genome.fa.s8905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008905.1 Hibiscus syriacus cultivar Beakdansim tig00112191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61633

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--444	194	2.3	194	90	4	729	35	13	18	32	1.90
557--625	23	3.2	21	86	11	79	39	20	5	34	1.76
566--625	23	2.6	23	94	0	102	36	21	5	36	1.76
643--703	22	2.8	22	82	2	88	32	14	8	44	1.75
1069--1139	22	3.2	23	86	8	101	32	5	22	39	1.77
1541--1612	23	3.2	23	88	2	101	36	5	19	38	1.75
665--2924	471	4.8	473	88	7	3266	41	7	10	40	1.69
2012--2062	23	2.3	23	89	3	77	37	7	21	33	1.82
2377--2414	20	2.0	20	84	5	51	60	13	5	21	1.52
2498--2531	16	2.1	16	100	0	68	32	11	20	35	1.89
8586--8707	62	2.0	62	80	6	140	48	10	4	36	1.57
10194--10218	7	3.6	7	100	0	50	68	0	0	32	0.90
12700--12749	26	1.9	26	84	8	66	40	6	16	38	1.73
13619--13687	2	37.0	2	81	13	85	46	0	1	52	1.09
13671--13942	36	7.4	37	75	13	197	44	2	6	45	1.44
13950--13987	18	2.1	19	85	5	51	23	0	2	73	0.95
13967--14026	18	3.4	17	82	14	77	21	3	0	75	0.95
13965--14028	27	2.4	26	82	10	85	21	3	0	75	0.95
18636--20264	84	19.7	83	79	7	1516	30	24	20	24	1.98
18636--20247	249	6.5	249	82	6	1713	31	24	20	24	1.98
20878--20964	2	46.0	2	87	11	121	44	0	1	54	1.07
20987--21029	22	1.9	23	86	13	63	41	4	6	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21005--21062	27	2.1	27	81	6	64	41	5	6	46	1.53
21060--21170	32	3.3	31	77	17	89	48	1	3	45	1.30
21022--21176	36	4.4	35	80	11	129	46	2	3	47	1.34
21193--21254	17	3.6	17	72	19	58	24	1	0	74	0.91
21196--21259	23	2.8	24	76	9	71	25	1	0	73	0.92
21193--21256	16	3.7	17	74	15	60	25	1	0	73	0.92
22055--22147	21	4.6	20	78	4	96	38	18	24	18	1.92
22052--22147	41	2.3	41	98	0	183	39	17	23	18	1.92
22055--22147	20	4.6	20	78	4	96	38	18	24	18	1.92
22074--22208	41	3.3	41	81	6	123	37	20	21	20	1.94
22136--22230	20	4.7	20	80	2	91	34	24	17	23	1.96
22417--22460	22	2.0	22	90	0	70	22	45	13	18	1.84
22724--22761	20	1.9	20	88	0	58	13	15	21	50	1.78
24064--24108	18	2.5	18	85	0	63	26	42	15	15	1.87
24590--24645	20	2.8	20	81	2	69	39	21	23	16	1.92
24634--24691	14	3.9	14	77	16	62	50	25	15	8	1.73
24618--24708	32	2.8	33	93	3	157	48	23	17	10	1.79
24618--24713	19	5.6	18	67	25	66	46	22	18	11	1.81
24720--24830	32	3.4	32	97	1	204	9	18	24	46	1.79
24720--24871	14	8.9	18	73	18	121	11	20	24	44	1.84
24815--24869	20	2.8	19	89	5	83	16	25	23	34	1.95
26715--26750	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27297--27332	14	2.6	14	90	0	54	30	0	22	47	1.52
27886--27921	14	2.6	14	90	0	54	30	0	22	47	1.52
28467--28502	14	2.6	14	90	0	54	30	0	22	47	1.52
29052--29087	14	2.6	14	90	0	54	30	0	22	47	1.52
26471--29461	585	5.1	588	97	1	5670	31	12	19	36	1.89
30330--30388	24	2.5	24	82	0	73	28	16	18	35	1.93
30563--30587	12	2.1	12	100	0	50	72	0	28	0	0.86
30578--30615	15	2.5	15	100	0	76	52	21	21	5	1.66
32888--32985	19	5.7	19	69	22	90	43	19	24	12	1.85
32888--32981	33	2.8	33	98	0	179	43	19	24	12	1.85
32981--33023	20	2.2	20	83	4	52	18	18	20	41	1.90
33164--33200	14	2.6	14	91	0	65	45	24	0	29	1.53
34571--34651	21	3.9	21	66	6	65	23	20	33	22	1.97
34556--34678	42	2.9	41	82	7	122	22	17	36	23	1.94
35341--35415	21	3.7	21	67	19	52	14	13	41	30	1.84
36675--36860	19	10.1	19	75	15	158	44	21	21	12	1.86
36675--36860	33	5.1	38	78	10	158	44	21	21	12	1.86
36856--36926	19	3.7	19	84	1	79	11	19	23	45	1.83
37443--37494	20	2.6	20	93	0	86	25	19	28	26	1.98
37443--37536	20	4.7	20	77	2	80	24	17	24	34	1.96
37525--37620	41	2.3	41	98	0	147	18	23	17	39	1.92
37525--37617	20	4.6	20	78	4	96	18	24	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44978--45051	38	2.0	37	84	5	96	47	2	1	48	1.24
50560--50658	47	2.1	47	82	0	117	43	10	13	33	1.77
51611--51654	3	14.3	3	85	4	61	36	0	2	61	1.09
53221--53275	21	2.5	23	82	11	62	29	1	16	52	1.54
53695--53733	21	1.9	21	89	5	62	35	7	12	43	1.72
57545--57613	31	2.3	30	92	2	111	44	8	13	33	1.74
57545--57598	15	3.5	15	75	5	63	44	9	14	31	1.77
58211--58250	18	2.4	17	88	12	64	32	10	7	50	1.64
58217--58253	18	2.1	18	100	0	74	27	10	13	48	1.75

Tables:   1

The End!