genome.fa.s8891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008891.1 Hibiscus syriacus cultivar Beakdansim tig00112157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94095

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3365--3403	3	13.0	3	100	0	78	66	0	0	33	0.92
7035--7237	112	1.8	112	90	3	329	46	10	3	38	1.58
13056--13175	59	2.1	58	90	4	188	25	16	21	36	1.94
13294--13328	12	3.0	12	87	4	54	11	17	8	62	1.52
13655--13709	23	2.3	26	82	17	75	72	5	21	0	1.04
13658--13709	22	2.2	25	83	10	65	73	5	21	0	1.04
17657--17792	59	2.5	54	84	10	163	20	16	25	36	1.94
17688--17808	59	2.1	59	95	0	215	23	19	23	33	1.97
19654--19680	2	13.5	2	100	0	54	48	0	0	51	1.00
20218--20242	13	1.9	13	100	0	50	32	4	24	40	1.73
21576--21615	17	2.3	18	86	4	55	60	2	2	35	1.24
22099--22150	24	2.2	24	86	3	70	11	23	17	48	1.79
22106--22151	24	2.0	23	91	4	74	10	23	17	47	1.79
24557--24589	3	11.0	3	93	0	57	69	0	30	0	0.88
29650--29695	24	1.9	24	82	8	58	15	10	4	69	1.32
39811--39846	13	2.8	13	100	0	72	47	0	30	22	1.52
39933--39991	27	2.2	27	84	3	75	37	6	3	52	1.45
41265--41298	9	3.7	9	84	7	50	23	0	2	73	0.97
42099--42151	25	2.1	25	100	0	106	28	13	18	39	1.88
42203--42248	24	1.9	24	100	0	92	34	17	17	30	1.93
49548--49611	31	2.1	31	100	0	128	21	7	15	54	1.66
50887--50963	32	2.4	32	89	4	111	15	10	19	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55967--56045	37	2.1	38	85	2	106	22	17	20	39	1.92
55901--56214	116	2.7	116	84	0	448	23	18	23	34	1.97
56098--56170	37	2.0	37	97	0	137	21	17	21	38	1.93
56158--56269	42	2.7	42	80	4	129	27	22	28	21	1.99
58490--58556	8	8.8	8	85	8	86	0	16	0	83	0.64
58488--58569	15	5.5	15	84	11	98	1	15	0	82	0.72
58483--58569	23	3.8	23	89	8	126	2	14	0	82	0.76
58488--58581	29	3.1	30	82	14	113	2	15	0	81	0.78
58488--58569	7	11.1	7	81	18	96	1	15	0	82	0.72
58841--58870	2	15.0	2	100	0	60	50	0	0	50	1.00
60935--60966	13	2.6	13	90	9	50	43	15	15	25	1.86
62696--62741	24	1.9	24	82	8	58	69	0	6	23	1.11
67497--67526	7	4.4	7	91	8	53	60	0	0	40	0.97
67853--67935	37	2.2	38	95	2	150	19	20	22	37	1.94
67787--68093	116	2.6	116	88	2	454	22	19	24	33	1.97
67985--68056	37	1.9	37	97	0	135	22	15	20	41	1.89
70374--70438	6	11.5	6	85	11	77	0	15	0	84	0.62
70371--70446	14	4.9	16	75	16	72	1	14	0	84	0.69
70373--70446	22	3.3	21	78	17	78	1	14	0	83	0.71
70371--70438	11	6.1	11	79	16	77	0	14	0	85	0.60
70371--70445	10	7.5	10	77	19	61	1	14	0	84	0.70
72727--72776	26	2.0	25	88	4	73	48	12	14	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72723--72767	13	3.6	13	88	5	67	44	13	15	26	1.83
77246--77301	2	28.5	2	96	3	105	50	0	0	50	1.00
81386--81431	21	2.1	22	88	4	67	32	10	2	54	1.47
82316--82405	19	4.3	20	74	16	76	35	4	27	32	1.77
82706--82745	6	6.8	6	91	2	64	0	17	50	32	1.47
82795--82842	20	2.4	20	100	0	96	22	20	29	27	1.99
84110--84179	23	3.2	23	66	15	67	30	7	22	40	1.81
84097--84183	42	2.1	42	97	0	165	29	6	25	37	1.82
84485--84697	105	2.0	107	90	4	342	21	11	18	48	1.80
86039--86077	21	1.9	21	89	5	62	20	25	23	30	1.98
86105--86160	17	3.3	17	92	0	94	21	46	19	12	1.83
86150--86180	7	4.4	7	100	0	62	16	29	29	25	1.96
93267--93363	10	10.3	9	78	11	97	14	25	30	28	1.95
93267--93363	19	5.2	18	83	10	106	14	25	30	28	1.95
93245--93334	29	3.0	29	85	8	110	20	23	26	30	1.98
93360--93397	17	2.2	17	95	0	67	18	47	26	7	1.76

Tables:   1

The End!