genome.fa.s8906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008906.1 Hibiscus syriacus cultivar Beakdansim tig00112193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133755

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2338--2397	27	2.3	27	94	2	104	8	13	55	23	1.65
12510--12562	27	2.0	26	85	14	72	58	1	0	39	1.09
18450--18514	24	2.7	24	95	0	112	30	26	21	21	1.98
18461--18505	13	3.6	13	76	11	58	31	26	24	17	1.97
18450--18514	11	5.5	11	74	13	58	30	26	21	21	1.98
19727--19780	2	27.0	2	100	0	108	50	0	0	50	1.00
20326--20354	12	2.5	12	94	5	51	17	0	0	82	0.66
20543--20603	11	5.7	11	72	14	56	39	1	1	57	1.18
26334--26387	2	27.5	2	96	3	101	50	0	0	50	1.00
29372--29416	22	2.0	22	95	0	81	31	6	22	40	1.80
31516--31568	25	2.1	25	85	0	70	41	3	13	41	1.62
38262--38355	31	3.0	31	89	3	136	36	23	20	20	1.95
39160--39204	21	2.1	21	87	0	63	15	24	28	31	1.96
42355--42448	31	3.0	31	76	17	97	37	22	19	21	1.95
43258--43302	21	2.1	21	87	0	63	15	24	28	31	1.96
45188--45255	32	2.0	34	86	8	95	45	10	7	36	1.66
48580--48618	18	2.2	18	95	0	69	48	23	17	10	1.78
50068--50115	24	2.0	24	87	0	69	45	10	8	35	1.68
55790--55820	13	2.4	13	94	0	53	9	64	25	0	1.24
55993--56024	15	2.1	15	94	0	55	0	21	0	78	0.76
56541--56606	3	22.0	3	96	0	123	65	0	1	33	1.02
56864--57490	113	5.5	113	90	2	888	27	18	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57428--57529	40	2.5	40	85	0	150	21	20	8	49	1.76
57682--57788	40	2.7	40	92	0	187	21	23	6	48	1.73
57203--57813	254	2.3	260	82	7	783	27	19	12	40	1.88
58225--58279	22	2.5	22	87	0	83	38	14	10	36	1.81
63341--63409	23	2.9	23	80	10	77	0	15	1	82	0.74
63349--63414	17	4.0	17	80	5	82	0	18	1	80	0.79
63362--63409	19	2.6	18	84	12	62	0	18	0	81	0.70
63404--63447	22	2.0	22	90	0	70	4	13	13	68	1.36
63734--63769	2	18.0	2	100	0	72	50	0	0	50	1.00
69706--69736	13	2.4	13	94	0	53	9	64	25	0	1.24
70456--70548	3	31.0	3	93	0	159	65	0	2	32	1.04
71132--71218	21	4.2	21	85	1	79	24	24	18	33	1.97
71111--71264	20	7.6	20	81	7	125	31	24	18	25	1.98
71173--71273	20	5.1	20	87	4	132	36	23	18	20	1.95
73898--74006	21	5.2	21	80	8	114	24	33	20	21	1.97
73933--74026	21	4.5	21	78	7	84	21	36	22	20	1.95
75419--75458	14	2.9	14	84	0	62	30	0	15	55	1.41
75553--75590	20	1.9	20	100	0	76	42	26	18	13	1.87
76998--77051	24	2.2	24	93	0	90	40	20	18	20	1.91
76998--77065	24	2.8	24	84	0	64	38	20	17	23	1.93
77958--78024	20	3.4	20	83	4	82	22	17	20	38	1.93
77986--78033	20	2.4	20	92	0	78	18	16	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78027--78070	21	2.1	21	91	0	70	40	15	22	20	1.90
92212--92238	13	2.1	13	100	0	54	48	29	14	7	1.71
97636--97661	12	2.2	12	100	0	52	23	50	0	26	1.50
101530--101898	20	18.5	20	85	4	458	34	26	18	20	1.96
102572--102618	24	2.0	24	87	8	69	25	14	21	38	1.92
105120--105445	19	18.4	19	80	15	405	47	17	20	14	1.82
105120--105445	33	9.2	34	82	13	321	47	17	20	14	1.82
105148--105467	161	2.0	157	93	3	552	46	16	21	14	1.83
105148--105467	52	6.0	52	93	4	550	46	16	21	14	1.83
105474--105575	19	5.6	19	85	12	151	14	23	17	44	1.86
105682--105718	14	2.6	14	91	0	65	45	21	0	32	1.52
105713--105785	12	6.0	12	67	20	53	57	16	1	24	1.47
105699--105771	38	1.9	38	97	0	137	53	16	1	28	1.51
107647--107703	14	3.7	14	77	20	60	45	22	21	10	1.82
107628--107720	33	2.8	33	95	0	168	47	21	20	10	1.80
107591--107725	19	7.6	19	75	16	119	46	22	19	11	1.81
107721--107849	19	7.3	19	75	17	125	8	17	28	45	1.77
107721--107812	33	2.8	33	93	3	150	7	18	28	45	1.76
107893--108365	93	5.1	93	99	0	939	46	19	12	21	1.83
107893--108365	185	2.5	186	99	0	939	46	19	12	21	1.83
110060--110149	14	5.7	14	74	23	81	42	23	25	8	1.83
110052--110166	33	3.5	33	95	0	212	45	20	24	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110059--110171	19	6.8	18	72	23	88	43	22	24	9	1.83
110183--110237	14	3.6	14	73	21	56	9	25	23	41	1.83
110167--110237	33	2.2	33	94	0	124	8	22	25	43	1.81
110178--110259	33	2.5	33	89	2	119	9	25	21	42	1.84
110190--110278	20	4.8	20	72	19	75	12	24	19	43	1.85
110358--110428	33	2.2	33	92	0	115	47	18	22	11	1.80
110609--110662	22	2.5	21	78	3	63	20	16	38	24	1.92
110808--111001	20	9.6	20	82	5	221	19	19	25	35	1.95
110808--111001	60	3.2	60	83	0	253	19	19	25	35	1.95
110968--111066	21	4.8	20	72	6	72	21	19	22	37	1.94
111056--111107	20	2.6	20	96	0	95	21	13	26	38	1.90
122292--122333	22	2.0	22	85	4	59	19	7	7	66	1.39
130457--130578	42	2.9	42	90	3	183	45	17	14	22	1.84
133315--133406	33	2.8	33	100	0	184	19	14	26	40	1.89

Tables:   1

The End!