genome.fa.s889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000889.1 Hibiscus syriacus cultivar Beakdansim tig00001739_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35355

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1526--1594	31	2.3	31	84	2	86	33	8	20	37	1.83
5494--5535	21	2.0	22	85	4	59	23	7	11	57	1.59
6855--6912	28	2.1	27	90	6	91	46	6	12	34	1.68
11254--11292	17	2.3	17	95	0	69	15	10	30	43	1.80
16325--16505	60	3.2	60	65	18	170	27	17	14	40	1.89
16301--16518	108	2.0	108	98	0	418	27	16	15	40	1.88
16442--16606	33	5.0	32	73	6	109	27	13	16	41	1.87
16591--16647	24	2.4	24	96	0	105	26	7	19	47	1.74
16642--16711	36	1.9	36	82	5	88	30	15	10	44	1.79
18884--19019	62	2.2	61	78	1	146	29	11	11	47	1.74
22142--22206	22	3.2	21	83	14	84	4	23	52	20	1.65
22135--22192	27	2.1	27	96	0	107	6	24	50	18	1.72
22142--22205	5	12.8	5	85	9	78	3	23	53	20	1.60
29416--29453	7	5.4	7	93	0	67	26	26	28	18	1.98
29450--29498	5	9.8	5	82	12	57	4	22	53	20	1.63
29443--29487	22	2.0	22	100	0	90	8	22	51	17	1.73
29495--29561	10	7.0	9	83	5	62	29	29	25	14	1.95
29501--29554	10	5.6	10	80	6	67	29	29	24	16	1.97
29495--29561	29	2.3	29	78	16	77	29	29	25	14	1.95
32815--33212	136	2.9	136	85	4	469	44	13	11	30	1.80
32897--33278	136	2.8	135	83	4	462	44	12	11	30	1.78
33473--33525	21	2.5	21	87	0	79	20	24	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33515--33620	20	5.3	20	94	0	185	42	19	16	20	1.89
33614--33720	20	5.3	20	96	0	187	29	27	19	23	1.98
33515--33627	60	1.9	60	96	0	208	41	20	17	20	1.90
33534--33721	60	3.1	60	81	7	170	35	23	18	22	1.95
34546--34598	23	2.2	24	93	3	90	20	16	20	41	1.90

Tables:   1

The End!