genome.fa.s8899.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008899.1 Hibiscus syriacus cultivar Beakdansim tig00112172_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49919

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774--1095	112	2.9	109	87	5	430	33	16	21	28	1.95
1024--1143	48	2.5	47	83	4	134	40	15	17	26	1.90
1070--1322	112	2.2	113	85	2	339	30	15	23	29	1.96
799--1324	272	1.9	271	87	2	761	32	15	22	28	1.95
1270--1657	136	2.9	134	79	8	394	28	17	24	28	1.97
1542--2315	113	6.9	113	85	3	986	31	15	24	28	1.95
1546--2315	338	2.3	338	85	3	1021	31	15	24	28	1.95
9087--9123	15	2.5	15	90	0	56	5	67	16	10	1.38
9262--9327	28	2.4	28	94	0	114	21	36	7	34	1.82
13507--13538	3	10.3	3	93	6	55	34	0	3	62	1.11
13691--13720	3	10.0	3	100	0	60	33	0	0	66	0.92
16368--16431	23	2.6	25	73	12	69	48	1	7	42	1.41
16532--16581	23	2.2	23	82	7	57	40	10	14	36	1.79
16690--16749	23	2.6	23	86	0	84	40	10	18	31	1.84
16849--16894	23	2.0	24	82	4	58	30	13	21	34	1.91
16372--16894	158	3.3	157	90	2	771	41	11	12	34	1.79
17008--17253	74	3.4	73	82	5	309	39	13	12	34	1.82
17334--17686	112	3.2	112	88	2	539	43	12	13	29	1.81
17582--17776	90	2.2	91	92	0	320	44	14	13	27	1.84
17673--17886	111	1.9	111	91	0	349	43	14	13	28	1.83
17470--17886	201	2.1	203	90	2	662	44	13	13	28	1.82
18479--18508	7	4.3	7	95	0	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18635--18716	18	4.2	19	70	14	69	25	3	15	54	1.57
23635--23682	25	2.0	24	87	4	69	54	16	4	25	1.60
25735--26238	55	9.3	55	81	8	450	26	25	17	30	1.97
25836--25997	51	3.1	51	82	10	209	22	24	20	32	1.98
27220--27266	8	6.5	8	87	9	50	8	8	0	82	0.83
27227--27293	6	10.0	7	81	15	56	7	5	0	86	0.70
27236--27295	1	60.0	1	83	0	66	5	5	0	90	0.57
27220--27281	27	2.2	29	85	8	83	8	9	0	82	0.85
27230--27294	34	1.9	34	93	3	114	6	6	0	87	0.66
27227--27298	27	2.8	27	84	12	89	6	6	0	86	0.72
39054--39101	25	2.0	24	87	4	69	54	16	4	25	1.60
45586--45634	2	24.5	2	100	0	98	48	0	0	51	1.00
46009--46045	11	3.6	11	86	13	53	37	0	0	62	0.96
47207--47235	13	2.1	14	93	6	51	31	6	0	62	1.22
47494--47548	21	2.7	20	77	13	58	16	3	5	74	1.15

Tables:   1

The End!