genome.fa.s8895.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008895.1 Hibiscus syriacus cultivar Beakdansim tig00112164_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106631

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375--412	20	1.9	20	94	0	67	39	10	26	23	1.87
375--418	20	2.3	19	84	7	63	40	9	27	22	1.84
1797--1858	6	10.8	6	88	10	85	0	46	0	53	1.00
3700--3871	60	2.9	58	82	10	213	42	4	20	32	1.73
7122--7177	10	5.7	9	84	16	67	26	32	28	12	1.93
7122--7177	20	2.8	20	94	0	94	26	32	28	12	1.93
7144--7214	37	2.0	37	86	8	103	28	33	28	9	1.89
7266--7350	29	2.9	29	92	0	134	22	29	35	12	1.91
7409--7465	29	2.0	29	96	0	105	21	31	33	14	1.92
8795--8878	44	1.9	43	85	7	116	57	2	4	35	1.33
9333--9414	37	2.2	37	81	10	96	43	0	3	52	1.18
9847--9884	20	1.9	20	89	10	60	47	5	21	26	1.71
12171--12220	10	5.0	10	82	0	55	26	30	0	44	1.55
12256--12289	9	3.9	9	84	7	52	35	0	2	61	1.11
12255--12293	17	2.4	17	95	4	71	33	0	5	61	1.18
15968--15996	12	2.3	13	94	5	51	0	17	0	82	0.66
18238--18320	29	2.8	29	92	1	139	43	9	14	32	1.78
23004--23086	29	2.8	29	92	1	139	43	9	14	32	1.78
27275--27321	23	2.0	23	91	0	76	27	17	19	36	1.93
27266--27315	12	4.2	12	73	14	50	30	12	20	38	1.88
28922--29017	7	13.7	7	83	0	93	20	2	33	43	1.64
28924--29018	35	2.7	35	85	3	120	21	2	32	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28913--29017	42	2.5	42	89	4	149	21	1	33	42	1.64
28965--29032	28	2.4	28	76	13	77	25	1	27	45	1.62
28963--29042	35	2.3	34	82	4	88	25	1	30	43	1.62
29113--29186	7	10.7	7	72	8	62	18	1	37	41	1.59
29117--29186	21	3.4	21	76	2	79	18	1	35	44	1.59
30952--31075	50	2.5	50	82	5	151	17	33	30	17	1.94
34718--34790	26	2.8	26	67	24	64	64	4	6	24	1.36
37046--37084	20	2.0	19	90	5	60	43	0	23	33	1.54
37196--37322	51	2.5	51	85	1	166	17	31	33	18	1.94
46185--46252	19	3.5	20	71	15	54	39	2	2	54	1.31
46194--46243	20	2.5	20	78	12	59	38	2	4	56	1.30
46161--46247	31	2.8	30	81	6	93	41	1	3	54	1.25
46968--47035	31	2.2	31	84	7	84	54	4	1	39	1.30
46967--47030	19	3.2	20	75	14	53	53	3	1	42	1.26
46968--47051	31	2.7	31	81	3	80	54	4	1	39	1.29
54625--54678	24	2.2	24	87	6	74	14	11	18	55	1.68
55408--55474	16	4.3	16	92	3	102	10	10	19	59	1.58
55406--55466	32	1.9	32	96	0	113	8	13	22	55	1.64
58298--58352	28	2.0	28	92	0	74	43	1	9	45	1.46
61100--61150	17	2.9	18	79	5	59	43	3	0	52	1.19
66908--66961	19	2.9	18	91	5	65	31	1	22	44	1.63
66917--66961	19	2.4	19	100	0	90	28	0	22	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81073--81156	43	2.0	41	81	6	98	23	34	17	23	1.96
80981--81337	130	2.7	131	82	6	387	27	29	17	25	1.98
84044--84073	12	2.4	12	94	5	51	33	3	16	46	1.64
84399--84433	16	2.1	17	94	5	63	34	0	17	48	1.47
88445--88474	4	7.5	4	100	0	60	26	0	23	50	1.50
93682--93722	16	2.6	16	96	0	73	39	0	21	39	1.54
93736--93767	15	2.1	15	100	0	64	34	0	43	21	1.53
94166--94253	45	1.9	46	93	2	151	27	25	19	28	1.99
94285--94355	19	3.7	19	98	0	133	21	30	21	26	1.98
97139--97211	33	2.2	33	95	0	128	28	5	12	53	1.60
105123--105178	20	2.8	20	97	0	103	23	5	21	50	1.69

Tables:   1

The End!