genome.fa.s8892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008892.1 Hibiscus syriacus cultivar Beakdansim tig00112158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110508

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--261	36	5.2	37	72	14	143	20	18	23	37	1.94
178--264	37	2.4	37	86	7	115	21	16	22	39	1.92
1--302	114	2.6	114	86	4	428	22	19	23	34	1.97
195--265	37	1.9	36	94	2	124	22	15	19	42	1.89
2547--2611	7	9.4	7	82	15	82	0	12	0	87	0.54
2548--2611	6	10.5	6	88	11	71	0	12	0	87	0.54
2546--2611	20	3.1	22	85	14	95	0	12	0	87	0.53
2545--2611	28	2.5	28	83	13	95	0	11	0	88	0.53
2548--2611	27	2.3	27	86	10	94	0	12	0	87	0.54
2547--2619	21	3.3	22	82	16	89	1	12	0	86	0.64
2547--2619	27	2.8	26	75	21	73	1	12	0	86	0.64
2545--2607	1	63.0	1	77	0	63	0	11	0	88	0.50
2545--2635	46	2.0	43	83	6	110	4	13	1	81	0.90
4840--4881	13	3.5	12	84	9	59	42	14	16	26	1.86
13331--13377	21	2.2	22	88	3	69	34	10	2	53	1.48
14254--14343	19	4.3	20	74	16	76	35	4	27	32	1.77
14646--14685	6	6.8	6	91	2	64	0	17	50	32	1.47
14735--14782	20	2.4	20	100	0	96	22	20	29	27	1.99
16043--16112	23	3.2	23	66	15	67	30	7	22	40	1.81
16030--16116	42	2.1	42	97	0	165	29	6	25	37	1.82
16418--16632	107	2.0	108	94	0	378	21	12	18	47	1.81
17980--18018	21	1.9	21	89	5	62	20	25	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18046--18101	17	3.3	17	92	0	94	21	46	19	12	1.83
18091--18121	7	4.4	7	100	0	62	16	29	29	25	1.96
25282--25375	10	9.8	9	76	13	80	17	26	27	28	1.97
25303--25400	19	5.2	18	82	12	108	14	27	30	27	1.95
25283--25375	29	3.2	28	87	6	123	16	26	27	29	1.97
25396--25434	17	2.3	17	100	0	78	17	46	23	12	1.83
25424--25454	7	4.4	7	100	0	62	16	29	29	25	1.96
28755--28779	2	12.5	2	100	0	50	52	48	0	0	1.00
32507--32553	20	2.4	20	96	3	87	8	0	21	70	1.14
32872--33010	70	2.0	71	83	7	176	33	10	9	46	1.71
36903--37309	171	2.4	169	78	5	383	28	15	17	38	1.90
37248--37360	59	1.9	59	85	3	156	27	16	19	36	1.93
42442--42479	20	1.9	20	88	0	58	21	23	23	31	1.98
48406--48432	14	1.9	14	100	0	54	59	7	0	33	1.25
50543--50588	23	2.1	23	88	8	69	56	2	0	41	1.11
53309--53368	31	1.9	31	93	0	102	36	18	21	23	1.95
57417--57472	22	2.5	22	77	5	60	48	3	0	48	1.19
57874--57938	27	2.4	27	78	12	71	47	0	4	47	1.22
58912--58941	14	2.1	14	93	0	51	46	20	13	20	1.83
58990--59044	19	2.9	18	83	8	56	36	9	16	38	1.80
59214--59257	2	22.0	2	100	0	88	50	0	0	50	1.00
59849--59895	21	2.2	21	96	0	85	17	10	21	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67097--67148	21	2.5	21	81	3	61	38	19	25	17	1.93
67137--67250	20	5.7	20	83	6	113	31	25	18	24	1.97
67134--67250	61	1.9	61	85	0	162	33	24	17	23	1.97
67806--67850	19	2.4	19	84	0	63	48	24	15	11	1.77
67846--68030	19	10.1	19	76	14	165	11	21	22	44	1.85
67846--68030	33	5.1	38	78	12	165	11	21	22	44	1.85
67973--68030	20	2.9	20	80	10	64	13	24	18	43	1.87
70667--70720	24	2.2	24	90	0	81	38	20	16	24	1.92
71781--71838	20	2.9	20	94	0	98	37	22	22	17	1.93
71842--71915	19	4.5	16	83	16	66	13	20	18	47	1.82
71838--71905	19	3.8	19	87	12	101	13	22	17	47	1.82
72022--72058	14	2.6	14	86	0	56	48	21	0	29	1.50
73920--73986	19	3.5	19	83	4	89	37	23	23	14	1.93
73975--74032	14	3.9	14	79	16	71	48	25	17	8	1.75
73959--74037	32	2.4	33	95	2	142	46	24	18	10	1.80
74066--74123	14	3.9	14	79	16	71	10	17	24	48	1.78
74049--74139	32	2.8	33	93	3	166	10	18	23	47	1.80
74124--74178	20	2.8	19	86	8	74	14	23	25	36	1.93
74659--74703	18	2.5	18	88	0	72	13	15	44	26	1.83
76022--76059	20	1.9	20	88	0	58	50	21	15	13	1.78
76316--76364	22	2.3	21	83	10	64	22	14	42	20	1.88
76322--76365	22	2.0	22	90	0	70	20	15	43	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76554--76606	20	2.7	20	93	0	88	24	18	28	28	1.98
76554--76649	20	4.7	20	78	5	84	22	17	23	35	1.95
80974--81010	18	2.1	18	100	0	74	54	18	0	27	1.44
82807--82834	13	2.2	13	100	0	56	39	0	46	14	1.44
83389--83427	12	3.4	12	93	6	64	41	0	12	46	1.42
83475--83519	2	22.5	2	100	0	90	48	0	0	51	1.00
88617--88672	25	2.3	25	93	3	96	32	21	0	46	1.52
91229--91261	17	1.9	17	93	0	57	36	39	0	24	1.56
94992--95039	22	2.2	22	82	14	55	39	8	4	47	1.53
104079--104125	21	2.2	21	77	7	51	6	14	6	72	1.25
108425--108480	23	2.5	23	97	2	105	53	14	0	32	1.41

Tables:   1

The End!