Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008903.1 Hibiscus syriacus cultivar Beakdansim tig00112181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81056

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3741--3790
24
2.1
24
88
3
75
48
10
0
42
1.37
3745--3800
24
2.4
24
82
8
62
48
7
0
44
1.30
3711--3869
39
4.2
37
67
16
101
46
4
3
45
1.41
3711--3936
114
2.0
112
83
10
287
49
3
3
43
1.37
3764--3936
90
1.9
91
81
8
210
50
2
2
43
1.31
3918--4350
93
4.6
91
81
7
381
45
6
6
41
1.57
3918--4251
97
3.6
94
84
5
346
46
7
5
40
1.56
3918--4338
190
2.2
189
81
7
468
45
6
6
41
1.58
7630--7683
24
2.2
25
80
9
67
20
9
18
51
1.73
9267--9317
22
2.3
22
100
0
102
31
39
3
25
1.74
15516--16303
394
2.0
394
99
0
1549
38
15
25
20
1.91
19966--20017
2
26.0
2
100
0
104
50
0
0
50
1.00
20361--20395
3
11.3
3
93
6
61
68
0
0
31
0.90
20363--20396
16
2.1
16
100
0
68
70
0
0
29
0.87
24072--24194
65
1.9
64
88
1
183
40
13
4
40
1.66
24491--24541
23
2.2
23
96
0
93
47
5
11
35
1.65
25155--25220
33
2.0
33
81
0
78
50
16
4
28
1.65
25814--25857
12
3.6
12
81
3
52
47
0
2
50
1.13
25814--25838
13
1.9
13
100
0
50
48
0
0
52
1.00
30394--30439
20
2.3
19
85
14
58
50
8
15
26
1.73
35828--35896
23
3.0
23
84
0
102
30
26
26
17
1.97
42180--42225
20
2.3
19
85
14
58
50
8
15
26
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47871--48202
61
5.4
61
96
0
601
25
17
16
40
1.90
54663--54702
21
1.9
21
89
0
62
15
27
25
32
1.95
59195--59244
26
1.9
26
87
0
73
28
22
26
24
1.99
62447--62513
31
2.2
31
88
0
98
44
4
22
28
1.72
79684--79743
10
6.3
10
77
16
56
81
0
13
5
0.84
79681--79739
13
4.7
13
82
14
70
83
0
13
3
0.78
79681--79739
26
2.4
25
88
5
84
83
0
13
3
0.78
80675--81026
134
2.6
134
86
4
480
34
18
22
24
1.96

Tables:   1

The End!