Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008901.1 Hibiscus syriacus cultivar Beakdansim tig00112179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58422

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
363--404
18
2.3
18
91
0
66
52
19
2
26
1.58
375--426
20
2.6
20
88
11
72
53
17
3
25
1.60
4449--4637
41
4.7
40
83
8
213
32
16
20
30
1.95
4475--4624
80
1.9
81
91
6
252
34
18
20
27
1.96
11250--11288
13
3.0
13
88
0
60
33
17
23
25
1.96
11173--11349
99
1.8
97
82
2
228
27
18
23
31
1.97
12206--12247
19
2.2
20
82
4
50
52
0
2
45
1.13
18637--18661
5
5.0
5
100
0
50
60
0
40
0
0.97
24953--24979
13
2.1
13
100
0
54
33
14
14
37
1.88
28575--28827
70
3.6
70
92
0
416
52
17
14
15
1.75
29342--29367
3
8.7
3
100
0
52
69
30
0
0
0.89
42331--42381
25
2.0
25
100
0
102
29
15
19
35
1.93
50084--50118
2
17.5
2
100
0
70
48
0
0
51
1.00
54387--54454
35
1.9
36
84
3
93
30
11
16
41
1.84
54540--54589
20
2.5
20
96
0
91
22
26
12
40
1.88
56174--56231
23
2.6
23
88
2
82
43
8
15
32
1.77
56146--56304
84
1.9
86
84
7
218
42
12
10
33
1.77

Tables:   1

The End!