genome.fa.s8890.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008890.1 Hibiscus syriacus cultivar Beakdansim tig00112155_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142419

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4585--4624	21	1.9	21	89	0	62	25	40	25	10	1.86
10973--11015	19	2.3	18	84	15	52	65	11	2	20	1.36
11937--12012	24	3.2	24	98	0	143	40	17	14	27	1.88
15321--15386	21	3.2	21	71	4	71	22	19	24	33	1.97
15342--15434	20	4.6	20	71	2	87	17	22	21	38	1.93
15320--15411	41	2.2	41	90	0	139	20	20	22	35	1.96
15534--15573	6	7.2	6	97	2	59	27	55	17	0	1.43
15536--15576	5	7.6	5	97	2	55	26	53	19	0	1.45
16064--16090	6	4.5	6	100	0	54	0	14	51	33	1.43
16191--16243	22	2.4	22	93	0	97	37	28	16	16	1.91
17438--17514	20	3.7	20	76	17	68	24	25	19	29	1.98
20285--20343	26	2.3	26	96	0	109	47	16	10	25	1.78
23862--23888	13	2.1	13	100	0	54	44	7	40	7	1.60
26253--26279	5	5.4	5	100	0	54	77	0	0	22	0.76
28221--28254	3	11.3	3	100	0	68	67	0	32	0	0.91
29880--29922	17	2.5	17	100	0	86	34	0	4	60	1.17
30056--30109	27	1.9	29	85	7	76	48	0	3	48	1.19
31278--31326	23	2.1	23	84	0	62	61	10	10	18	1.55
35091--35165	30	2.5	30	95	0	132	16	14	24	45	1.84
42539--42589	23	2.2	23	85	3	66	25	0	9	64	1.24
42856--42952	54	1.9	50	84	14	128	47	5	4	43	1.44
43654--43700	2	24.0	2	95	4	87	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44501--44528	3	9.3	3	100	0	56	0	32	0	67	0.91
45541--45574	16	2.1	16	94	0	59	32	8	26	32	1.87
57045--57105	31	2.0	31	83	0	77	42	18	14	24	1.88
58324--58362	14	2.8	14	84	0	51	25	0	17	56	1.41
58469--58506	13	2.8	13	92	8	58	26	0	23	50	1.50
58494--58549	21	2.7	21	83	2	60	28	0	25	46	1.53
58469--58541	14	5.3	14	80	3	67	26	0	24	49	1.51
58432--58541	55	2.0	55	85	0	148	27	0	25	46	1.59
59742--59831	42	2.1	41	82	13	112	30	27	21	21	1.98
59753--59833	21	4.0	21	88	4	114	29	28	22	19	1.98
61360--61417	20	2.7	20	81	10	62	25	22	20	31	1.98
61477--61516	18	2.2	19	86	13	57	20	32	17	30	1.95
61697--61735	17	2.3	17	100	0	78	30	41	0	28	1.57
64951--65022	18	3.8	18	90	5	90	30	31	16	20	1.95
75435--75471	13	2.8	13	87	0	56	16	45	21	16	1.84
75430--75500	18	4.2	17	76	20	78	18	46	21	14	1.83
75430--75489	31	1.9	31	93	0	102	18	46	21	13	1.83
77999--78089	24	3.8	24	83	2	112	26	17	18	37	1.93
78166--78240	35	2.1	35	95	0	132	10	28	26	34	1.90
79519--79558	8	5.5	8	77	22	52	15	40	25	20	1.90
79510--79558	13	3.6	13	88	5	62	14	40	22	22	1.90
79861--79895	17	2.1	17	100	0	70	31	11	11	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82050--82140	24	3.8	24	83	2	121	27	16	18	37	1.92
82218--82292	35	2.1	35	95	0	132	10	28	28	33	1.90
84538--84623	6	14.5	6	83	7	86	68	0	1	30	0.97
84538--84623	9	9.7	9	79	3	86	68	0	1	30	0.97
84544--84623	15	5.3	15	80	0	88	68	0	1	30	0.97
84547--84623	30	2.6	30	87	4	111	68	0	1	29	0.97
89467--89678	21	10.1	21	73	15	179	21	18	21	38	1.93
89486--89678	42	4.6	42	94	0	341	20	19	22	37	1.94
90249--90280	3	10.7	3	93	0	55	0	3	62	34	1.11
90249--90284	9	4.0	9	96	0	54	0	5	61	33	1.19
90890--90934	21	2.1	21	100	0	90	44	8	4	42	1.56
94988--95037	20	2.5	21	80	6	59	40	0	6	54	1.25
96729--96769	2	20.5	2	85	9	57	48	2	2	46	1.28
97380--97416	17	2.2	17	100	0	74	10	16	0	72	1.10
102917--102971	23	2.4	23	93	6	94	29	5	18	47	1.71
103086--103132	22	2.1	23	84	4	60	51	4	0	44	1.21
106337--106371	15	2.3	15	95	0	61	37	31	11	20	1.88
106978--107283	117	2.6	116	85	5	350	15	32	19	31	1.94
107041--107290	117	2.1	117	88	0	392	15	32	20	32	1.94
107060--107369	117	2.6	116	84	4	365	15	30	20	33	1.94
110619--110669	12	4.3	12	76	18	54	31	0	1	66	1.03
110654--110702	14	3.8	14	69	20	52	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110718--110763	19	2.5	19	86	10	60	43	2	0	54	1.12
111249--111308	31	1.9	31	89	0	93	41	10	8	40	1.69
113212--113250	18	2.2	18	90	0	60	30	30	15	23	1.95
117798--117879	32	2.6	32	86	0	92	35	18	12	34	1.88
117835--117887	16	3.2	18	71	20	60	32	16	13	37	1.88
117825--117905	32	2.5	32	89	0	117	33	12	13	40	1.82
119643--119682	21	2.0	21	95	5	73	25	27	12	35	1.92
121418--121510	21	4.6	20	79	4	105	39	18	23	18	1.92
121415--121510	41	2.3	41	96	0	174	40	17	22	18	1.91
121437--121571	41	3.3	41	82	6	132	39	20	20	20	1.93
121499--121593	20	4.7	20	81	2	91	35	24	16	23	1.95
121781--121824	22	2.0	22	95	0	79	20	45	15	18	1.85
123419--123463	18	2.5	18	85	0	63	26	42	15	15	1.87
123936--124002	20	3.4	20	83	2	82	40	23	20	14	1.90
123975--124070	19	5.6	18	69	25	75	45	22	19	11	1.82
123991--124048	14	3.9	14	79	16	71	48	25	17	8	1.75
123975--124065	32	2.8	33	94	3	166	47	23	18	10	1.80
124077--124187	32	3.4	32	91	1	168	11	18	21	47	1.80
124082--124171	14	5.9	14	71	19	72	11	17	22	48	1.78
124089--124143	19	3.2	19	69	28	59	12	14	20	52	1.73
124130--124229	19	5.5	19	74	12	68	14	22	21	43	1.87
124172--124226	20	2.8	19	89	5	83	16	25	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126093--126128	14	2.6	14	90	0	54	30	0	22	47	1.52
126680--126715	14	2.6	14	90	0	54	30	0	22	47	1.52
127267--127302	14	2.6	14	90	0	54	30	0	22	47	1.52
127855--127890	14	2.6	14	90	0	54	30	0	22	47	1.52
125845--128853	587	5.1	589	99	0	5883	31	12	19	36	1.88
128443--128478	14	2.6	14	90	0	54	30	0	22	47	1.52
129720--129778	24	2.5	24	82	0	73	28	16	18	35	1.93
129953--129977	12	2.1	12	100	0	50	72	0	28	0	0.86
130679--130772	20	4.7	20	80	2	89	23	18	24	34	1.96
130700--130834	41	3.3	41	81	4	130	20	21	20	37	1.94
130761--130853	20	4.6	20	78	4	96	18	24	18	38	1.92
130761--130856	41	2.3	41	98	0	183	18	23	17	39	1.92
133458--133511	17	3.3	16	79	10	56	22	33	27	16	1.95
133547--133588	15	2.7	16	85	7	59	26	30	26	16	1.97
137238--137603	113	3.3	113	93	0	610	44	13	15	25	1.84
137461--138140	182	3.8	182	85	8	979	41	12	16	28	1.86
137720--138057	162	2.1	162	94	0	595	42	12	16	28	1.85
138926--138973	23	2.1	23	92	0	78	37	18	8	35	1.81
139164--139190	14	1.9	14	100	0	54	40	7	14	37	1.74
140436--140462	2	13.5	2	100	0	54	51	0	0	48	1.00
141227--141260	2	17.0	2	100	0	68	50	0	0	50	1.00
141721--141773	21	2.5	21	84	0	70	22	24	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141763--141851	20	4.4	20	85	2	115	37	22	21	19	1.95
141739--141851	41	2.8	40	82	2	100	34	22	20	23	1.97

Tables:   1

The End!