Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008898.1 Hibiscus syriacus cultivar Beakdansim tig00112170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53127

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
992--1048
21
2.7
21
94
0
96
31
14
15
38
1.87
993--1061
21
3.3
21
84
8
70
30
14
13
42
1.84
2865--2895
7
4.4
7
91
0
53
25
25
29
19
1.99
2889--2922
17
2.0
17
94
0
59
11
20
47
20
1.81
2878--2939
22
2.7
22
87
5
79
14
20
43
20
1.87
2936--3051
9
12.3
9
71
13
65
29
25
26
18
1.98
2938--3052
19
6.1
19
74
14
94
29
26
25
19
1.98
2964--3052
10
9.1
10
77
10
78
30
26
23
19
1.98
2963--3048
29
3.0
29
81
10
95
31
27
23
17
1.97
8549--8604
21
2.7
21
91
2
87
30
14
16
39
1.88
8570--8617
21
2.3
21
85
7
62
29
14
10
45
1.78
13070--13183
45
2.5
44
81
4
138
36
15
17
29
1.91
16315--16509
97
2.0
100
93
5
344
33
10
13
42
1.79
16646--16731
43
2.0
43
100
0
172
27
4
27
39
1.76
21405--21462
29
2.0
30
83
6
75
56
1
3
37
1.26
21449--21587
28
4.8
28
71
8
109
56
0
6
36
1.31
21449--21516
28
2.4
29
90
2
111
52
1
7
38
1.38
21506--21554
20
2.5
20
87
9
66
69
0
0
30
0.89
21656--21681
2
13.0
2
100
0
52
50
0
0
50
1.00
44956--44984
2
14.5
2
100
0
58
51
0
0
48
1.00
51587--51658
34
2.1
34
87
5
101
55
13
6
23
1.63

Tables:   1

The End!