Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008894.1 Hibiscus syriacus cultivar Beakdansim tig00112162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40496
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:3178 original size:25 final size:25
Alignment explanation
Indices: 3147--3213 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
3137 ATTATGCTTG
3147 AAGAAAAAAAAAGAAAA-AAAAAAGA
1 AAGAAAAAAAAAGAAAATAAAAAA-A
* *
3172 GAGAAAAAAATAGAAAATAAAAAAA
1 AAGAAAAAAAAAGAAAATAAAAAAA
*
3197 AAGAGAAGAAAAAGAAA
1 AAGA-AAAAAAAAGAAA
3214 GGGGGTCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 19 0.54
26 16 0.46
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (25 bp):
AAGAAAAAAAAAGAAAATAAAAAAA
Found at i:3208 original size:29 final size:26
Alignment explanation
Indices: 3146--3209 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 26
3136 TATTATGCTT
3146 GAAGAAAAAAAAAGAAAAAAAAAAGAGA
1 GAAGAAAAAAAAA-AAAAAAAAAA-AGA
*
3174 GAA-AAAAATAGAAAATAAAAAAAAAGA
1 GAAGAAAAA-A-AAAAAAAAAAAAAAGA
3201 GAAGAAAAA
1 GAAGAAAAA
3210 GAAAGGGGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 11 0.34
28 18 0.56
29 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (26 bp):
GAAGAAAAAAAAAAAAAAAAAAAAGA
Found at i:3214 original size:15 final size:14
Alignment explanation
Indices: 3146--3214 Score: 72
Period size: 13 Copynumber: 4.9 Consensus size: 14
3136 TATTATGCTT
3146 GAAGAAAAAAAA-A
1 GAAGAAAAAAAAGA
3159 GAA-AAAAAAAAGA
1 GAAGAAAAAAAAGA
3172 G-AGAAAAAAATAGA
1 GAAGAAAAAAA-AGA
* *
3186 AAATAAAAAAAAAGA
1 GAA-GAAAAAAAAGA
3201 GAAGAAAAAGAAAG
1 GAAGAAAAA-AAAG
3215 GGGGTCAAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
12 9 0.20
13 12 0.26
14 8 0.17
15 10 0.22
16 7 0.15
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (14 bp):
GAAGAAAAAAAAGA
Found at i:4549 original size:84 final size:84
Alignment explanation
Indices: 4334--4818 Score: 856
Period size: 84 Copynumber: 5.8 Consensus size: 84
4324 TATCTTAGTC
*
4334 CAATCATTGAATTTGGAAGATGAATTTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
*
4398 TGATCTGGTTGGACAGAA-
66 TGATCTGGTTGGACATAAT
4416 CAATCATTGAATTT-AGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CAATCATTGAATTTGA-AAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
4480 CTGATCTGGTTGGACATAAT
65 CTGATCTGGTTGGACATAAT
4500 CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
4565 TGATCTGGTTGGACATAAT
66 TGATCTGGTTGGACATAAT
*
4584 CAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
4649 TGATCTGGTTGGACATAAT
66 TGATCTGGTTGGACATAAT
*
4668 CAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
*
4733 TGATCTGGTTGGACAGAA-
66 TGATCTGGTTGGACATAAT
*
4751 CAATCATTGAGTTT-AGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 CAATCATTGAATTTGA-AAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
4814 CTGAT
65 CTGAT
4819 ATGATTCAGT
Statistics
Matches: 392, Mismatches: 6, Indels: 10
0.96 0.01 0.02
Matches are distributed among these distances:
82 68 0.17
83 76 0.19
84 247 0.63
85 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (84 bp):
CAATCATTGAATTTGAAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
TGATCTGGTTGGACATAAT
Found at i:5757 original size:113 final size:113
Alignment explanation
Indices: 5559--6225 Score: 1185
Period size: 113 Copynumber: 5.9 Consensus size: 113
5549 TCAAATCCAC
* *
5559 TTGATGGATCATTCATTGCCAGA-TAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 TTGATGGATCA-ACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
5623 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
65 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
5672 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
5737 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
5785 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
5850 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
5898 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
5963 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
6011 TTGATGGATCAACATTGCCAGAGAAAGTTCATGAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 TTGATGGATCAACATTGCCAGAGAAAGTTCAT-AATGAGAAGAACTCATCTGAAGAAGGAAGAAG
* * * *
6076 AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCAC
65 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
* *** *
6125 TTGATGGATTATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
6190 AGTTCATAATGAGAAGAGCTTGTTCAAC-CTTTGTTT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTT
6226 GATACTATCA
Statistics
Matches: 538, Mismatches: 14, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
112 17 0.03
113 417 0.78
114 104 0.19
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (113 bp):
TTGATGGATCAACATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
Found at i:6546 original size:3 final size:3
Alignment explanation
Indices: 6538--6650 Score: 190
Period size: 3 Copynumber: 37.7 Consensus size: 3
6528 TTTTTATCCA
* *
6538 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
6586 TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
6634 CAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
6651 AATATATTAA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 102 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7146 original size:37 final size:36
Alignment explanation
Indices: 7084--7175 Score: 89
Period size: 37 Copynumber: 2.5 Consensus size: 36
7074 CATCTGCGAA
* *
7084 AAAAAAAAAAAGGACAGAGATATAGA-ACGAGACAGAG
1 AAAAAAAAAAA-GAAAAAGATATAGAGA-GAGACAGAG
*
7121 AGACAAAAAAAAAGAAAAAGA-ATAGAGAGAGACATAG
1 A-A-AAAAAAAAAGAAAAAGATATAGAGAGAGACAGAG
*
7158 AAAAAAAAACAGAGAAAA
1 AAAAAAAAAAAGA-AAAA
7176 TACAAACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
35 10 0.21
36 5 0.11
37 15 0.32
38 8 0.17
39 9 0.19
ACGTcount: A:0.68, C:0.07, G:0.21, T:0.04
Consensus pattern (36 bp):
AAAAAAAAAAAGAAAAAGATATAGAGAGAGACAGAG
Found at i:7991 original size:19 final size:17
Alignment explanation
Indices: 7959--8006 Score: 78
Period size: 19 Copynumber: 2.7 Consensus size: 17
7949 TAGATTTTTA
7959 ATTTTATTTTTTCATTT
1 ATTTTATTTTTTCATTT
7976 ATTTTATATGTTTTCATTT
1 ATTTTAT-T-TTTTCATTT
7995 ATTTTATTTTTT
1 ATTTTATTTTTT
8007 AAATATATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.38
18 2 0.07
19 16 0.55
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (17 bp):
ATTTTATTTTTTCATTT
Found at i:8072 original size:13 final size:13
Alignment explanation
Indices: 8044--8078 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
8034 TTTTATTATA
8044 TTATTAAATA-TT
1 TTATTAAATATTT
8056 TTATTAAATATTT
1 TTATTAAATATTT
8069 TTA-TAAATAT
1 TTATTAAATAT
8079 ATAAATAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATTAAATATTT
Found at i:8839 original size:20 final size:20
Alignment explanation
Indices: 8814--8964 Score: 99
Period size: 20 Copynumber: 7.5 Consensus size: 20
8804 TTAAAGATGA
8814 TTGCGATTTTCAGAATCGCG
1 TTGCGATTTTCAGAATCGCG
**
8834 TTGCGAAAGTT-AGAATCGCG
1 TTGCG-ATTTTCAGAATCGCG
***
8854 TTGCGAAAGTCAGAATCGCG
1 TTGCGATTTTCAGAATCGCG
*** *
8874 TTGCGAAAGTCAGTATCGCG
1 TTGCGATTTTCAGAATCGCG
* **
8894 TTGCGATTTTGTATTATCGCG
1 TTGCGATTTT-CAGAATCGCG
** * *
8915 TTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCAGAATCGCG
*
8935 TTGCGATTTTCCA-AATTCGCA
1 TTGCGATTTT-CAGAA-TCGCG
8956 TTGCGATTT
1 TTGCGATTT
8965 ACTTATTCGC
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.03
20 70 0.65
21 35 0.32
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCGCG
Found at i:8869 original size:40 final size:40
Alignment explanation
Indices: 8823--8899 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
8813 ATTGCGATTT
*
8823 TCAGAATCGCGTTGCGAAAGTTAGAATCGCGTTGCGAAAG
1 TCAGAATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAG
*
8863 TCAGAATCGCGTTGCGAAAGTCAGTATCGCGTTGCGA
1 TCAGAATCGCGTTGCGAAAGTCAGAATCGCGTTGCGA
8900 TTTTGTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (40 bp):
TCAGAATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAG
Found at i:8960 original size:41 final size:41
Alignment explanation
Indices: 8813--8962 Score: 135
Period size: 41 Copynumber: 3.7 Consensus size: 41
8803 TTTAAAGATG
* * * *
8813 ATTGCGATTTTCAGA-ATCGCGTTGCGAAAGTTAGAATCGC
1 ATTGCGATTTTCAAATATCGCGTTGCGATAGTCAGTATCGC
* *** * *
8853 GTTGCGAAAGTCAGA-ATCGCGTTGCGAAAGTCAGTATCGC
1 ATTGCGATTTTCAAATATCGCGTTGCGATAGTCAGTATCGC
* ** *
8893 GTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGTATCGC
1 ATTGCGATTTTCAAATATCGCGTTGCGATAGTCAGTATCGC
*
8934 ATTGCGATTTTCCAAAT-TCGCATTGCGAT
1 ATTGCGATTTT-CAAATATCGCGTTGCGAT
8963 TTACTTATTC
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
40 42 0.47
41 45 0.51
42 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (41 bp):
ATTGCGATTTTCAAATATCGCGTTGCGATAGTCAGTATCGC
Found at i:8974 original size:20 final size:21
Alignment explanation
Indices: 8930--8981 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
8920 ATAGTCAGTA
*
8930 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
8951 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
8971 TCGCATTGCGA
1 TCGCATTGCGA
8982 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:10670 original size:60 final size:60
Alignment explanation
Indices: 10549--10675 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
10539 GAGGAGCCGT
* * * **
10549 GGAGGACAAACAAGGAAGGAGCAACTGGGGAGAGAAGGGTATCAGGAGCTGGGAAGCAAA
1 GGAGGACAAACAAGGAAGGAGCAACTAGGAAGAGAAGGGTACCAGGAAATGGGAAGCAAA
* * *
10609 GGAGGACAAACAAGGAAGGAGCAGA-TAGGAAGTGAAGGGTACCAGGAAATGGGCAGGAAA
1 GGAGGACAAACAAGGAAGGAGCA-ACTAGGAAGAGAAGGGTACCAGGAAATGGGAAGCAAA
*
10669 GGCGGAC
1 GGAGGAC
10676 TCAGTACCAC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 56 0.98
61 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.42, T:0.06
Consensus pattern (60 bp):
GGAGGACAAACAAGGAAGGAGCAACTAGGAAGAGAAGGGTACCAGGAAATGGGAAGCAAA
Found at i:11215 original size:29 final size:27
Alignment explanation
Indices: 11154--11210 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
11144 ATCTTTTCTC
**
11154 TTGTTTTTTACACACTAAATATTTTGT
1 TTGTTTTTTACACACTAAATATTAGGT
* *
11181 TTGTTTTTTATACACTAAATGTTAGGT
1 TTGTTTTTTACACACTAAATATTAGGT
11208 TTG
1 TTG
11211 AGTTTGCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.54
Consensus pattern (27 bp):
TTGTTTTTTACACACTAAATATTAGGT
Found at i:20718 original size:18 final size:18
Alignment explanation
Indices: 20690--20784 Score: 118
Period size: 18 Copynumber: 5.2 Consensus size: 18
20680 CAAAAGTCGA
20690 GGGATTATAGTGGTCATTC
1 GGGA-TATAGTGGTCATTC
20709 GGGATATAGTGGTCATTC
1 GGGATATAGTGGTCATTC
* * *
20727 GAGACATAGTGGTCCTTC
1 GGGATATAGTGGTCATTC
* * *
20745 GGGACATATTGGTTATTC
1 GGGATATAGTGGTCATTC
*
20763 GGGATATAGTGGTCCTTC
1 GGGATATAGTGGTCATTC
20781 GGGA
1 GGGA
20785 CAAATATTCA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
18 61 0.94
19 4 0.06
ACGTcount: A:0.21, C:0.14, G:0.33, T:0.33
Consensus pattern (18 bp):
GGGATATAGTGGTCATTC
Found at i:26191 original size:18 final size:18
Alignment explanation
Indices: 26160--26231 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
26150 ACTGAATATT
*
26160 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
*
26178 TGTCCTGAAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* **
26197 TTGT-TCGAAAAACCACTA
1 -TGTCCCGAAGGACCACTA
26215 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
26232 CCTTAAAAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
17 3 0.07
18 26 0.62
19 10 0.24
20 3 0.07
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:30431 original size:18 final size:18
Alignment explanation
Indices: 30409--30498 Score: 155
Period size: 18 Copynumber: 5.1 Consensus size: 18
30399 TCGAGGGATT
* *
30409 ATAGTGGTCCTTCGGGAT
1 ATAGTGGTCATTCGGGAC
30427 ATAGTGGTCATTCGGGAC
1 ATAGTGGTCATTCGGGAC
30445 ATAGTGGTCATTCGGGAC
1 ATAGTGGTCATTCGGGAC
30463 ATAGTGGTCATTC-GGAC
1 ATAGTGGTCATTCGGGAC
30480 ATAGTGGTCATTCGGGAC
1 ATAGTGGTCATTCGGGAC
30498 A
1 A
30499 AATATTCAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
17 17 0.25
18 52 0.75
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (18 bp):
ATAGTGGTCATTCGGGAC
Found at i:34248 original size:20 final size:20
Alignment explanation
Indices: 34193--34238 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
34183 GAACCACAAG
*
34193 GAACCGTTCAAACCGGCTTT
1 GAACCGTTCGAACCGGCTTT
34213 GAACCGTTCGAACCGGCTTT
1 GAACCGTTCGAACCGGCTTT
34233 GAACCG
1 GAACCG
34239 CTTGAGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (20 bp):
GAACCGTTCGAACCGGCTTT
Found at i:36972 original size:5 final size:5
Alignment explanation
Indices: 36964--36989 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36954 TTTTATTATT
36964 TCGGG TCGGG TCGGG TCGGG TCGGG T
1 TCGGG TCGGG TCGGG TCGGG TCGGG T
36990 TTCTAAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.58, T:0.23
Consensus pattern (5 bp):
TCGGG
Done.