Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008896.1 Hibiscus syriacus cultivar Beakdansim tig00112165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70573

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2904--2964
22
2.7
23
82
5
70
18
24
32
24
1.97
8791--8830
21
1.9
21
94
0
71
30
27
12
30
1.93
9907--9960
26
2.1
26
89
0
81
25
14
27
31
1.95
18577--18634
21
2.8
21
83
0
80
18
17
31
32
1.94
22548--22642
35
2.7
35
85
1
129
41
28
1
29
1.63
23120--23414
148
2.0
148
95
0
536
48
10
5
35
1.60
25474--25569
32
3.0
29
76
14
75
19
12
26
41
1.87
26347--26385
16
2.4
16
91
0
60
7
15
28
48
1.72
31425--31466
2
21.0
2
100
0
84
50
0
0
50
1.00
35673--35722
19
2.6
19
90
0
73
44
4
8
44
1.52
36331--36374
21
2.0
22
83
12
56
45
0
6
47
1.29
39143--39632
135
3.6
135
90
2
743
24
22
18
34
1.96
40599--40643
13
3.3
14
81
12
58
4
11
0
84
0.76
40592--40648
25
2.3
25
81
6
71
7
15
0
77
0.98
40598--40635
14
2.5
16
83
12
53
5
13
0
81
0.85
52660--52697
2
19.0
2
100
0
76
50
0
0
50
1.00
54537--54583
2
23.5
2
100
0
94
48
0
0
51
1.00
55900--55958
3
20.3
3
80
13
70
59
0
0
40
0.97
56112--56895
76
10.4
76
95
1
1364
33
22
19
23
1.97
57997--58154
54
3.0
54
85
6
209
26
23
13
36
1.93
59953--60015
31
2.0
31
96
0
117
31
11
19
38
1.86
62453--62575
8
15.4
8
81
11
121
1
16
2
79
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62464--62575
7
14.3
7
82
17
116
1
16
2
79
0.93
62456--62536
15
5.4
14
80
15
74
1
14
0
83
0.70
62453--62573
53
2.1
57
85
10
160
1
16
2
79
0.92
62454--62512
1
59.0
1
75
0
55
0
11
0
88
0.53
65483--65527
23
2.0
23
90
0
72
66
4
15
13
1.39
65482--65541
23
2.8
21
82
7
66
63
5
15
16
1.47
68436--68675
132
1.8
131
81
8
290
44
10
9
36
1.71
68780--68837
2
29.0
2
100
0
116
50
0
0
50
1.00
70135--70205
3
24.3
3
75
13
60
56
0
0
43
0.99
70124--70205
19
4.2
19
75
20
80
54
0
0
45
0.99
70124--70203
11
7.0
11
75
13
72
55
0
0
45
0.99
70140--70203
17
3.6
17
82
15
69
56
0
0
43
0.99
70138--70190
24
2.2
25
86
10
74
56
0
0
43
0.99

Tables:   1

The End!