTATTTGTGT
Statistics
Matches: 787, Mismatches: 59, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
790 67 0.09
791 202 0.26
792 428 0.54
793 79 0.10
794 11 0.01
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (793 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGACACTTGTTGT
GCACTTGGTTTCTAAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
CTTCATGTACACCTGTTTTCTCAAAAACCAGTACATTTAAACCGGTTACATTGTTAATTTACATA
TTACATTATAATTATGGTTTTCGATATTTTTGGGATCGACACTTATTATAAATGTATCGACACTT
TTTAGTGCACTTGATTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTTATATTTGTGTC
GATACTTTTTGTACACATGTTTTCTCAAAACCGGTATATTTAGACCGTTTACATGAATAATTTAC
CTATTACATTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTAAATGTATCGAAA
CTTTTATGTGCACTTGGTTCTAAAATACATTATGGACCAAAAGTATCGACACTTGTTCTATTTGT
GTCGATACTGTTTGTACACCTATTTTCTCAAAAACCGTGTATTTAGACCGGTTATATTGCTAATT
TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTAATATATGTATCG
ACACTTTTTAGTGCACTTAGTTTTGAAATACAGTCTAGACAAAAAGTATCGACACTTGTTAGATT
TGTGTCGATACGTTTGTAAACCTGTTTTCTCAAAAACCGTATATTTAGACTATTTACATGAATAA
TTTACCTATTACA
Found at i:10599 original size:198 final size:199
Alignment explanation
Indices: 10236--11728 Score: 2424
Period size: 199 Copynumber: 7.5 Consensus size: 199
10226 TTTTCAATTT
* ** * * *
10236 AAACTGGTATATTTAGACCAATTATATTGTTAATTTACCTATTATATTATAATTACGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* * * *
10301 TTTTTTTGGGATCAACACTTGTTATAAATATATCGACAATTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * * *
10366 CATTCTGGACCAAAAGTATCAAAACTTGCTCGATTTGTGTCGATACTTTTTGTACACCGGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
*
10431 TAAA
196 TCAA
* *
10435 AAACCGGTATATTTAGTCCGGTTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* *
10500 TGTTTTT-GGATCGACACTTGTTACAAATGTATCAACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
*
10564 CATTCTGGACAAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10629 TCAA
196 TCAA
* * *
10633 AAACCGGTATATTTAGACCGATTATATTTCTAATTTACCTATTACATTAT--TTATGGTTTTTGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
10696 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * * *
10761 CATTCTGGACCAAACGTATCGACACTTGTTTGATTTGTGTCGCTACTTTTTTTACACCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10826 TCAA
196 TCAA
* * *
10830 AAACCGGTATATTTAGACCGGTTATATTGTTAATTTACCTATTACGTTATAATTATGGTTTTTGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
10895 TG-TTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * *
10959 CATTCTGGACCAAAAGTATCAACACTTGTTAGATTTGTGTCGATACTTTTTGTATACC-GATTTT
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTG-TTTT
11023 CTCAA
195 CTCAA
* *
11028 AAACCGATATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
11093 TGTTTTTGGGATCGACACTTGTTACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* * *
11158 CATTCTGGACCAAACGTATCGACACTTG-TCTGATTTGTGTCGATACTTTTTTTACACATGTTTT
131 CATTCTGGACCAAAAGTATCGACACTTGTTC-GATTTGTGTCGATACTTTTTGTACACCTGTTTT
11222 CTCAA
195 CTCAA
* * *
11227 AAATCGATATATTTAGACCGGTTATATTGTTAATTTACCTATTACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* *
11292 TGTTTTTGGGATCGACACTTGTTATAAATTTATCGACACTTTTTAGTGCTCTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
11357 CATTCTGGACCAAAAGTATCGACACTTGTTAGATTTGTGTCGATACTTTTTGTACATCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
11422 TCAA
196 TCAA
* * *
11426 AAACTGGTATATTTAGTCCGGTTATATTGCTAATTTACCTATTACATTATAATTATAGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
* *
11491 TGTTTTTGGGATCGACACTTTTTACAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
11556 CATTCTGGACAAAAAGTGTCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACC-GATTTT
131 CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTG-TTTT
11620 CTCAA
195 CTCAA
11625 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
1 AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
*
11690 TGATTTTGGGATCGACACTTGTTATAAATGTATCGACAC
66 TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACAC
11729 ATAAGTTTAC
Statistics
Matches: 1200, Mismatches: 85, Indels: 18
0.92 0.07 0.01
Matches are distributed among these distances:
196 18 0.01
197 166 0.14
198 349 0.29
199 665 0.55
200 2 0.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (199 bp):
AAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGA
TGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
CATTCTGGACCAAAAGTATCGACACTTGTTCGATTTGTGTCGATACTTTTTGTACACCTGTTTTC
TCAA
Found at i:12121 original size:18 final size:19
Alignment explanation
Indices: 12074--12122 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
12064 TTACATTCAC
*
12074 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
12093 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
12112 ATAC-AAATTAA
1 ATACAAAATTAA
12123 CCATGCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:13617 original size:21 final size:18
Alignment explanation
Indices: 13579--13617 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
13569 TTCTCCTCAT
13579 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
*
13597 TTCCTCCATCTTCTCTTC
1 TTCCTCCATCTTTTCTTC
13615 TTC
1 TTC
13618 AAATTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.41, G:0.00, T:0.54
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:14043 original size:9 final size:9
Alignment explanation
Indices: 14026--14059 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14016 CTTCTTCCTT
*
14026 CTCCACTGC
1 CTCCTCTGC
14035 CTCCTCTGC
1 CTCCTCTGC
*
14044 TTCCTCTGC
1 CTCCTCTGC
14053 CTCCTCT
1 CTCCTCT
14060 AACTCCTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.03, C:0.53, G:0.09, T:0.35
Consensus pattern (9 bp):
CTCCTCTGC
Found at i:14325 original size:22 final size:21
Alignment explanation
Indices: 14297--14353 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
14287 AACCTACATT
*
14297 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
14319 TATAATAACTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
*
14343 TATAAAAAAAC
1 TATAATAAAAC
14354 AAAAACATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
24 18 0.60
25 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:15650 original size:19 final size:20
Alignment explanation
Indices: 15603--15651 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
15593 CATTTATACA
15603 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
15622 ACCTAT-AATATCATTTT-T
1 ACCTATAAATATCATTTTCT
15640 ACCTATAAATAT
1 ACCTATAAATAT
15652 TAACTAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:16300 original size:181 final size:181
Alignment explanation
Indices: 16036--16533 Score: 789
Period size: 181 Copynumber: 2.7 Consensus size: 181
16026 TATGCGTACT
* * * * * * *
16036 TATTAAAGTATCGACACTTTCAACATATCTGGTATCTATTTACCGGTTTGGTCATTTTGAGACCG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACT-TTTTCCGGTTTTGTCATTTTTAGACCA
* * *
16101 GTTTTTTCATATTTTTACCTGTTATATTATTCTGGATCGATACATTTTCATAAAGTGTCGACACT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
* *
16166 GTTTAAGCGCTATAACTTATTCTCTTTTAAATTCAGAAAGTGTCAATACTTA
130 TTTTAAGCGCTATAACTTATTCTCTTTTAAATTCAAAAAGTGTCAATACTTA
* *
16218 TATTAAATTATCGACACTTTCAACATATCCAGTAACTTTTTCCGGTTTTGTCATTTTTAGACCTG
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTAGACCAG
* * *
16283 TTTTATCATATTTTTACCTGTTATATTGGTAAGGATCGATACATTTTAATAAAGTGTCGACACTT
66 TTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTT
* * *
16348 TTTAAGCGTTATAACTTCTTCTCTTTTAAATTCAAAAAGTGTCGATACTTA
131 TTTAAGCGCTATAACTTATTCTCTTTTAAATTCAAAAAGTGTCAATACTTA
*
16399 TATTAAATTATCGACACTTTCAATATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTTAGACCA
1 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCA-TTTTTAGACCA
16464 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACT
16529 TTTTA
130 TTTTA
16534 GTTTAATTTC
Statistics
Matches: 290, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
181 180 0.62
182 110 0.38
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (181 bp):
TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTAGACCAG
TTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACACTT
TTTAAGCGCTATAACTTATTCTCTTTTAAATTCAAAAAGTGTCAATACTTA
Found at i:16575 original size:162 final size:164
Alignment explanation
Indices: 16372--16693 Score: 468
Period size: 163 Copynumber: 2.0 Consensus size: 164
16362 CTTCTTCTCT
*
16372 TTTAAATTCAAAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAAC-T
1 TTTAAATTCAAAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * *
16436 TTTTCCGGTTTTGTCATTTTTTAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* *
16501 CGATACATTTTCATAAAGTGTCGACACTTTTTAG
131 CAATACATTTTCATAAAGTATCGACACTTTTTAG
* * * *
16535 TTTAATTTCAGAAAGTGTCGATACTT-TATTAAATTATCGACACTTTCAACATATCTGGTATCGT
1 TTTAAATTCAAAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * * * *
16599 TTTACTGGTTTTGTCAATTTTGGGACCTGTTTTATCATATTTTTACTTGTTATATTGTTGTGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* **
16664 CAATATATTTTTTTAAAGTATCGACACTTT
131 CAATACATTTTCATAAAGTATCGACACTTT
16694 ATAGGCGCTA
Statistics
Matches: 140, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
162 33 0.24
163 107 0.76
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.46
Consensus pattern (164 bp):
TTTAAATTCAAAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
TTTACCGGTTTTGTCAATTTTGAGACCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
CAATACATTTTCATAAAGTATCGACACTTTTTAG
Found at i:16873 original size:183 final size:183
Alignment explanation
Indices: 16535--17394 Score: 1057
Period size: 182 Copynumber: 4.8 Consensus size: 183
16525 CACTTTTTAG
* * *
16535 TTTAATTTCAGAAAGTGTCGATACTT-TATTAAATTATCGACACTTTCAACATATCTGGTATCGT
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * * *
16599 TTTACTGGTTTTGTCAATTTTGGGACCTGTTTTATCATATTTTTACTTGTTATATTGTTGTGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* * ** *
16664 CAATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATAACTTCTTATCT
131 CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * *
16717 TTTAAATTCAGAAAGTTTCGATACTTATATTAAATTATCGACACTTTCAATATATCCGGTAGCGT
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* *
16782 TTTACTGGTTTTGTCAATTTTGAGATCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* * * * * *
16847 CGATACATTTTCATAAAGTGTCGACACTTTTTAAGTGCAATAACTTTTTCTCT
131 CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * *
16900 TTTAAATTCAGAAAGTGTCGATGCTTATATTAAATTATCGATACTTTTAACATATCCGGTAAC-T
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * *
16964 TTTTCCGGTTTTGTCATTTTTGAGACCTATTTTATCATATTTTTACC--------TGTTA-GGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* * *
17020 CGATACATTTTCATAAAGTGTCGACACTTTTTAGGCGCTATAACTTCTTCTAT
131 CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * *
17073 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTTTCGACACTTTCAATATATCCGGTAAC-T
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
* * * ** * * *
17137 TTTTCCGGTTTTGTCATTTTTTAGACCAATTTTATCATATTTTTACTTATTATATTGTTGTGGAT
66 TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
* **
17202 CGATATATTTTTTTAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
131 CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
* * * * **
17255 TTTAAATTCAGAAAGTTTCTATACTTATATTAAATTATCGATAC--TCGACACATATCTGGTAGT
1 TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTC-A-ACATATCCGGTAAC
* * * * * *
17318 GTTTTACCGGTTTTGTC-ATTTTGGGACCGGTTTTGTCATATTTGTACCTGTAATATTGCTATGG
64 GTTTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGG
* *
17382 AGCGATCCATTTT
129 ATCGATACATTTT
17395 TCATTTGTAT
Statistics
Matches: 588, Mismatches: 77, Indels: 26
0.85 0.11 0.04
Matches are distributed among these distances:
173 154 0.26
174 5 0.01
180 2 0.00
181 5 0.01
182 212 0.36
183 210 0.36
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.45
Consensus pattern (183 bp):
TTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACATATCCGGTAACGT
TTTACCGGTTTTGTCAATTTTGAGACCTGTTTTATCATATTTTTACCTGTTATATTGTTATGGAT
CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCT
Found at i:17348 original size:20 final size:21
Alignment explanation
Indices: 17323--17361 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
17313 GTAGTGTTTT
17323 ACCGGTTTTGTCAT-TTTGGG
1 ACCGGTTTTGTCATATTTGGG
17343 ACCGGTTTTGTCATATTTG
1 ACCGGTTTTGTCATATTTG
17362 TACCTGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (21 bp):
ACCGGTTTTGTCATATTTGGG
Found at i:18179 original size:20 final size:22
Alignment explanation
Indices: 18142--18189 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
18132 ATTTAAATAG
*
18142 TTAAATGATCCGAGTAATAAAA
1 TTAAAAGATCCGAGTAATAAAA
18164 TTAAAAGAT-CGA-TAATAAAA
1 TTAAAAGATCCGAGTAATAAAA
*
18184 ATAAAA
1 TTAAAA
18190 AAATTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
22 8 0.33
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.25
Consensus pattern (22 bp):
TTAAAAGATCCGAGTAATAAAA
Found at i:21416 original size:45 final size:47
Alignment explanation
Indices: 21356--21452 Score: 117
Period size: 45 Copynumber: 2.1 Consensus size: 47
21346 AATATATTGA
* ** *
21356 CAAACGTTAAACGAACATGCTATTAAA-C-CTAAATGAACACGTTTG
1 CAAACATTAAACGAACATGCTAACAAATCTATAAATGAACACGTTTG
* * *
21401 CAAACATTAGACGAACATGTTAACAAATCTATAAATGAACATGTTTG
1 CAAACATTAAACGAACATGCTAACAAATCTATAAATGAACACGTTTG
21448 CAAAC
1 CAAAC
21453 GCTAAACAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 22 0.51
46 1 0.02
47 20 0.47
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (47 bp):
CAAACATTAAACGAACATGCTAACAAATCTATAAATGAACACGTTTG
Found at i:21451 original size:24 final size:23
Alignment explanation
Indices: 21385--21452 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
21375 CTATTAAACC
*
21385 TAAATGAACACGTTTGCAAACAT
1 TAAATGAACATGTTTGCAAACAT
* * **
21408 TAGACGAACATGTTAACAAATC-T
1 TAAATGAACATGTTTGCAAA-CAT
21431 ATAAATGAACATGTTTGCAAAC
1 -TAAATGAACATGTTTGCAAAC
21453 GCTAAACAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.26
Consensus pattern (23 bp):
TAAATGAACATGTTTGCAAACAT
Found at i:22670 original size:21 final size:23
Alignment explanation
Indices: 22625--22670 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 23
22615 TTTTATTATT
*
22625 AAACTAAGTTAAAACAAATAATGA
1 AAACTAAG-TAAAACAAAGAATGA
22649 AAACTAA-TAAAA-AAAGAATGA
1 AAACTAAGTAAAACAAAGAATGA
22670 A
1 A
22671 CGGAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
24 7 0.33
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.17
Consensus pattern (23 bp):
AAACTAAGTAAAACAAAGAATGA
Found at i:26681 original size:19 final size:19
Alignment explanation
Indices: 26653--26694 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
26643 TCTACTCTAG
*
26653 GGTACCGATACCCTTCCTA
1 GGTACAGATACCCTTCCTA
26672 GGTACAGATACCCTTCCTA
1 GGTACAGATACCCTTCCTA
26691 GGTA
1 GGTA
26695 TCGATACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (19 bp):
GGTACAGATACCCTTCCTA
Found at i:26700 original size:19 final size:18
Alignment explanation
Indices: 26653--26702 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 18
26643 TCTACTCTAG
26653 GGTACCGATACCCTTCCTA
1 GGTA-CGATACCCTTCCTA
26672 GGTACAGATACCCTTCCTA
1 GGTAC-GATACCCTTCCTA
26691 GGTATCGATACC
1 GGTA-CGATACC
26703 AAAATTAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (18 bp):
GGTACGATACCCTTCCTA
Found at i:26767 original size:21 final size:22
Alignment explanation
Indices: 26725--26778 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
26715 GATATTCCCC
*
26725 TGGTATCAATACCCTCCACATA
1 TGGTATCGATACCCTCCACATA
*
26747 -GGTATCGATACCTCTTC-CATA
1 TGGTATCGATACC-CTCCACATA
26768 TGGTATCGATA
1 TGGTATCGATA
26779 TTGTTCATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (22 bp):
TGGTATCGATACCCTCCACATA
Found at i:32092 original size:35 final size:36
Alignment explanation
Indices: 32053--32122 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
32043 AAAAGTAAAC
* *
32053 ATTTTATCTCAAT-GAGATAATTTCTTTTGAAACCA
1 ATTTTATCTCAATCGACATAATTTCCTTTGAAACCA
* *
32088 ATTTTATCTCATTCGACATTATTTCCTTTGAAACC
1 ATTTTATCTCAATCGACATAATTTCCTTTGAAACC
32123 CAAAACATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 12 0.40
36 18 0.60
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (36 bp):
ATTTTATCTCAATCGACATAATTTCCTTTGAAACCA
Found at i:32419 original size:24 final size:24
Alignment explanation
Indices: 32374--32422 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
32364 TGAAAACTCG
* **
32374 TCGTCTTTTTATCTTTGTCATATT
1 TCGTCATTTTATCTTTAACATATT
*
32398 TCGTCATTTTATTTTTAACATATT
1 TCGTCATTTTATCTTTAACATATT
32422 T
1 T
32423 TTTATGTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.18, C:0.14, G:0.06, T:0.61
Consensus pattern (24 bp):
TCGTCATTTTATCTTTAACATATT
Found at i:35859 original size:21 final size:21
Alignment explanation
Indices: 35833--35872 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
35823 CAGAACCCCA
*
35833 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
35854 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
35873 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:35907 original size:20 final size:21
Alignment explanation
Indices: 35853--35915 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
35843 GATTCCCCTG
35853 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
35877 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
35897 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
35916 TGCACAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:39610 original size:21 final size:21
Alignment explanation
Indices: 39568--39611 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
39558 TCAAAAGAAG
*
39568 TTTTAAGATCATCAATTTTCT
1 TTTTAAGATCATCAATTATCT
*
39589 TTTTATGATCATC-ATTGATCT
1 TTTTAAGATCATCAATT-ATCT
39610 TT
1 TT
39612 GAAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
TTTTAAGATCATCAATTATCT
Found at i:39765 original size:22 final size:21
Alignment explanation
Indices: 39723--39762 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
39713 GAGTTTGTTT
*
39723 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
39744 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
39763 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:43371 original size:14 final size:14
Alignment explanation
Indices: 43352--43407 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
43342 TTTCTCTTTG
43352 ATTTTTTTATTTTT
1 ATTTTTTTATTTTT
* *
43366 ATTTTTTAATTATT
1 ATTTTTTTATTTTT
* *
43380 -TGTTTTGATTTATT
1 ATTTTTTTATTT-TT
43394 ATTTTGTTTATTTT
1 ATTTT-TTTATTTT
43408 ATTATTTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
13 8 0.25
14 14 0.44
15 4 0.12
16 6 0.19
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (14 bp):
ATTTTTTTATTTTT
Found at i:43412 original size:34 final size:35
Alignment explanation
Indices: 43348--43414 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 35
43338 TTCCTTTCTC
*
43348 TTTGATTTTTTTATTTTTATTTTTTAATTATTTGT
1 TTTGATTTTATTATTTTTATTTTTTAATTATTTGT
43383 TTTGA-TTTATTATTTTGT-TTATTTT-ATTATTT
1 TTTGATTTTATTATTTT-TATT-TTTTAATTATTT
43415 ATTTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 19 0.66
35 10 0.34
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (35 bp):
TTTGATTTTATTATTTTTATTTTTTAATTATTTGT
Found at i:44437 original size:16 final size:16
Alignment explanation
Indices: 44416--44454 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
44406 ATAAGCATGT
44416 GGGGTAGATATCATAC
1 GGGGTAGATATCATAC
* *
44432 GGGGTAGATATTATGC
1 GGGGTAGATATCATAC
44448 GGGGTAG
1 GGGGTAG
44455 GATTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.08, G:0.41, T:0.26
Consensus pattern (16 bp):
GGGGTAGATATCATAC
Found at i:45714 original size:21 final size:22
Alignment explanation
Indices: 45688--45737 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
45678 AAAGAAGATG
45688 GAGGAGAAAATCAA-GCAGTTA
1 GAGGAGAAAATCAAGGCAGTTA
* * *
45709 GAGGAGCAAATGAAGGTAGTTA
1 GAGGAGAAAATCAAGGCAGTTA
*
45731 AAGGAGA
1 GAGGAGA
45738 CCATGACTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.46, C:0.06, G:0.34, T:0.14
Consensus pattern (22 bp):
GAGGAGAAAATCAAGGCAGTTA
Found at i:47405 original size:99 final size:99
Alignment explanation
Indices: 47285--47482 Score: 306
Period size: 99 Copynumber: 2.0 Consensus size: 99
47275 TTATAATATT
* *
47285 ATATATATACAATAAAGCTTGAGCTAACCCTCTAAAGCAATTGGTTAAACGCCCCGGCTTTATGG
1 ATATATATACAATAAAGCTTGAGCTAACCCACTAAAGCAATTGGTTAAACACCCCGGCTTTATGG
* *
47350 ATAAGATTCAGCTAGCCTGATAAAGGTGATTATA
66 ATAAAATTCAGCTAACCTGATAAAGGTGATTATA
* * ** *
47384 ATATCTATACAATAAAGCTTGAGTTGTCCCACTAGAGCAATTGGTTAAACACCCCGGCTTTATGG
1 ATATATATACAATAAAGCTTGAGCTAACCCACTAAAGCAATTGGTTAAACACCCCGGCTTTATGG
*
47449 ATAAAATTCAGCTAACCTGATAAAGGTGTTTATA
66 ATAAAATTCAGCTAACCTGATAAAGGTGATTATA
47483 TATTGAGTTG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 89 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (99 bp):
ATATATATACAATAAAGCTTGAGCTAACCCACTAAAGCAATTGGTTAAACACCCCGGCTTTATGG
ATAAAATTCAGCTAACCTGATAAAGGTGATTATA
Found at i:47915 original size:26 final size:26
Alignment explanation
Indices: 47886--47938 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47876 TGAACATTTG
*
47886 TCAAAGAGCTATAACTCTGAAAGCAT
1 TCAAAGAGCAATAACTCTGAAAGCAT
47912 TCAAAGAGCAATAACTCTGAAAGCAT
1 TCAAAGAGCAATAACTCTGAAAGCAT
47938 T
1 T
47939 AAAATAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (26 bp):
TCAAAGAGCAATAACTCTGAAAGCAT
Found at i:48829 original size:84 final size:84
Alignment explanation
Indices: 48683--49555 Score: 845
Period size: 84 Copynumber: 10.5 Consensus size: 84
48673 AACTATCGGT
* * * * *
48683 AGCATAACTCAAGACTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAATTCGACTACGCTCAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
48748 TTCAAGGCACATCATTTGC
66 TTCAAGGCACATCATTTGC
* * *
48767 AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACTTTCGAGTTCGACTA-AGCTCAG
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACA-CTCAG
*
48831 CTCCAAGGCACATCATTTGC
65 CTTCAAGGCACATCATTTGC
* ** * * * *
48851 AACATAGCTCAATACAAGAAGGGTTATTTGCCAGCAAAATACCTTCGAGTTCGACTACACTCAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
*
48916 -TCAAAGGCATATCATTTGC
66 TTC-AAGGCACATCATTTGC
* ** * ** * * *
48935 AGCATAACTCAAGGCTAGAAGATTTATTTATCAACCAAAGACCTTCGAGTTCGACTACGCTCAAC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
* *
49000 TCCAAGGCACATCGTTTGC
66 TTCAAGGCACATCATTTGC
* * * * * * * * *
49019 AACATAGCTTAAGGCAAGAAGGGCTATTTACCAACAAAAGATCTTCGAGTTCGACTACGCTCAAC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
*
49084 TCCAAGGCACATCATTTGC
66 TTCAAGGCACATCATTTGC
*
49103 AGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
* *
49168 TCCAAGGCACATCATTTGT
66 TTCAAGGCACATCATTTGC
** * * * * * * *
49187 AATATAGCTCAAGGCAAGAAGGGCTATTTGCCAACAAAATACCTTTGAGTTTGATTACACGT-AG
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACAC-TCAG
*
49251 C-TCAACGGCACATCATTTAC
65 CTTCAA-GGCACATCATTTGC
* * ** * *
49271 AGTATAGCTCAAGGCTAGAAGGGCTATCTG-C--C-AAAGACCCACGAGTTCGATTACACTTAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
* * * *
49332 TTCGAGGGAACATTATTTAC
66 TTC-AAGGCACATCATTTGC
* * * * * * * *
49352 AACATAACTCAAGGCTAGAAGGGTTATCTGTCAAAAAAAGACCTTTGAATTCTATTACACTCAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
*
49417 -TCAACAGCACATCATTTGC
66 TTCAA-GGCACATCATTTGC
* * * * *
49436 AGTATAGTTTAAGGCTAGAAGGGTTATCTG-C--C-AAAGACCCTCGAGTTCGATTACACTCAGC
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
* *
49497 TTCGAGGGCACATCATTTAC
66 TTC-AAGGCACATCATTTGC
* * * * **
49517 AACATAGCTTAAGGCAAGAAGGGCTATCTGTTAACAAAA
1 AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAA
49556 TTGTCGAGTT
Statistics
Matches: 654, Mismatches: 115, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.00
80 47 0.07
81 80 0.12
82 3 0.00
83 7 0.01
84 487 0.74
85 29 0.04
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (84 bp):
AGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGC
TTCAAGGCACATCATTTGC
Found at i:50981 original size:19 final size:18
Alignment explanation
Indices: 50959--50998 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
50949 CTATTTCATA
50959 TTTTATATAATTTTTTCTC
1 TTTTATATAATTTTTT-TC
* *
50978 TTTTTTATTATTTTTTTC
1 TTTTATATAATTTTTTTC
50996 TTT
1 TTT
50999 AACTTATTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATATAATTTTTTTC
Found at i:51191 original size:21 final size:21
Alignment explanation
Indices: 51167--51230 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
51157 GCAAATTCGC
51167 GTTGCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
* **
51188 GTTGAAAATCGCGTTGCGAT-
1 GTTGCATTTCGCGTTGCGATA
* *
51208 TTTCCATTTCGCGTTGCGATA
1 GTTGCATTTCGCGTTGCGATA
51229 GT
1 GT
51231 CTACAGTTGT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
20 15 0.45
21 18 0.55
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (21 bp):
GTTGCATTTCGCGTTGCGATA
Found at i:52391 original size:22 final size:22
Alignment explanation
Indices: 52365--52498 Score: 127
Period size: 22 Copynumber: 6.4 Consensus size: 22
52355 AATTTGGAAA
52365 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
*
52387 ATCGCAACGACAACTGTAGATT
1 ATCGCAACGACAACTGTAGACT
* *
52409 ATCGCAACAACAACTGTACACT
1 ATCGCAACGACAACTGTAGACT
* * **
52431 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
* * **
52450 ATCGCAACG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
52469 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
52491 ATCGCAAC
1 ATCGCAAC
52499 ACGAAATAGA
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
19 31 0.33
20 2 0.02
21 2 0.02
22 60 0.63
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:52453 original size:19 final size:19
Alignment explanation
Indices: 52431--52478 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
52421 ACTGTACACT
52431 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
52450 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
52469 ATCGCAACGA
1 ATCGCAACGA
52479 CAACTGTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (19 bp):
ATCGCAACGAATTTGGAAA
Found at i:52707 original size:8 final size:8
Alignment explanation
Indices: 52696--52814 Score: 52
Period size: 8 Copynumber: 14.8 Consensus size: 8
52686 CTATTTTTAA
52696 ATTTATTT
1 ATTTATTT
52704 ATTTAACTTT
1 ATTT-A-TTT
* *
52714 TTTCTCTTT
1 ATT-TATTT
* *
52723 GTTTTTTT
1 ATTTATTT
52731 ATTT-TTT
1 ATTTATTT
*
52738 ATTTTTTT
1 ATTTATTT
52746 ATTATATATT
1 ATT-TAT-TT
*
52756 -TTGATTT
1 ATTTATTT
52763 A-TTATTTT
1 ATTTA-TTT
52771 ATTTATTT
1 ATTTATTT
52779 -TATTATTT
1 AT-TTATTT
*
52787 ATTTA-AT
1 ATTTATTT
*
52794 ATTTAATT
1 ATTTATTT
52802 A-TTATTT
1 ATTTATTT
*
52809 TTTTAT
1 ATTTAT
52815 CTAATTTGAA
Statistics
Matches: 86, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
7 23 0.27
8 41 0.48
9 14 0.16
10 7 0.08
11 1 0.01
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.73
Consensus pattern (8 bp):
ATTTATTT
Found at i:52737 original size:7 final size:7
Alignment explanation
Indices: 52725--52811 Score: 50
Period size: 7 Copynumber: 11.9 Consensus size: 7
52715 TTCTCTTTGT
52725 TTTTTTA
1 TTTTTTA
52732 TTTTTTA
1 TTTTTTA
52739 TTTTTT-
1 TTTTTTA
* *
52745 TATTATA
1 TTTTTTA
*
52752 TATTTTGA
1 T-TTTTTA
*
52760 TTTATTA
1 TTTTTTA
52767 TTTTATTTA
1 -TTT-TTTA
52776 TTTTATTA
1 TTTT-TTA
52784 TTTATTTA
1 TTT-TTTA
* *
52792 ATATTTA
1 TTTTTTA
* *
52799 ATTATTA
1 TTTTTTA
52806 TTTTTT
1 TTTTTT
52812 TATCTAATTT
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
6 4 0.07
7 32 0.53
8 20 0.33
9 4 0.07
ACGTcount: A:0.24, C:0.00, G:0.01, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:52742 original size:12 final size:12
Alignment explanation
Indices: 52727--52811 Score: 50
Period size: 12 Copynumber: 6.9 Consensus size: 12
52717 CTCTTTGTTT
52727 TTTTATTTTTTA
1 TTTTATTTTTTA
*
52739 TTTTTTTATTATATA
1 TTTTATT-TT-T-TA
*
52754 TTTTGATTTATTA
1 TTTT-ATTTTTTA
52767 TTTTA---TTTA
1 TTTTATTTTTTA
*
52776 TTTTATTATTTA
1 TTTTATTTTTTA
* * *
52788 TTTAATATTTAA
1 TTTTATTTTTTA
52800 TTATTATTTTTT
1 TT-TTATTTTTT
52812 TATCTAATTT
Statistics
Matches: 54, Mismatches: 11, Indels: 15
0.68 0.14 0.19
Matches are distributed among these distances:
9 8 0.15
12 21 0.39
13 14 0.26
14 2 0.04
15 7 0.13
16 2 0.04
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:52796 original size:11 final size:11
Alignment explanation
Indices: 52728--52814 Score: 77
Period size: 11 Copynumber: 7.8 Consensus size: 11
52718 TCTTTGTTTT
*
52728 TTTATTTTTTA
1 TTTATTTATTA
*
52739 TTTTTTTATTA
1 TTTATTTATTA
* *
52750 TATATTT-TGA
1 TTTATTTATTA
*
52760 TTTATTATTTTA
1 TTTATT-TATTA
52772 TTTATTTTATTA
1 TTTA-TTTATTA
*
52784 TTTATTTAATA
1 TTTATTTATTA
*
52795 TTTAATTATTA
1 TTTATTTATTA
*
52806 TTTTTTTAT
1 TTTATTTAT
52815 CTAATTTGAA
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
10 7 0.12
11 37 0.62
12 14 0.23
13 2 0.03
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:52807 original size:34 final size:32
Alignment explanation
Indices: 52728--52814 Score: 97
Period size: 34 Copynumber: 2.6 Consensus size: 32
52718 TCTTTGTTTT
*
52728 TTTATTTTTTATTTTTTTATTATATATTTTGA
1 TTTATTATTTATTTTTTTATTATATATTTTGA
*
52760 TTTATTATTTTATTTATTTTATTATTTATTTAAT-A
1 TTTATTA-TTTATTT-TTTTATTATATATTT--TGA
52795 TTTAATTA-TTATTTTTTTAT
1 TTT-ATTATTTATTTTTTTAT
52815 CTAATTTGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
32 6 0.12
33 13 0.27
34 20 0.42
35 4 0.08
36 5 0.10
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (32 bp):
TTTATTATTTATTTTTTTATTATATATTTTGA
Found at i:54176 original size:2 final size:2
Alignment explanation
Indices: 54169--54209 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
54159 TTCTAAATAG
54169 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
54210 GCGTTAAGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:54310 original size:2 final size:2
Alignment explanation
Indices: 54303--54360 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
54293 AATATTCTTT
54303 TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
54344 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
54361 CCTTACATTT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60686 original size:30 final size:30
Alignment explanation
Indices: 60652--60717 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
60642 TGTAATATTC
* *
60652 TACAAAATTTAAAATCAAAATAGTTATTTA
1 TACAAAATTAAAAATCAAAATAATTATTTA
60682 TACAAAATTAAAAATCAAAATAATTATTTA
1 TACAAAATTAAAAATCAAAATAATTATTTA
60712 TACAAA
1 TACAAA
60718 CGTTAAAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (30 bp):
TACAAAATTAAAAATCAAAATAATTATTTA
Found at i:61877 original size:19 final size:20
Alignment explanation
Indices: 61853--61925 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
61843 GAGTGGATCT
61853 AAAATAATATATTTA-TCAA
1 AAAATAATATATTTATTCAA
* *
61872 AAAATATTATTTTTATTCAATA
1 AAAATAATATATTTATTC-A-A
* *
61894 AAAATAATGAT-TTAATTTAA
1 AAAATAAT-ATATTTATTCAA
61914 AAAATAATATAT
1 AAAATAATATAT
61926 AAAATGATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
19 15 0.34
20 12 0.27
21 2 0.05
22 13 0.30
23 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (20 bp):
AAAATAATATATTTATTCAA
Found at i:62313 original size:34 final size:34
Alignment explanation
Indices: 62275--62345 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
62265 TGATTGGAAA
* *
62275 GTAAGAGATATCAACAAACCAGAAATAATCATCT
1 GTAAGAAATATCAACAAACCAGAAATAATAATCT
*
62309 GTAAGAAATATCAACAAACCTGAAATAATAATCT
1 GTAAGAAATATCAACAAACCAGAAATAATAATCT
62343 GTA
1 GTA
62346 TTGGGCTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.23
Consensus pattern (34 bp):
GTAAGAAATATCAACAAACCAGAAATAATAATCT
Found at i:65989 original size:2 final size:2
Alignment explanation
Indices: 65982--66064 Score: 166
Period size: 2 Copynumber: 41.5 Consensus size: 2
65972 TTATTCTAAA
65982 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66065 AAGATATTTA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 81 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:69896 original size:23 final size:23
Alignment explanation
Indices: 69830--69953 Score: 108
Period size: 23 Copynumber: 5.3 Consensus size: 23
69820 AAATTGCATT
*
69830 GAAGTACCACATAGAATATG-CACC
1 GAAGGACCACATAGAA-ATGTC-CC
* *
69854 AAAGTG-CCACATAAAAATGTCCC
1 GAAG-GACCACATAGAAATGTCCC
* *
69877 GAAGGACTACATAGATATGTCCC
1 GAAGGACCACATAGAAATGTCCC
* *
69900 GAAGGACCGCGTAGAAATGTCCC
1 GAAGGACCACATAGAAATGTCCC
* * *
69923 GAAGGACCACGTAGAATTCTCCC
1 GAAGGACCACATAGAAATGTCCC
*
69946 GACGGACC
1 GAAGGACC
69954 GCGTAGAACC
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
22 1 0.01
23 68 0.83
24 13 0.16
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (23 bp):
GAAGGACCACATAGAAATGTCCC
Found at i:69946 original size:46 final size:46
Alignment explanation
Indices: 69868--69961 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 46
69858 TGCCACATAA
* *
69868 AAATGTCCCGAAGGACTACATAGATATGTCCCGAAGGACCGCGTAG
1 AAATGTCCCGAAGGACCACATAGATATCTCCCGAAGGACCGCGTAG
* *
69914 AAATGTCCCGAAGGACCACGTAGA-ATTCTCCCGACGGACCGCGTAG
1 AAATGTCCCGAAGGACCACATAGATA-TCTCCCGAAGGACCGCGTAG
69960 AA
1 AA
69962 CCCTCAACTC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.02
46 42 0.98
ACGTcount: A:0.32, C:0.27, G:0.26, T:0.16
Consensus pattern (46 bp):
AAATGTCCCGAAGGACCACATAGATATCTCCCGAAGGACCGCGTAG
Found at i:70088 original size:16 final size:16
Alignment explanation
Indices: 70046--70092 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
70036 TTCACATATT
* *
70046 CATATAATCACGTAGTT
1 CATATAATCACATAG-A
70063 CA-AT-ATCACATAGA
1 CATATAATCACATAGA
70077 CATATAATCACATAGA
1 CATATAATCACATAGA
70093 TCCTTGTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.08
15 10 0.38
16 12 0.46
17 2 0.08
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.28
Consensus pattern (16 bp):
CATATAATCACATAGA
Found at i:70116 original size:45 final size:45
Alignment explanation
Indices: 70065--70187 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
70055 ACGTAGTTCA
* ** * *
70065 ATATCACATAGACATATAATCACATAGATCCTTGTCATATAGCTT
1 ATATCACATAGTCATATAATCACATAGATCAATGCCACATAGCTT
*
70110 ATATCACAT-GTTCATATAATCACATAGGTCAATGCCACATAGCTT
1 ATATCACATAG-TCATATAATCACATAGATCAATGCCACATAGCTT
* * * *
70155 ATATCATATATTCATGTAATCACATAGGTCAAT
1 ATATCACATAGTCATATAATCACATAGATCAAT
70188 ATCATATAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.01
45 66 0.99
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (45 bp):
ATATCACATAGTCATATAATCACATAGATCAATGCCACATAGCTT
Found at i:77096 original size:29 final size:29
Alignment explanation
Indices: 77059--77156 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
77049 TTTAAATTTG
77059 TCCTTAAACTTTTGAATATTCTAATTTCA
1 TCCTTAAACTTTTGAATATTCTAATTTCA
* * * *
77088 TCCTCAAAC-TATGACTCTCATTCTAAATT-A
1 TCCTTAAACTTTTGA--AT-ATTCTAATTTCA
* *
77118 GTCCTTAAACTTTTGGACATTCTAATTTCA
1 -TCCTTAAACTTTTGAATATTCTAATTTCA
*
77148 TCATTAAAC
1 TCCTTAAAC
77157 AATGACCTTC
Statistics
Matches: 52, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
28 4 0.08
29 25 0.48
30 3 0.06
31 17 0.33
32 3 0.06
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (29 bp):
TCCTTAAACTTTTGAATATTCTAATTTCA
Found at i:77123 original size:60 final size:60
Alignment explanation
Indices: 77030--77190 Score: 216
Period size: 60 Copynumber: 2.7 Consensus size: 60
77020 ATCATATATA
* * * * *
77030 CTCAAACTATTACTTTCATTTTAAATTTGTCCTTAAACTTTTGAATATTCTAATTTCATC
1 CTCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAACATTCTAATTTCATC
*
77090 CTCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGGACATTCTAATTTCATC
1 CTCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAACATTCTAATTTCATC
* * * *
77150 ATTAAACAATGAC-CTTCATTCTAAATTAGTCCATAAACTTT
1 CTCAAACTATGACTC-TCATTCTAAATTAGTCCTTAAACTTT
77191 GAAATCTTCC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 1 0.01
60 89 0.99
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.42
Consensus pattern (60 bp):
CTCAAACTATGACTCTCATTCTAAATTAGTCCTTAAACTTTTGAACATTCTAATTTCATC
Found at i:77128 original size:31 final size:31
Alignment explanation
Indices: 77033--77188 Score: 78
Period size: 31 Copynumber: 5.2 Consensus size: 31
77023 ATATATACTC
* * * *
77033 AAACTATTACTTTCATTTTAAATTTGTCCTT
1 AAACTATGACTATCATTCTAAATTAGTCCTT
* * *
77064 AAACTTTTGA--AT-ATTCTAATTTCA-TCCTC
1 AAAC-TATGACTATCATTCTAAATT-AGTCCTT
*
77093 AAACTATGACTCTCATTCTAAATTAGTCCTT
1 AAACTATGACTATCATTCTAAATTAGTCCTT
* * * *
77124 AAACTTTTG--GA-CATTCTAATTTCA-TCATT
1 AAAC-TATGACTATCATTCTAAATT-AGTCCTT
* *
77153 AAACAATGACCT-TCATTCTAAATTAGTCCAT
1 AAACTATGA-CTATCATTCTAAATTAGTCCTT
77184 AAACT
1 AAACT
77189 TTGAAATCTT
Statistics
Matches: 89, Mismatches: 23, Indels: 26
0.64 0.17 0.19
Matches are distributed among these distances:
28 6 0.07
29 34 0.38
30 5 0.06
31 38 0.43
32 6 0.07
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (31 bp):
AAACTATGACTATCATTCTAAATTAGTCCTT
Found at i:77432 original size:60 final size:60
Alignment explanation
Indices: 77366--77512 Score: 172
Period size: 60 Copynumber: 2.5 Consensus size: 60
77356 GGCATGTTCA
* * * * **
77366 AAAAGTTTAGGGACCAATTTAGAATGA-CTATTATAGTTTGGGGATGAAATTAAAATGTTT
1 AAAAGTTTAGGGACTAATTTAAAATGATC-ATCATAGTTTAGGGATGAAATTAAAACATTT
**
77426 AAAAGTTT-GAGGACTAATTTAAAATGATCATCATAGTTTAGGGATGAAATTGGAACATTT
1 AAAAGTTTAG-GGACTAATTTAAAATGATCATCATAGTTTAGGGATGAAATTAAAACATTT
* *
77486 AATAGTTTAGGGACTAATTTAATATGA
1 AAAAGTTTAGGGACTAATTTAAAATGA
77513 AGGTCTTACT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
59 1 0.01
60 71 0.96
61 2 0.03
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.35
Consensus pattern (60 bp):
AAAAGTTTAGGGACTAATTTAAAATGATCATCATAGTTTAGGGATGAAATTAAAACATTT
Found at i:91259 original size:131 final size:131
Alignment explanation
Indices: 91006--91368 Score: 318
Period size: 131 Copynumber: 2.8 Consensus size: 131
90996 ATAATTTTAA
* * * * ** * * *
91006 GAGTGAAAACGATAATATCTAATTATTTCCAATAAAGAATAAATGATCTTTTGTGCATTAAAACA
1 GAGTAAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
* * * * *** * *
91071 GTCATTTATTACCCCAATTGAAATAAAGAGATATTAATATTTTGTCTTAAAATTCAATATCGATT
66 ATCATTTATTACCCCAATCGAAATAAAGAGATATCAACATTCCATCCTAAAATTCAATATCAATT
91136 C
131 C
* *
91137 GAGTAAAAACGATAATATCTAATTATTTCCAATCAATAATAAATGACCTCTCCTACCTTAAAGCA
1 GAGTAAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
* * * * * * *
91202 ATCATTTATTGCTCCAATCGAACTGAAGAGATATCACCATTCCATCCTAAGAA-TCAATGTTAAT
66 ATCATTTATTACCCCAATCGAAATAAAGAGATATCAACATTCCATCCTAA-AATTCAATATCAAT
*
91266 TT
130 TC
* * * * *
91268 G-GGAGAAAACG-TCAATATCAAATCATTTCCAATCGAGAATAAATGACATCTCATACCTTAAAG
1 GAGTA-AAAACGAT-AATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAG
* * * * * * *
91331 CAACCATTTATCACTCAAAACGAAATAAAAATATATCA
64 CAATCATTTATTACCCCAATCGAAATAAAGAGATATCA
91369 CTACTCTCAA
Statistics
Matches: 186, Mismatches: 43, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
130 3 0.02
131 181 0.97
132 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (131 bp):
GAGTAAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTAAAGCA
ATCATTTATTACCCCAATCGAAATAAAGAGATATCAACATTCCATCCTAAAATTCAATATCAATT
C
Found at i:92400 original size:35 final size:35
Alignment explanation
Indices: 92354--92428 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
92344 AATATACTTT
*
92354 AATTTAGGGTTTAGAATATAATTGAAGTATTTTAG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
* * *
92389 AATTTAGGGTTTAGAATGTAATTAAAGTGTTTTGG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
92424 AATTT
1 AATTT
92429 TGAACATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (35 bp):
AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
Found at i:92729 original size:73 final size:72
Alignment explanation
Indices: 92603--92741 Score: 235
Period size: 73 Copynumber: 1.9 Consensus size: 72
92593 TCCAAATGTT
92603 ACCATATATCATGGTATATGGTTTGACAACCATACCATATCGACTAAGCCACTATGTCATATACA
1 ACCATATATCATGGTATATGGTTTGACAACCATACCATATCGACTAAGCCACTATGTCATATACA
92668 AAAAATG
66 AAAAATG
* *
92675 ACCATATATCATGGTATATGGTTTTGGCAACCATACCATATTGACTAA-CTCACTATGTCATATA
1 ACCATATATCATGGTATATGG-TTTGACAACCATACCATATCGACTAAGC-CACTATGTCATATA
92739 CAA
64 CAA
92742 TCATCTCGGG
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
72 22 0.35
73 41 0.65
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (72 bp):
ACCATATATCATGGTATATGGTTTGACAACCATACCATATCGACTAAGCCACTATGTCATATACA
AAAAATG
Found at i:93832 original size:36 final size:35
Alignment explanation
Indices: 93756--93833 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
93746 TTTAAACTCT
* *
93756 AAATTAAAGTATTTTAGAATTTAGGGTTTAGAACG
1 AAATTGAAGTATTTTAGAATTTAGGGTTTAAAACG
* * * *
93791 TAATTGAATTATTTTAGAATTTGGGAGTTTAAAATG
1 AAATTGAAGTATTTTAGAATTTAGG-GTTTAAAACG
93827 AAATTGA
1 AAATTGA
93834 GGGCTGTGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
35 21 0.60
36 14 0.40
ACGTcount: A:0.40, C:0.01, G:0.19, T:0.40
Consensus pattern (35 bp):
AAATTGAAGTATTTTAGAATTTAGGGTTTAAAACG
Found at i:95348 original size:20 final size:20
Alignment explanation
Indices: 95323--95360 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
95313 CGGATTATGG
95323 GTTGCTTGAATTGGGCCCAA
1 GTTGCTTGAATTGGGCCCAA
95343 GTTGCTTGAATTGGGCCC
1 GTTGCTTGAATTGGGCCC
95361 GAGTCTTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.21, G:0.32, T:0.32
Consensus pattern (20 bp):
GTTGCTTGAATTGGGCCCAA
Found at i:95515 original size:48 final size:48
Alignment explanation
Indices: 95454--95562 Score: 202
Period size: 48 Copynumber: 2.3 Consensus size: 48
95444 TAATATAAAG
*
95454 ATAATAATAGAAATAATTATAATTAGATAATAATACTAATTAATATTA
1 ATAATAATAGAAATAATTATAATTAGATAATAACACTAATTAATATTA
95502 ATAATAATAGAAATAATTATAATTAGATAATAACACTAATTAATATTA
1 ATAATAATAGAAATAATTATAATTAGATAATAACACTAATTAATATTA
95550 ATAATAATA-AAAT
1 ATAATAATAGAAAT
95563 TGACAAGATC
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
47 4 0.07
48 56 0.93
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.36
Consensus pattern (48 bp):
ATAATAATAGAAATAATTATAATTAGATAATAACACTAATTAATATTA
Found at i:95559 original size:6 final size:6
Alignment explanation
Indices: 95438--95559 Score: 65
Period size: 6 Copynumber: 19.7 Consensus size: 6
95428 AAAAATAAAT
*
95438 ATAAT- ATAAT- ATAA-A GATAATA ATAGA-A ATAATT ATAATTA GATAATA
1 ATAATA ATAATA ATAATA -ATAATA ATA-ATA ATAATA ATAA-TA -ATAATA
* * * *
95486 ATACTA ATTAATA TTAATA ATAATA GA-AATA ATTATA ATTAGATA ATAACA
1 ATAATA A-TAATA ATAATA ATAATA -ATAATA ATAATA A-TA-ATA ATAATA
* *
95537 CTAATTA ATATTA ATAATA ATAA
1 ATAA-TA ATAATA ATAATA ATAA
95560 AATTGACAAG
Statistics
Matches: 90, Mismatches: 14, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
5 11 0.12
6 55 0.61
7 16 0.18
8 8 0.09
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (6 bp):
ATAATA
Found at i:104664 original size:20 final size:21
Alignment explanation
Indices: 104639--104700 Score: 81
Period size: 22 Copynumber: 3.0 Consensus size: 21
104629 TTTTTGTGCA
*
104639 GAGGGAATCGA-TCCCCCCAT
1 GAGGGAACCGATTCCCCCCAT
**
104659 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCAT
104680 GAAGGGAACCGATTCCCCCCA
1 G-AGGGAACCGATTCCCCCCA
104701 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 10 0.29
21 8 0.23
22 17 0.49
ACGTcount: A:0.24, C:0.35, G:0.24, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCAT
Found at i:104708 original size:43 final size:42
Alignment explanation
Indices: 104640--104720 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
104630 TTTTGTGCAG
* * *
104640 AGGGAATCGATCCCCCCATGAGGGAACCGATTCCCCCTTTGA
1 AGGGAACCGATCCCCCCAAGAGGGAACCGATACCCCCTTTGA
*
104682 AGGGAACCGATTCCCCCCACAG-GGGAATCGATACCCCCT
1 AGGGAACCGA-TCCCCCCA-AGAGGGAACCGATACCCCCT
104721 GGGGTTCTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 9 0.27
43 23 0.70
44 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.16
Consensus pattern (42 bp):
AGGGAACCGATCCCCCCAAGAGGGAACCGATACCCCCTTTGA
Done.