genome.fa.s8907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008907.1 Hibiscus syriacus cultivar Beakdansim tig00112201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66877

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4673--4724	13	4.2	13	80	14	74	13	21	48	17	1.81
4679--4724	23	2.0	23	95	0	83	10	21	50	17	1.77
4688--4737	23	2.2	23	85	0	64	14	22	44	20	1.86
12393--12461	36	1.9	36	82	5	86	36	17	15	30	1.91
13201--13261	27	2.3	27	80	5	70	19	8	21	50	1.73
14126--14177	20	2.6	20	96	0	95	26	25	23	25	2.00
14799--14858	27	2.3	27	94	2	104	18	3	38	40	1.67
15210--15277	2	35.5	2	77	14	72	48	1	2	47	1.26
15211--15276	34	2.0	34	88	8	100	50	1	3	45	1.26
18132--18204	10	7.8	9	76	17	69	82	1	13	2	0.85
18127--18177	13	3.8	13	84	7	66	86	1	11	0	0.66
18140--18202	18	3.6	17	82	6	72	84	1	11	3	0.81
18143--18176	12	2.9	11	91	8	50	88	0	11	0	0.52
18127--18187	28	2.1	29	90	3	97	85	3	11	0	0.72
18260--18398	70	2.0	70	90	1	217	38	21	14	25	1.92
19321--19402	33	2.5	32	84	4	101	30	13	18	37	1.89
19321--19412	32	2.8	33	81	3	105	30	11	20	36	1.89
20623--20698	36	2.1	36	92	0	125	30	23	10	35	1.89
20716--20944	36	6.3	36	90	1	224	25	21	13	38	1.91
20711--20944	72	3.2	72	91	0	360	24	21	14	39	1.90
21060--21128	36	1.9	36	87	0	102	24	17	14	43	1.86
20765--21176	101	4.0	100	81	9	386	28	19	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21061--21142	36	2.3	36	78	14	89	24	18	14	42	1.87
21326--21412	35	2.5	35	96	0	156	39	19	9	32	1.83
22148--22255	37	2.9	37	91	2	173	41	15	11	31	1.82
22605--22638	2	17.0	2	100	0	68	50	0	0	50	1.00
22780--22836	30	1.9	30	85	7	80	26	10	3	59	1.46
22827--22869	23	2.0	21	81	9	50	16	4	9	69	1.31
22852--22887	8	4.4	8	86	6	54	11	2	2	83	0.86
22842--22888	21	2.2	21	81	7	51	14	2	6	76	1.08
24246--24337	2	45.5	2	97	2	175	50	1	0	48	1.08
24759--24835	24	3.2	24	92	3	120	37	19	23	19	1.94
26509--26560	21	2.3	21	83	9	59	71	7	5	15	1.29
26558--26599	18	2.5	17	82	14	52	64	4	4	26	1.33
26733--26836	2	52.0	2	100	0	208	50	0	0	50	1.00
27194--27305	37	3.0	37	90	0	179	33	15	12	39	1.85
27427--27462	2	18.0	2	100	0	72	50	0	0	50	1.00
31863--31895	2	17.0	2	93	6	59	48	0	0	51	1.00
31857--31909	14	4.1	13	80	9	54	52	0	0	47	1.00
34506--34534	15	1.9	15	100	0	58	48	0	10	41	1.37
34634--34682	19	2.3	22	76	20	59	40	2	2	55	1.23
34850--34892	20	2.0	21	86	13	61	55	2	0	41	1.12
34842--34969	65	2.0	63	86	8	179	53	1	7	36	1.39
35102--35155	27	2.0	27	100	0	108	25	14	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43417--43442	5	5.2	5	100	0	52	23	19	19	38	1.93
50617--50750	3	44.7	3	92	0	223	62	0	1	35	1.04
50998--51914	119	7.9	119	93	3	1514	28	21	13	36	1.91
50996--51914	351	2.6	351	94	2	1600	28	21	13	36	1.91
52543--52902	52	6.9	52	95	1	650	37	23	15	24	1.93
53870--53954	6	13.0	6	73	22	57	0	20	0	80	0.72
53877--53931	8	6.2	9	76	16	53	0	21	0	78	0.76
53870--53949	41	2.0	41	87	9	119	0	20	0	80	0.72
53870--53955	33	2.5	33	85	7	111	0	20	0	79	0.74
66612--66728	3	40.7	3	86	10	165	65	0	0	33	0.98

Tables:   1

The End!