Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008908.1 Hibiscus syriacus cultivar Beakdansim tig00112205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 345752
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--8877 Score: 16115
Period size: 7 Copynumber: 1284.1 Consensus size: 7
1 TAAACCC
1 TAAACCC
8 TAAACCC
1 TAAACCC
15 TAAACCC
1 TAAACCC
22 TAAACCC
1 TAAACCC
29 TAAACCC
1 TAAACCC
36 TAAACCC
1 TAAACCC
43 TAAACCC
1 TAAACCC
50 TAAACCC
1 TAAACCC
57 TAAACCC
1 TAAACCC
64 TAAACCC
1 TAAACCC
71 TAAACCC
1 TAAACCC
78 TAAACCC
1 TAAACCC
85 TAAACCC
1 TAAACCC
92 TAAA-CC
1 TAAACCC
98 TAAA-CC
1 TAAACCC
104 T-AACCC
1 TAAACCC
110 TAAACCC
1 TAAACCC
117 TAAACCC
1 TAAACCC
124 TAAACCC
1 TAAACCC
131 TAAACCC
1 TAAACCC
138 TAAACCC
1 TAAACCC
145 T-AACCC
1 TAAACCC
151 TAAACCC
1 TAAACCC
158 TAAACCC
1 TAAACCC
165 TAAACCC
1 TAAACCC
172 T-AACCC
1 TAAACCC
178 T-AACCC
1 TAAACCC
184 T-AACCC
1 TAAACCC
190 T-AACCC
1 TAAACCC
196 TAAACCC
1 TAAACCC
203 TAAACCC
1 TAAACCC
210 TAAACCC
1 TAAACCC
217 T-AACCC
1 TAAACCC
223 T-AA-CC
1 TAAACCC
228 TAAACCC
1 TAAACCC
235 TAAACCC
1 TAAACCC
242 TAAA-CC
1 TAAACCC
248 TAAA-CC
1 TAAACCC
254 TAAA-CC
1 TAAACCC
260 TAAACCC
1 TAAACCC
267 TAAACCC
1 TAAACCC
274 TAAACCC
1 TAAACCC
281 TAAACCC
1 TAAACCC
288 T-AACCC
1 TAAACCC
294 T-AACCC
1 TAAACCC
300 TAAACCC
1 TAAACCC
307 TAAACCC
1 TAAACCC
314 TAAACCC
1 TAAACCC
321 TAAACCC
1 TAAACCC
328 TAAAACCC
1 T-AAACCC
336 TAAACCC
1 TAAACCC
*
343 GAAACCC
1 TAAACCC
350 TAAACCC
1 TAAACCC
357 T-AACCC
1 TAAACCC
363 TAAACCC
1 TAAACCC
*
370 GAAACCC
1 TAAACCC
377 T-AACCC
1 TAAACCC
383 TAAACCC
1 TAAACCC
390 TAAACCC
1 TAAACCC
397 TAAACCC
1 TAAACCC
404 TAAACCC
1 TAAACCC
411 TAAACCC
1 TAAACCC
418 TAAACCC
1 TAAACCC
425 T-AACCC
1 TAAACCC
*
431 GAAACCC
1 TAAACCC
438 T-AACCC
1 TAAACCC
444 TAAACCC
1 TAAACCC
451 TAAACCC
1 TAAACCC
458 TAAACCC
1 TAAACCC
465 TAAACCC
1 TAAACCC
472 TAAACCC
1 TAAACCC
479 TAAACCC
1 TAAACCC
*
486 -AAAACC
1 TAAACCC
492 TAAACCC
1 TAAACCC
499 TAAACAACCC
1 T--A-AACCC
509 TAAACCC
1 TAAACCC
516 TAAACCC
1 TAAACCC
523 T-AACCC
1 TAAACCC
529 TAAACCC
1 TAAACCC
536 TAAACCC
1 TAAACCC
543 TAAAACCC
1 T-AAACCC
551 TAAACCC
1 TAAACCC
558 TAAACCC
1 TAAACCC
565 -AAACCC
1 TAAACCC
571 TAAACCC
1 TAAACCC
578 T-AACCC
1 TAAACCC
584 T-AACCC
1 TAAACCC
590 TAAACCC
1 TAAACCC
597 TAAACCC
1 TAAACCC
604 TAAACCC
1 TAAACCC
611 TAAA-CC
1 TAAACCC
617 TAAACCCC
1 TAAA-CCC
625 TAAACCC
1 TAAACCC
632 TAAACCC
1 TAAACCC
639 TAAACCC
1 TAAACCC
646 TAAACCC
1 TAAACCC
653 TAAACCC
1 TAAACCC
660 TAAACCC
1 TAAACCC
667 TAAACCC
1 TAAACCC
674 TAAACCC
1 TAAACCC
681 TAAACCC
1 TAAACCC
688 TAAACCC
1 TAAACCC
695 TAAACCC
1 TAAACCC
702 T-AACCC
1 TAAACCC
708 T-AA-CC
1 TAAACCC
713 TAAACCC
1 TAAACCC
720 TAAACCC
1 TAAACCC
727 TAAACCC
1 TAAACCC
734 TAAACCC
1 TAAACCC
741 TAAACCC
1 TAAACCC
748 TAAACCC
1 TAAACCC
755 TAAACCC
1 TAAACCC
762 TAAACCC
1 TAAACCC
769 TAAACCC
1 TAAACCC
776 TAAACCC
1 TAAACCC
783 TAAACCC
1 TAAACCC
790 TAAACCC
1 TAAACCC
797 TAAACCC
1 TAAACCC
804 -AAACCC
1 TAAACCC
810 TAAACCC
1 TAAACCC
817 TAAAACCC
1 T-AAACCC
825 TAAAACCC
1 T-AAACCC
833 TAAA-CC
1 TAAACCC
839 T-AACCC
1 TAAACCC
845 TAAAACCC
1 T-AAACCC
853 TAAACCC
1 TAAACCC
860 TAAACCC
1 TAAACCC
867 TAAACCC
1 TAAACCC
874 TAAAACCC
1 T-AAACCC
882 TAAA-CC
1 TAAACCC
888 TAAACCC
1 TAAACCC
895 TAAACCC
1 TAAACCC
902 TAAACCC
1 TAAACCC
909 TAAACCC
1 TAAACCC
916 TAAACCC
1 TAAACCC
923 TAAACCC
1 TAAACCC
930 TAAACCC
1 TAAACCC
937 TAAACCC
1 TAAACCC
944 TAAACCC
1 TAAACCC
951 TAAACCC
1 TAAACCC
958 TAAACCC
1 TAAACCC
965 TAAACCC
1 TAAACCC
972 TAAA-CC
1 TAAACCC
978 TAAACCC
1 TAAACCC
985 TAAACCC
1 TAAACCC
992 TAAACCC
1 TAAACCC
999 TAAACCC
1 TAAACCC
1006 TAAACCC
1 TAAACCC
1013 TAAACCC
1 TAAACCC
1020 TAAACCC
1 TAAACCC
1027 TAAACCC
1 TAAACCC
1034 TAAACCC
1 TAAACCC
1041 TAAACCC
1 TAAACCC
1048 T-AACCC
1 TAAACCC
1054 TAAACCC
1 TAAACCC
1061 TAAACCC
1 TAAACCC
1068 TAAACCC
1 TAAACCC
1075 T-AACCC
1 TAAACCC
1081 TAAA--C
1 TAAACCC
1086 TAAACCC
1 TAAACCC
1093 TAAACCC
1 TAAACCC
1100 TAAACCC
1 TAAACCC
1107 TAAACCC
1 TAAACCC
1114 TAAACCC
1 TAAACCC
1121 TAAACCC
1 TAAACCC
1128 TAAACCC
1 TAAACCC
1135 TAAACCC
1 TAAACCC
1142 T-AACCC
1 TAAACCC
1148 T-AACCC
1 TAAACCC
1154 TAAACCC
1 TAAACCC
1161 TAAA-CC
1 TAAACCC
1167 TAAACCC
1 TAAACCC
1174 TAAACCC
1 TAAACCC
1181 T-AACCC
1 TAAACCC
1187 TAAACCC
1 TAAACCC
1194 T-AACCC
1 TAAACCC
1200 TAAA-CC
1 TAAACCC
1206 TAAACCC
1 TAAACCC
1213 TAAA-CC
1 TAAACCC
1219 TAAA-CC
1 TAAACCC
1225 TAAACCC
1 TAAACCC
1232 T-AACCC
1 TAAACCC
1238 TAAACCC
1 TAAACCC
1245 TAAACCC
1 TAAACCC
1252 TAAACCC
1 TAAACCC
1259 T-AA-CC
1 TAAACCC
1264 TAAA---
1 TAAACCC
1268 TAAACCC
1 TAAACCC
1275 TAAACCC
1 TAAACCC
1282 TAAACCC
1 TAAACCC
1289 TAAA-CC
1 TAAACCC
1295 TAAAACCC
1 T-AAACCC
1303 TAAACCC
1 TAAACCC
1310 TAAACCC
1 TAAACCC
1317 TAAACCC
1 TAAACCC
1324 --AACCC
1 TAAACCC
1329 TAAACCC
1 TAAACCC
1336 T-AACCC
1 TAAACCC
1342 TAAACCC
1 TAAACCC
1349 TAAACCC
1 TAAACCC
1356 T-AACCC
1 TAAACCC
1362 TAAACCC
1 TAAACCC
1369 TAAA-CC
1 TAAACCC
*
1375 TAACCCCCC
1 TAA--ACCC
1384 TAAA-CC
1 TAAACCC
1390 TAAACCC
1 TAAACCC
1397 T-AACCC
1 TAAACCC
1403 TAAACCC
1 TAAACCC
1410 TAAACCC
1 TAAACCC
1417 TAAACCC
1 TAAACCC
*
1424 TAAAACC
1 TAAACCC
1431 TAAACCC
1 TAAACCC
1438 TAAACCC
1 TAAACCC
1445 TAAACCC
1 TAAACCC
1452 T-AACCC
1 TAAACCC
1458 TAAACCC
1 TAAACCC
1465 TAAACCC
1 TAAACCC
1472 TAAACCC
1 TAAACCC
1479 TAAACCC
1 TAAACCC
1486 TAAACCC
1 TAAACCC
1493 TAAACCC
1 TAAACCC
1500 TAAACCC
1 TAAACCC
1507 TAAACCC
1 TAAACCC
1514 TAAACCC
1 TAAACCC
1521 TAAACCC
1 TAAACCC
1528 TAAACCC
1 TAAACCC
*
1535 TAAAACC
1 TAAACCC
1542 TAAACCC
1 TAAACCC
1549 TAAACCC
1 TAAACCC
1556 TAAACCC
1 TAAACCC
1563 TAAA-CC
1 TAAACCC
1569 TAAACCC
1 TAAACCC
1576 TAAACCC
1 TAAACCC
1583 TAAACCC
1 TAAACCC
1590 TAAACCC
1 TAAACCC
1597 TAAACCC
1 TAAACCC
1604 TAAACCCC
1 TAAA-CCC
1612 TAAACCC
1 TAAACCC
1619 TAAACCC
1 TAAACCC
1626 TAAACCC
1 TAAACCC
1633 TAAA-CC
1 TAAACCC
1639 TAAACCC
1 TAAACCC
1646 T-AACCC
1 TAAACCC
1652 TAAACCC
1 TAAACCC
1659 TAAA-CC
1 TAAACCC
1665 T-AA-CC
1 TAAACCC
1670 TAAA-CC
1 TAAACCC
1676 TAAACCC
1 TAAACCC
1683 TAAACCC
1 TAAACCC
1690 --AACCC
1 TAAACCC
1695 TAAACCC
1 TAAACCC
1702 TAAA-CC
1 TAAACCC
1708 TAAACCC
1 TAAACCC
1715 TAAACCC
1 TAAACCC
1722 TAAACCC
1 TAAACCC
1729 TAAACCC
1 TAAACCC
1736 TAAACCC
1 TAAACCC
1743 TAAA-CC
1 TAAACCC
1749 TAAACCC
1 TAAACCC
1756 T-AACCC
1 TAAACCC
1762 TAAAACCC
1 T-AAACCC
1770 TAAACCC
1 TAAACCC
*
1777 GAAACCC
1 TAAACCC
1784 TAAACCC
1 TAAACCC
1791 TAAACCC
1 TAAACCC
1798 TAAACCC
1 TAAACCC
1805 TAAA-CC
1 TAAACCC
1811 TAAACCC
1 TAAACCC
1818 TAAACCC
1 TAAACCC
1825 -AAACCC
1 TAAACCC
1831 TAAACCC
1 TAAACCC
1838 TAAACCC
1 TAAACCC
1845 TAAACCC
1 TAAACCC
1852 TAAACCC
1 TAAACCC
1859 TAAACCC
1 TAAACCC
1866 TAAACCC
1 TAAACCC
1873 TAAACCC
1 TAAACCC
1880 TAAA-CC
1 TAAACCC
1886 TAAACCC
1 TAAACCC
1893 TAAACCC
1 TAAACCC
1900 TAAACCC
1 TAAACCC
1907 TAAACCC
1 TAAACCC
1914 TAAACCC
1 TAAACCC
1921 TAAACCC
1 TAAACCC
1928 TAAACCC
1 TAAACCC
1935 TAAACCC
1 TAAACCC
1942 TAAACCC
1 TAAACCC
1949 TAAACCC
1 TAAACCC
1956 TAAACCC
1 TAAACCC
1963 TAAACCC
1 TAAACCC
1970 TAAACCC
1 TAAACCC
1977 TAAACCC
1 TAAACCC
1984 TAAACCC
1 TAAACCC
1991 TAAACCC
1 TAAACCC
1998 TAAACCC
1 TAAACCC
2005 TAAACCC
1 TAAACCC
2012 TAAACCC
1 TAAACCC
2019 TAAACCC
1 TAAACCC
2026 TAAA-CC
1 TAAACCC
2032 TAAACCC
1 TAAACCC
2039 TAAACCC
1 TAAACCC
2046 TAAACCC
1 TAAACCC
2053 TAAACCC
1 TAAACCC
2060 TAAACCC
1 TAAACCC
2067 TAAACCC
1 TAAACCC
2074 TAAACCC
1 TAAACCC
2081 TAAACCC
1 TAAACCC
2088 TAAACCC
1 TAAACCC
2095 TAAACCC
1 TAAACCC
2102 TAAACCC
1 TAAACCC
2109 TAAACCC
1 TAAACCC
2116 TAAACCC
1 TAAACCC
2123 TAAACCC
1 TAAACCC
2130 TAAACCC
1 TAAACCC
2137 TAAACCC
1 TAAACCC
2144 TAAACCC
1 TAAACCC
2151 TAAACCC
1 TAAACCC
2158 TAAACCC
1 TAAACCC
2165 TAAACCC
1 TAAACCC
2172 TAAACCC
1 TAAACCC
2179 TAAACCC
1 TAAACCC
2186 TAAACCC
1 TAAACCC
2193 TAAACCC
1 TAAACCC
2200 TAAACCC
1 TAAACCC
2207 TAAACCC
1 TAAACCC
2214 TAAA-CC
1 TAAACCC
2220 TAAACCC
1 TAAACCC
2227 TAAACCC
1 TAAACCC
2234 TAAACCC
1 TAAACCC
2241 TAAACCC
1 TAAACCC
2248 T--ACCC
1 TAAACCC
2253 TAAACCC
1 TAAACCC
2260 TAAACCC
1 TAAACCC
2267 TAAACCC
1 TAAACCC
2274 TAAACCC
1 TAAACCC
2281 TAAACCC
1 TAAACCC
2288 TAAACCC
1 TAAACCC
2295 TAAACCC
1 TAAACCC
2302 TAAACCC
1 TAAACCC
2309 TAAACCC
1 TAAACCC
2316 TAAACCC
1 TAAACCC
2323 TAAACCC
1 TAAACCC
2330 TAAACCC
1 TAAACCC
2337 TAAACCC
1 TAAACCC
2344 TAAACCC
1 TAAACCC
2351 TAAACCC
1 TAAACCC
2358 TAAACCC
1 TAAACCC
2365 TAAACCC
1 TAAACCC
2372 TAAACCC
1 TAAACCC
2379 TAAACCC
1 TAAACCC
2386 T-AACCC
1 TAAACCC
2392 TAAACCC
1 TAAACCC
2399 TAAACCC
1 TAAACCC
2406 TAAACCC
1 TAAACCC
2413 T-AACCC
1 TAAACCC
2419 TAAACCC
1 TAAACCC
2426 TAAACCC
1 TAAACCC
2433 TAAACCC
1 TAAACCC
2440 T-AACCC
1 TAAACCC
2446 TAAACCC
1 TAAACCC
2453 TAAACCC
1 TAAACCC
2460 T---CCC
1 TAAACCC
2464 TAAACCC
1 TAAACCC
2471 TAAACCC
1 TAAACCC
2478 TAAACCC
1 TAAACCC
2485 TAAACCC
1 TAAACCC
2492 TAAACCC
1 TAAACCC
2499 TAAACCC
1 TAAACCC
2506 TAAACCC
1 TAAACCC
2513 TAAACCC
1 TAAACCC
2520 TAAACCC
1 TAAACCC
2527 TAAACCC
1 TAAACCC
2534 TAAACCC
1 TAAACCC
2541 TAAACCC
1 TAAACCC
2548 TAAACCC
1 TAAACCC
2555 TAAACCC
1 TAAACCC
2562 TAAACCC
1 TAAACCC
2569 TAAACCC
1 TAAACCC
2576 TAAA-CC
1 TAAACCC
2582 TAAACCC
1 TAAACCC
2589 TAAACCC
1 TAAACCC
2596 TAAACCC
1 TAAACCC
2603 T-AACCC
1 TAAACCC
2609 -AAACCC
1 TAAACCC
2615 TAAACCC
1 TAAACCC
2622 TAAACCC
1 TAAACCC
2629 TAAACCC
1 TAAACCC
2636 TAAACCC
1 TAAACCC
2643 TAAACCC
1 TAAACCC
2650 TAAACCC
1 TAAACCC
2657 TAAACCC
1 TAAACCC
2664 T-AACCC
1 TAAACCC
2670 TAAA-CC
1 TAAACCC
2676 TAAACCC
1 TAAACCC
2683 TAAACCC
1 TAAACCC
2690 TAAACCC
1 TAAACCC
2697 TAAACCC
1 TAAACCC
2704 TAAACCC
1 TAAACCC
2711 TAAACCC
1 TAAACCC
2718 TAAACCC
1 TAAACCC
2725 TAAACCC
1 TAAACCC
2732 TAAACCC
1 TAAACCC
2739 TAAACCC
1 TAAACCC
2746 TAAACCC
1 TAAACCC
2753 TAAACCC
1 TAAACCC
2760 TAAACCC
1 TAAACCC
2767 TAAACCC
1 TAAACCC
2774 TAAACCC
1 TAAACCC
2781 TAAA-CC
1 TAAACCC
2787 TAAACCC
1 TAAACCC
2794 TAAACCC
1 TAAACCC
2801 TAAACCC
1 TAAACCC
2808 TAAACCC
1 TAAACCC
2815 TAAACCC
1 TAAACCC
2822 TAAACCC
1 TAAACCC
2829 TAAACCC
1 TAAACCC
2836 TAAACCC
1 TAAACCC
2843 TAAACCC
1 TAAACCC
2850 TAAACCC
1 TAAACCC
2857 TAAACCC
1 TAAACCC
2864 TAAACCC
1 TAAACCC
2871 TAAACCC
1 TAAACCC
2878 TAAACCC
1 TAAACCC
2885 TAAACCC
1 TAAACCC
2892 TAACTAACCC
1 T-A--AACCC
2902 TAAACCC
1 TAAACCC
2909 TAAACCC
1 TAAACCC
2916 TAAACCC
1 TAAACCC
2923 TAAACCC
1 TAAACCC
2930 TAAACCC
1 TAAACCC
2937 TAAACCC
1 TAAACCC
2944 TAAACCC
1 TAAACCC
2951 TAAACCC
1 TAAACCC
2958 TAAACCC
1 TAAACCC
2965 TAAACCC
1 TAAACCC
2972 TAAACCC
1 TAAACCC
2979 TAAACCC
1 TAAACCC
2986 TAAA-CC
1 TAAACCC
2992 TAAACCC
1 TAAACCC
2999 TAAACCC
1 TAAACCC
3006 TAAACCC
1 TAAACCC
3013 TAAACCC
1 TAAACCC
3020 TAAACCC
1 TAAACCC
3027 TAAACCC
1 TAAACCC
3034 TAAACCC
1 TAAACCC
3041 TAAACCC
1 TAAACCC
3048 T-AACCC
1 TAAACCC
3054 TAAACCC
1 TAAACCC
3061 TAAACCC
1 TAAACCC
3068 TAAACCC
1 TAAACCC
3075 TAAACCC
1 TAAACCC
3082 TAAACCC
1 TAAACCC
3089 TAAACCC
1 TAAACCC
3096 TAAACCC
1 TAAACCC
3103 TAAACCC
1 TAAACCC
3110 TAAACCC
1 TAAACCC
3117 T-AACCC
1 TAAACCC
3123 TAAA-CC
1 TAAACCC
3129 TAAACCC
1 TAAACCC
3136 TAAACCC
1 TAAACCC
3143 TAAACCC
1 TAAACCC
3150 TAAACCC
1 TAAACCC
3157 T-AACCC
1 TAAACCC
3163 TAAACCC
1 TAAACCC
3170 TAAACCC
1 TAAACCC
3177 TAAACCC
1 TAAACCC
3184 TAAACCC
1 TAAACCC
3191 T-AACCC
1 TAAACCC
3197 TAAACCC
1 TAAACCC
3204 TAAACCC
1 TAAACCC
3211 TAAACCC
1 TAAACCC
3218 TAAACCC
1 TAAACCC
3225 TAAACCC
1 TAAACCC
3232 TAAACCC
1 TAAACCC
3239 TAAACCC
1 TAAACCC
3246 T-AACCC
1 TAAACCC
3252 TAAACCC
1 TAAACCC
3259 TAAACCC
1 TAAACCC
3266 TAAACCC
1 TAAACCC
3273 TAAACCC
1 TAAACCC
3280 TAAACCC
1 TAAACCC
3287 TAAACCC
1 TAAACCC
3294 TAAACCC
1 TAAACCC
3301 TAAACCC
1 TAAACCC
3308 TAAACCC
1 TAAACCC
3315 TAAACCC
1 TAAACCC
3322 TAAACCC
1 TAAACCC
3329 TAAACCC
1 TAAACCC
3336 TAAACCC
1 TAAACCC
3343 TAAACCC
1 TAAACCC
3350 TAAACCC
1 TAAACCC
3357 TAAACCC
1 TAAACCC
3364 TAAACCC
1 TAAACCC
3371 TAAACCC
1 TAAACCC
3378 TAAACCC
1 TAAACCC
3385 TAAACCC
1 TAAACCC
3392 TAAACCC
1 TAAACCC
3399 TAAACCC
1 TAAACCC
3406 TAAACCC
1 TAAACCC
3413 TAAACCC
1 TAAACCC
3420 TAAACCC
1 TAAACCC
3427 TAAACCC
1 TAAACCC
3434 TAAACCC
1 TAAACCC
3441 TAAACCC
1 TAAACCC
3448 TAAACCC
1 TAAACCC
3455 TAAACCC
1 TAAACCC
3462 TAAACCC
1 TAAACCC
3469 TAAACCC
1 TAAACCC
3476 TAAACCC
1 TAAACCC
3483 TAAACCC
1 TAAACCC
3490 TAAACCC
1 TAAACCC
3497 TAAACCC
1 TAAACCC
3504 TAAACCC
1 TAAACCC
3511 TAAACCC
1 TAAACCC
3518 TAAACCC
1 TAAACCC
3525 TAAACCC
1 TAAACCC
3532 TAAACCC
1 TAAACCC
3539 TAAA-CC
1 TAAACCC
3545 TAAACCC
1 TAAACCC
3552 TAAACCC
1 TAAACCC
3559 TAAACCC
1 TAAACCC
3566 TAAACCC
1 TAAACCC
3573 TAAACCC
1 TAAACCC
3580 TAAACCC
1 TAAACCC
3587 TAAACCC
1 TAAACCC
3594 T-AACCC
1 TAAACCC
3600 TAAACCC
1 TAAACCC
3607 TAAACCC
1 TAAACCC
3614 TAAACCC
1 TAAACCC
3621 TAAACCC
1 TAAACCC
3628 TAAACCC
1 TAAACCC
3635 TAAACCC
1 TAAACCC
3642 TAAACCC
1 TAAACCC
3649 TAAACCC
1 TAAACCC
3656 TAAACCC
1 TAAACCC
3663 TAAACCC
1 TAAACCC
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1 TAAACCC
7448 TAAACCC
1 TAAACCC
7455 TAAACCC
1 TAAACCC
7462 TAAACCC
1 TAAACCC
7469 TAAACCC
1 TAAACCC
7476 TAAACCC
1 TAAACCC
7483 TAAACCC
1 TAAACCC
7490 TAAACCC
1 TAAACCC
7497 TAAACCC
1 TAAACCC
7504 TAAACCC
1 TAAACCC
7511 TAAACCC
1 TAAACCC
7518 TAAACCC
1 TAAACCC
7525 TAAACCC
1 TAAACCC
7532 TAAACCC
1 TAAACCC
7539 TAAACCC
1 TAAACCC
7546 TAAACCC
1 TAAACCC
7553 TAAACCC
1 TAAACCC
7560 TAAACCC
1 TAAACCC
7567 TAAACCC
1 TAAACCC
7574 TAAACCC
1 TAAACCC
7581 TAAACCC
1 TAAACCC
7588 TAAACCC
1 TAAACCC
7595 TAAACCC
1 TAAACCC
7602 TAAACCC
1 TAAACCC
7609 TAAACCC
1 TAAACCC
7616 TAAACCC
1 TAAACCC
7623 TAAACCC
1 TAAACCC
7630 T-AACCC
1 TAAACCC
7636 TAAACCC
1 TAAACCC
7643 TAAACCC
1 TAAACCC
7650 TAAACCC
1 TAAACCC
7657 TAAACCC
1 TAAACCC
7664 TAAACCC
1 TAAACCC
7671 TAAACCC
1 TAAACCC
7678 TAAACCC
1 TAAACCC
7685 TAAACCC
1 TAAACCC
7692 TAAACCC
1 TAAACCC
7699 TAAACCC
1 TAAACCC
7706 TAAACCC
1 TAAACCC
7713 TAAACCC
1 TAAACCC
7720 TAAACCC
1 TAAACCC
7727 TAAACCC
1 TAAACCC
7734 TAAACCC
1 TAAACCC
7741 TAAACCC
1 TAAACCC
7748 TAAACCC
1 TAAACCC
7755 TAAACCC
1 TAAACCC
7762 TAAACCC
1 TAAACCC
7769 TAAACCC
1 TAAACCC
7776 TAAACCC
1 TAAACCC
7783 TAAACCC
1 TAAACCC
7790 TAAACCC
1 TAAACCC
7797 T-AACCC
1 TAAACCC
7803 TAAACCC
1 TAAACCC
7810 TAAACCC
1 TAAACCC
7817 TAAACCC
1 TAAACCC
7824 TAAACCC
1 TAAACCC
7831 TAAACCC
1 TAAACCC
7838 TAAACCC
1 TAAACCC
7845 TAAA-CC
1 TAAACCC
7851 TAAACCC
1 TAAACCC
7858 TAAACCC
1 TAAACCC
7865 TAAACCC
1 TAAACCC
7872 TAAACCC
1 TAAACCC
7879 TAAACCC
1 TAAACCC
7886 TAAACCC
1 TAAACCC
7893 TAAACCC
1 TAAACCC
7900 TAAACCC
1 TAAACCC
7907 TAAACCC
1 TAAACCC
7914 TAAACCC
1 TAAACCC
7921 TAAACCC
1 TAAACCC
7928 TAAA-CC
1 TAAACCC
7934 TAAACCC
1 TAAACCC
7941 TAAACCC
1 TAAACCC
7948 TAAACCC
1 TAAACCC
7955 TAAACCC
1 TAAACCC
7962 TAAACCC
1 TAAACCC
7969 TAAACCC
1 TAAACCC
7976 TAAACCC
1 TAAACCC
7983 TAAACCC
1 TAAACCC
7990 TAAACCC
1 TAAACCC
7997 TAAACCC
1 TAAACCC
8004 TAAACCC
1 TAAACCC
8011 TAAACCC
1 TAAACCC
8018 TAAACCC
1 TAAACCC
8025 TAAACCC
1 TAAACCC
8032 TAAACCC
1 TAAACCC
8039 TAAACCC
1 TAAACCC
8046 TAAACCC
1 TAAACCC
8053 TAAACCC
1 TAAACCC
8060 TAAACCC
1 TAAACCC
8067 TAAACCC
1 TAAACCC
8074 TAAACCC
1 TAAACCC
8081 TAAACCC
1 TAAACCC
8088 TAAACCC
1 TAAACCC
8095 TAAACCC
1 TAAACCC
8102 TAAACCC
1 TAAACCC
8109 TAAACCC
1 TAAACCC
8116 TAAA-CC
1 TAAACCC
8122 TAAACCC
1 TAAACCC
8129 TAAACCC
1 TAAACCC
8136 TAAACCC
1 TAAACCC
8143 TAAACCC
1 TAAACCC
8150 TAAACCC
1 TAAACCC
8157 TAAACCC
1 TAAACCC
8164 TAAACCC
1 TAAACCC
8171 TAAACCC
1 TAAACCC
8178 TAAACCC
1 TAAACCC
8185 TAAACCC
1 TAAACCC
8192 TAAACCC
1 TAAACCC
8199 TAAACCC
1 TAAACCC
8206 TAAACCC
1 TAAACCC
8213 TAAACCC
1 TAAACCC
8220 TAAACCC
1 TAAACCC
8227 TAAACCC
1 TAAACCC
8234 TAAACCC
1 TAAACCC
8241 TAAACCC
1 TAAACCC
8248 TAAACCC
1 TAAACCC
8255 TAAA-CC
1 TAAACCC
8261 TAAACCC
1 TAAACCC
8268 TAAACCC
1 TAAACCC
8275 TAAACCC
1 TAAACCC
8282 TAAACCC
1 TAAACCC
8289 TAAACCC
1 TAAACCC
8296 TAAACCC
1 TAAACCC
8303 TAAACCC
1 TAAACCC
8310 TAAACCC
1 TAAACCC
8317 TAAACCC
1 TAAACCC
8324 TAAACCC
1 TAAACCC
8331 TAAACCC
1 TAAACCC
8338 TAAACCC
1 TAAACCC
8345 TAAACCC
1 TAAACCC
8352 TAAACCC
1 TAAACCC
8359 TAAACCC
1 TAAACCC
8366 TAAACCC
1 TAAACCC
8373 TAAACCC
1 TAAACCC
8380 TAAACCC
1 TAAACCC
8387 TAAACCC
1 TAAACCC
8394 TAAACCC
1 TAAACCC
8401 TAAACCC
1 TAAACCC
8408 TAAACCC
1 TAAACCC
8415 TAAACCC
1 TAAACCC
8422 TAAACCC
1 TAAACCC
8429 TAAACCC
1 TAAACCC
8436 TAAACCC
1 TAAACCC
8443 TAAACCC
1 TAAACCC
*
8450 TAAGCCC
1 TAAACCC
*
8457 TAAGCCC
1 TAAACCC
*
8464 TAAGCCC
1 TAAACCC
*
8471 TAAGCCC
1 TAAACCC
*
8478 TAAGCCC
1 TAAACCC
*
8485 TAAGCCC
1 TAAACCC
*
8492 TAAGCCC
1 TAAACCC
*
8499 TAAGCCC
1 TAAACCC
*
8506 TAAGCCC
1 TAAACCC
*
8513 TAAGCCC
1 TAAACCC
*
8520 TAAGCCC
1 TAAACCC
*
8527 TAAGCCC
1 TAAACCC
*
8534 TAAGCCC
1 TAAACCC
*
8541 TAAGCCC
1 TAAACCC
*
8548 TAAGCCC
1 TAAACCC
*
8555 TAAGCCC
1 TAAACCC
*
8562 TAAGCCC
1 TAAACCC
*
8569 TAAGCCC
1 TAAACCC
*
8576 TAAGCCC
1 TAAACCC
*
8583 TAAGCCC
1 TAAACCC
*
8590 TAAGCCC
1 TAAACCC
*
8597 TAAGCCC
1 TAAACCC
*
8604 TAAGCCC
1 TAAACCC
*
8611 TAAGCCC
1 TAAACCC
*
8618 TAGACCC
1 TAAACCC
*
8625 TAAGCCC
1 TAAACCC
*
8632 TAAGCCC
1 TAAACCC
*
8639 TAAGCCC
1 TAAACCC
*
8646 TAAGCCC
1 TAAACCC
*
8653 TAAGCCC
1 TAAACCC
*
8660 TAAGCCC
1 TAAACCC
*
8667 TAAGCCC
1 TAAACCC
*
8674 TAAGCCC
1 TAAACCC
*
8681 TAAGCCC
1 TAAACCC
*
8688 TAAGCCC
1 TAAACCC
*
8695 TAAGCCC
1 TAAACCC
*
8702 TAAGCCC
1 TAAACCC
*
8709 TAAGCCC
1 TAAACCC
*
8716 TAAGCCC
1 TAAACCC
*
8723 TAAGCCC
1 TAAACCC
*
8730 TAAGCCC
1 TAAACCC
*
8737 TAAGCCC
1 TAAACCC
*
8744 TAAGCCC
1 TAAACCC
*
8751 TAAGCCC
1 TAAACCC
*
8758 TAAGCCC
1 TAAACCC
*
8765 TAAGCCC
1 TAAACCC
*
8772 TAAGCCC
1 TAAACCC
*
8779 TAAGCCC
1 TAAACCC
*
8786 TAAGCCC
1 TAAACCC
*
8793 TAAGCCC
1 TAAACCC
*
8800 TAAGCCC
1 TAAACCC
*
8807 TAAGCCC
1 TAAACCC
*
8814 TAAGCCC
1 TAAACCC
*
8821 TAAGCCC
1 TAAACCC
*
8828 TAAGCCC
1 TAAACCC
8835 TAAACCC
1 TAAACCC
8842 TAAACCC
1 TAAACCC
8849 TAAACCC
1 TAAACCC
8856 TAAACCC
1 TAAACCC
8863 TAAACCC
1 TAAACCC
8870 TAAACCC
1 TAAACCC
8877 T
1 T
8878 GGACCCTGGA
Statistics
Matches: 8717, Mismatches: 22, Indels: 262
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.00
5 43 0.00
6 626 0.07
7 7955 0.91
8 66 0.01
9 7 0.00
10 12 0.00
ACGTcount: A:0.42, C:0.43, G:0.01, T:0.14
Consensus pattern (7 bp):
TAAACCC
Found at i:8883 original size:7 final size:7
Alignment explanation
Indices: 8873--8926 Score: 108
Period size: 7 Copynumber: 7.7 Consensus size: 7
8863 TAAACCCTAA
8873 ACCCTGG
1 ACCCTGG
8880 ACCCTGG
1 ACCCTGG
8887 ACCCTGG
1 ACCCTGG
8894 ACCCTGG
1 ACCCTGG
8901 ACCCTGG
1 ACCCTGG
8908 ACCCTGG
1 ACCCTGG
8915 ACCCTGG
1 ACCCTGG
8922 ACCCT
1 ACCCT
8927 AAGCCCTACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (7 bp):
ACCCTGG
Found at i:8883 original size:14 final size:14
Alignment explanation
Indices: 8838--8933 Score: 93
Period size: 14 Copynumber: 6.9 Consensus size: 14
8828 TAAGCCCTAA
**
8838 ACCCTAAACCCTAA
1 ACCCTAAACCCTGG
**
8852 ACCCTAAACCCTAA
1 ACCCTAAACCCTGG
8866 ACCCTAAACCCTGG
1 ACCCTAAACCCTGG
**
8880 ACCCTGGACCCTGG
1 ACCCTAAACCCTGG
**
8894 ACCCTGGACCCTGG
1 ACCCTAAACCCTGG
**
8908 ACCCTGGACCCTGG
1 ACCCTAAACCCTGG
*
8922 ACCCTAAGCCCT
1 ACCCTAAACCCT
8934 ACTATATGGT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 75 1.00
ACGTcount: A:0.26, C:0.44, G:0.16, T:0.15
Consensus pattern (14 bp):
ACCCTAAACCCTGG
Found at i:8890 original size:21 final size:21
Alignment explanation
Indices: 8845--8926 Score: 92
Period size: 21 Copynumber: 3.9 Consensus size: 21
8835 TAAACCCTAA
** **
8845 ACCCTAAACCCTAAACCCTAA
1 ACCCTAAACCCTGGACCCTGG
8866 ACCCTAAACCCTGGACCCTGG
1 ACCCTAAACCCTGGACCCTGG
**
8887 ACCCTGGACCCTGGACCCTGG
1 ACCCTAAACCCTGGACCCTGG
**
8908 ACCCTGGACCCTGGACCCT
1 ACCCTAAACCCTGGACCCT
8927 AAGCCCTACT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.24, C:0.44, G:0.17, T:0.15
Consensus pattern (21 bp):
ACCCTAAACCCTGGACCCTGG
Found at i:11350 original size:14 final size:14
Alignment explanation
Indices: 11319--11367 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
11309 CAAATCTTAA
* **
11319 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
11333 ACCCTGAACCCTGG
1 ACCCTGAACCCTGG
*
11347 ACCCTGGA-CCTGG
1 ACCCTGAACCCTGG
11360 ACCCTGAA
1 ACCCTGAA
11368 GAGGAGGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 12 0.40
14 18 0.60
ACGTcount: A:0.29, C:0.41, G:0.16, T:0.14
Consensus pattern (14 bp):
ACCCTGAACCCTGG
Found at i:12598 original size:7 final size:7
Alignment explanation
Indices: 12586--12988 Score: 706
Period size: 7 Copynumber: 57.7 Consensus size: 7
12576 CCGATTAACG
12586 GCCCTAA
1 GCCCTAA
12593 GCCCTAA
1 GCCCTAA
12600 GCCCTAA
1 GCCCTAA
12607 GCCCTAA
1 GCCCTAA
12614 GCCCTAA
1 GCCCTAA
12621 GCCCTAA
1 GCCCTAA
12628 GCCCTAA
1 GCCCTAA
12635 GCCCTAA
1 GCCCTAA
12642 GCCCTAA
1 GCCCTAA
12649 GCCCTAA
1 GCCCTAA
12656 GCCCTAA
1 GCCCTAA
12663 GCCCTAA
1 GCCCTAA
12670 GCCCTAA
1 GCCCTAA
12677 GCCCTAA
1 GCCCTAA
12684 GCCCTAA
1 GCCCTAA
12691 GCCCTAA
1 GCCCTAA
12698 GCCCTAA
1 GCCCTAA
12705 GCCCTAA
1 GCCCTAA
12712 GCCCT-A
1 GCCCTAA
12718 GACCCTAA
1 G-CCCTAA
12726 GCCCT-A
1 GCCCTAA
12732 GACCCT-A
1 G-CCCTAA
12739 GACCCTAA
1 G-CCCTAA
12747 GCCCTAA
1 GCCCTAA
12754 GCCCTAA
1 GCCCTAA
12761 GCCCTAA
1 GCCCTAA
12768 GCCCTAA
1 GCCCTAA
12775 GCCCTAA
1 GCCCTAA
12782 GCCCTAA
1 GCCCTAA
12789 GCCCTAA
1 GCCCTAA
12796 GCCCTAA
1 GCCCTAA
12803 GCCCTAA
1 GCCCTAA
12810 GCCCTAA
1 GCCCTAA
12817 GCCCTAA
1 GCCCTAA
12824 GCCCTAA
1 GCCCTAA
12831 GCCCTAA
1 GCCCTAA
12838 GCCCTAA
1 GCCCTAA
12845 G-CCTAA
1 GCCCTAA
12851 GCCCTAA
1 GCCCTAA
12858 GCCCTAA
1 GCCCTAA
12865 GCCCTAA
1 GCCCTAA
12872 GCCCTAA
1 GCCCTAA
12879 GCCCTAA
1 GCCCTAA
12886 GCCCTAA
1 GCCCTAA
12893 GCCCTAA
1 GCCCTAA
12900 GCCCTAA
1 GCCCTAA
12907 GCCCTAA
1 GCCCTAA
12914 GCCCTAA
1 GCCCTAA
12921 GCCCTAA
1 GCCCTAA
12928 GCCCTAA
1 GCCCTAA
12935 GCCCTAA
1 GCCCTAA
12942 GCCCTAA
1 GCCCTAA
12949 GCCCTAA
1 GCCCTAA
*
12956 ACCCTAA
1 GCCCTAA
*
12963 ACCCTAA
1 GCCCTAA
*
12970 ACCCTAA
1 GCCCTAA
*
12977 ACCCTAA
1 GCCCTAA
*
12984 ACCCT
1 GCCCT
12989 GGACCCTGGA
Statistics
Matches: 390, Mismatches: 1, Indels: 10
0.97 0.00 0.02
Matches are distributed among these distances:
6 10 0.03
7 376 0.96
8 4 0.01
ACGTcount: A:0.30, C:0.43, G:0.13, T:0.14
Consensus pattern (7 bp):
GCCCTAA
Found at i:12994 original size:7 final size:7
Alignment explanation
Indices: 12984--13037 Score: 108
Period size: 7 Copynumber: 7.7 Consensus size: 7
12974 TAAACCCTAA
12984 ACCCTGG
1 ACCCTGG
12991 ACCCTGG
1 ACCCTGG
12998 ACCCTGG
1 ACCCTGG
13005 ACCCTGG
1 ACCCTGG
13012 ACCCTGG
1 ACCCTGG
13019 ACCCTGG
1 ACCCTGG
13026 ACCCTGG
1 ACCCTGG
13033 ACCCT
1 ACCCT
13038 AAGCCCTACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (7 bp):
ACCCTGG
Found at i:12994 original size:14 final size:14
Alignment explanation
Indices: 12950--13044 Score: 91
Period size: 14 Copynumber: 6.8 Consensus size: 14
12940 AAGCCCTAAG
**
12950 CCCTAAACCCTAAA
1 CCCTAAACCCTGGA
**
12964 CCCTAAACCCTAAA
1 CCCTAAACCCTGGA
12978 CCCTAAACCCTGGA
1 CCCTAAACCCTGGA
**
12992 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
**
13006 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
**
13020 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
*
13034 CCCTAAGCCCT
1 CCCTAAACCCT
13045 ACTATATGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 74 1.00
ACGTcount: A:0.25, C:0.44, G:0.16, T:0.15
Consensus pattern (14 bp):
CCCTAAACCCTGGA
Found at i:13001 original size:21 final size:21
Alignment explanation
Indices: 12956--13037 Score: 92
Period size: 21 Copynumber: 3.9 Consensus size: 21
12946 TAAGCCCTAA
** **
12956 ACCCTAAACCCTAAACCCTAA
1 ACCCTAAACCCTGGACCCTGG
12977 ACCCTAAACCCTGGACCCTGG
1 ACCCTAAACCCTGGACCCTGG
**
12998 ACCCTGGACCCTGGACCCTGG
1 ACCCTAAACCCTGGACCCTGG
**
13019 ACCCTGGACCCTGGACCCT
1 ACCCTAAACCCTGGACCCT
13038 AAGCCCTACT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.24, C:0.44, G:0.17, T:0.15
Consensus pattern (21 bp):
ACCCTAAACCCTGGACCCTGG
Found at i:15474 original size:6 final size:7
Alignment explanation
Indices: 15447--15479 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
15437 TAAACCCTAA
15447 ACCCTGG
1 ACCCTGG
15454 ACCCTGG
1 ACCCTGG
15461 ACCCTGG
1 ACCCTGG
15468 A-CCTGG
1 ACCCTGG
15474 ACCCTG
1 ACCCTG
15480 AAGAGGAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.15, C:0.42, G:0.27, T:0.15
Consensus pattern (7 bp):
ACCCTGG
Found at i:15474 original size:13 final size:14
Alignment explanation
Indices: 15447--15479 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
15437 TAAACCCTAA
15447 ACCCTGGACCCTGG
1 ACCCTGGACCCTGG
15461 ACCCTGGA-CCTGG
1 ACCCTGGACCCTGG
15474 ACCCTG
1 ACCCTG
15480 AAGAGGAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.15, C:0.42, G:0.27, T:0.15
Consensus pattern (14 bp):
ACCCTGGACCCTGG
Found at i:16712 original size:7 final size:7
Alignment explanation
Indices: 16700--17168 Score: 783
Period size: 7 Copynumber: 67.7 Consensus size: 7
16690 CCGATTAACG
16700 GCCCTAA
1 GCCCTAA
16707 GCCCTAA
1 GCCCTAA
16714 GCCCTAA
1 GCCCTAA
16721 GCCCTAA
1 GCCCTAA
16728 GCCCTAA
1 GCCCTAA
16735 GCCCTAA
1 GCCCTAA
16742 GCCCTAA
1 GCCCTAA
16749 GCCCTAA
1 GCCCTAA
16756 GCCCTAA
1 GCCCTAA
16763 GCCCTAA
1 GCCCTAA
16770 GCCCTAA
1 GCCCTAA
16777 GCCCTAA
1 GCCCTAA
16784 GCCCTAA
1 GCCCTAA
16791 GCCCTAA
1 GCCCTAA
16798 GCCCTAA
1 GCCCTAA
16805 GCCCTAA
1 GCCCTAA
16812 GCCCTAA
1 GCCCTAA
16819 GCCCTAA
1 GCCCTAA
16826 GCCCTAA
1 GCCCTAA
16833 GCCCTAA
1 GCCCTAA
16840 G-CCT-A
1 GCCCTAA
16845 GCCCTAA
1 GCCCTAA
16852 GCCCTAA
1 GCCCTAA
16859 GCCCTAA
1 GCCCTAA
16866 GCCCTAA
1 GCCCTAA
16873 GCCCTAA
1 GCCCTAA
16880 GCCCTAA
1 GCCCTAA
16887 GCCCTAA
1 GCCCTAA
16894 GCCCTAA
1 GCCCTAA
16901 GCCCTAA
1 GCCCTAA
16908 GCCCTAA
1 GCCCTAA
16915 GCCCTAA
1 GCCCTAA
16922 -CCCTAA
1 GCCCTAA
16928 GCCCT-A
1 GCCCTAA
16934 GACCCT-A
1 G-CCCTAA
16941 GACCCT-A
1 G-CCCTAA
16948 GACCCTAA
1 G-CCCTAA
16956 GCCCTAA
1 GCCCTAA
16963 GCCCTAA
1 GCCCTAA
16970 GCCCTAA
1 GCCCTAA
16977 GCCCTAA
1 GCCCTAA
16984 GCCCTAA
1 GCCCTAA
16991 GCCCTAA
1 GCCCTAA
16998 GCCCTAA
1 GCCCTAA
17005 GCCCTAA
1 GCCCTAA
17012 GCCCTAA
1 GCCCTAA
17019 GCCCTAA
1 GCCCTAA
17026 G-CCTAA
1 GCCCTAA
17032 G-CCTAA
1 GCCCTAA
17038 GCCCTAA
1 GCCCTAA
17045 GCCCTAA
1 GCCCTAA
17052 GCCCTAA
1 GCCCTAA
17059 GCCCTAA
1 GCCCTAA
17066 GCCCTAA
1 GCCCTAA
17073 GCCCTAA
1 GCCCTAA
17080 GCCCTAA
1 GCCCTAA
17087 GCCCTAA
1 GCCCTAA
17094 GCCCTAA
1 GCCCTAA
17101 GCCCTAA
1 GCCCTAA
17108 GCCCTAA
1 GCCCTAA
17115 GCCCTAA
1 GCCCTAA
*
17122 ACCCTAA
1 GCCCTAA
*
17129 ACCCTAA
1 GCCCTAA
*
17136 ACCCTAA
1 GCCCTAA
*
17143 ACCCTAA
1 GCCCTAA
* *
17150 ACCTTAA
1 GCCCTAA
*
17157 ACCCTAA
1 GCCCTAA
*
17164 ACCCT
1 GCCCT
17169 GGACCCTGGA
Statistics
Matches: 453, Mismatches: 3, Indels: 12
0.97 0.01 0.03
Matches are distributed among these distances:
5 2 0.00
6 26 0.06
7 423 0.93
8 2 0.00
ACGTcount: A:0.30, C:0.43, G:0.13, T:0.15
Consensus pattern (7 bp):
GCCCTAA
Found at i:17174 original size:7 final size:7
Alignment explanation
Indices: 17164--17217 Score: 108
Period size: 7 Copynumber: 7.7 Consensus size: 7
17154 TAAACCCTAA
17164 ACCCTGG
1 ACCCTGG
17171 ACCCTGG
1 ACCCTGG
17178 ACCCTGG
1 ACCCTGG
17185 ACCCTGG
1 ACCCTGG
17192 ACCCTGG
1 ACCCTGG
17199 ACCCTGG
1 ACCCTGG
17206 ACCCTGG
1 ACCCTGG
17213 ACCCT
1 ACCCT
17218 AAGCCCTACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (7 bp):
ACCCTGG
Found at i:17174 original size:14 final size:14
Alignment explanation
Indices: 17116--17224 Score: 92
Period size: 14 Copynumber: 7.8 Consensus size: 14
17106 AAGCCCTAAG
**
17116 CCCTAAACCCTAAA
1 CCCTAAACCCTGGA
**
17130 CCCTAAACCCTAAA
1 CCCTAAACCCTGGA
* **
17144 CCCTAAACCTTAAA
1 CCCTAAACCCTGGA
17158 CCCTAAACCCTGGA
1 CCCTAAACCCTGGA
**
17172 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
**
17186 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
**
17200 CCCTGGACCCTGGA
1 CCCTAAACCCTGGA
*
17214 CCCTAAGCCCT
1 CCCTAAACCCT
17225 ACTATATGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 86 1.00
ACGTcount: A:0.28, C:0.43, G:0.14, T:0.16
Consensus pattern (14 bp):
CCCTAAACCCTGGA
Found at i:17181 original size:21 final size:21
Alignment explanation
Indices: 16902--17225 Score: 101
Period size: 21 Copynumber: 15.6 Consensus size: 21
16892 AAGCCCTAAG
* * *
16902 CCCTAAGCCCTAAGCCCT-AA
1 CCCTAAACCCTAAACCCTGGA
* * *
16922 CCCTAAGCCCTAGACCCTAGA
1 CCCTAAACCCTAAACCCTGGA
* * *
16943 CCCTAGACCCTAAGCCCT-AA
1 CCCTAAACCCTAAACCCTGGA
* * *
16963 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* * *
16984 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* * *
17005 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* * * *
17026 GCCT-AAGCCTAAGCCCT-AA
1 CCCTAAACCCTAAACCCTGGA
* * *
17045 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* * *
17066 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* * *
17087 GCCCTAAGCCCTAAGCCCT-AA
1 -CCCTAAACCCTAAACCCTGGA
* **
17108 GCCCTAAGCCCTAAACCCTAAA
1 -CCCTAAACCCTAAACCCTGGA
**
17130 CCCTAAACCCTAAACCCTAAA
1 CCCTAAACCCTAAACCCTGGA
*
17151 CCTTAAACCCTAAACCCTGGA
1 CCCTAAACCCTAAACCCTGGA
** **
17172 CCCTGGACCCTGGACCCTGGA
1 CCCTAAACCCTAAACCCTGGA
** **
17193 CCCTGGACCCTGGACCCTGGA
1 CCCTAAACCCTAAACCCTGGA
*
17214 CCCTAAGCCCTA
1 CCCTAAACCCTA
17226 CTATATGGTA
Statistics
Matches: 269, Mismatches: 30, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.05
20 23 0.09
21 231 0.86
22 2 0.01
ACGTcount: A:0.29, C:0.43, G:0.14, T:0.15
Consensus pattern (21 bp):
CCCTAAACCCTAAACCCTGGA
Found at i:19640 original size:14 final size:14
Alignment explanation
Indices: 19609--19657 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
19599 CAAATCTTAA
* **
19609 ACCCTAAACCCTAA
1 ACCCTGAACCCTGG
19623 ACCCTGAACCCTGG
1 ACCCTGAACCCTGG
*
19637 ACCCTGGA-CCTGG
1 ACCCTGAACCCTGG
19650 ACCCTGAA
1 ACCCTGAA
19658 GAGGAGGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 12 0.40
14 18 0.60
ACGTcount: A:0.29, C:0.41, G:0.16, T:0.14
Consensus pattern (14 bp):
ACCCTGAACCCTGG
Found at i:34096 original size:21 final size:21
Alignment explanation
Indices: 34054--34096 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
34044 TTTCTGGGCT
** *
34054 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCAATACCCACTCA
*
34075 AGGGGAATCAATACCCCCTCA
1 AGGGGAATCAATACCCACTCA
34096 A
1 A
34097 CGAATATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (21 bp):
AGGGGAATCAATACCCACTCA
Found at i:34819 original size:103 final size:103
Alignment explanation
Indices: 34640--34857 Score: 418
Period size: 103 Copynumber: 2.1 Consensus size: 103
34630 GTAGAGGGTC
34640 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
34705 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
* *
34743 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACATATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
34808 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
34846 TATGTGGTCCTT
1 TATGTGGTCCTT
34858 ATGGACATTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 113 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:34908 original size:23 final size:23
Alignment explanation
Indices: 34874--34936 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
34864 ATTATTATAT
34874 GGCACTAC-GGTGCAATTCTACGC
1 GGCACT-CTGGTGCAATTCTACGC
*
34897 GGCACTCTGGTGCAATTCTACGT
1 GGCACTCTGGTGCAATTCTACGC
34920 GGCACT-TAGGTGCAATT
1 GGCACTCT-GGTGCAATT
34937 ATATGAGCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
22 2 0.05
23 35 0.95
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTCTGGTGCAATTCTACGC
Found at i:41019 original size:21 final size:21
Alignment explanation
Indices: 40977--41019 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
40967 TTTCTGGGCT
* *
40977 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
40998 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
41019 A
1 A
41020 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:41788 original size:103 final size:103
Alignment explanation
Indices: 41563--41780 Score: 418
Period size: 103 Copynumber: 2.1 Consensus size: 103
41553 GTAGAGGGTC
*
41563 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTATTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
41628 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
41666 TATGTGGTCATTCGGGACATATATGTATTATTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTATTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
41731 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
41769 TATGTGGTCCTT
1 TATGTGGTCCTT
41781 ATGGACATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTATTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:41830 original size:23 final size:23
Alignment explanation
Indices: 41797--41859 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
41787 ATTATTACAT
41797 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
41820 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
41843 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
41860 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:44074 original size:2 final size:2
Alignment explanation
Indices: 44067--44094 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
44057 ATTGTTAATC
44067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
44095 GCTAAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:54608 original size:8 final size:8
Alignment explanation
Indices: 54594--54686 Score: 80
Period size: 8 Copynumber: 10.8 Consensus size: 8
54584 GCTTGAATAT
54594 GAAAAAATA
1 GAAAAAA-A
54603 -AAAAAAA
1 GAAAAAAA
*
54610 TAAAAAAAA
1 -GAAAAAAA
54619 GAGAAAAAA
1 GA-AAAAAA
54628 GGAAAAAAA
1 -GAAAAAAA
*
54637 GGAAAAAA
1 GAAAAAAA
54645 GAAAAAAA
1 GAAAAAAA
54653 GAAAAAGGAGAA
1 G-AAAA--A-AA
54665 GAAAAAAA
1 GAAAAAAA
*
54673 GAAAGAAA
1 GAAAAAAA
54681 GAAAAA
1 GAAAAA
54687 GACATAAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
7 1 0.01
8 36 0.51
9 24 0.34
10 2 0.03
11 5 0.07
12 3 0.04
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
GAAAAAAA
Found at i:54625 original size:17 final size:16
Alignment explanation
Indices: 54605--54658 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 16
54595 AAAAAATAAA
54605 AAAAATAAAAAAAAGAG
1 AAAAA-AAAAAAAAGAG
54622 AAAAAAGGAAAAAAAG-G
1 AAAAAA--AAAAAAAGAG
*
54639 AAAAAAGAAAAAA-AG
1 AAAAAAAAAAAAAGAG
54654 AAAAA
1 AAAAA
54659 GGAGAAGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 12 0.36
16 1 0.03
17 12 0.36
18 8 0.24
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAG
Found at i:54642 original size:24 final size:23
Alignment explanation
Indices: 54615--54688 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 23
54605 AAAAATAAAA
54615 AAAAGAGAAAAAAGGAAAAAAAGG
1 AAAAGAGAAAAAA-GAAAAAAAGG
* *
54639 AAAAAAGAAAAAA-AGAAAAAGG
1 AAAAGAGAAAAAAGAAAAAAAGG
* * *
54661 AGAAGA-AAAAAAGAAAGAAAGA
1 AAAAGAGAAAAAAGAAAAAAAGG
54683 AAAAGA
1 AAAAGA
54689 CATAAAAGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 6 0.15
22 23 0.56
24 12 0.29
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (23 bp):
AAAAGAGAAAAAAGAAAAAAAGG
Found at i:54664 original size:17 final size:17
Alignment explanation
Indices: 54613--54670 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 17
54603 AAAAAAATAA
54613 AAAAAAGAGAAAAAAGGA-
1 AAAAAA-AG-AAAAAGGAG
*
54631 AAAAAAGGAAAAA--AG
1 AAAAAAAGAAAAAGGAG
54646 AAAAAAAGAAAAAGGAG
1 AAAAAAAGAAAAAGGAG
54663 AAGAAAAA
1 AA-AAAAA
54671 AAGAAAGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 1 0.03
15 12 0.35
16 5 0.15
17 5 0.15
18 11 0.32
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAGGAG
Found at i:54668 original size:44 final size:43
Alignment explanation
Indices: 54594--54686 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 43
54584 GCTTGAATAT
* *
54594 GAAAAAATAAAAAAAATAAAAAAAAGAGAAAAAAGGAAAAAAA
1 GAAAAAATAAAAAAAAGAAAAAAAAGAGAAAAAAAGAAAAAAA
* ** *
54637 GGAAAAAA-GAAAAAAAGAAAAAGGAGAAGAAAAAAAGAAAGAAA
1 -GAAAAAATAAAAAAAAGAAAAAAAAG-AGAAAAAAAGAAAAAAA
54681 GAAAAA
1 GAAAAA
54687 GACATAAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 20 0.48
44 22 0.52
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (43 bp):
GAAAAAATAAAAAAAAGAAAAAAAAGAGAAAAAAAGAAAAAAA
Found at i:56090 original size:53 final size:53
Alignment explanation
Indices: 56025--56657 Score: 839
Period size: 53 Copynumber: 11.9 Consensus size: 53
56015 GTGAAGTAAC
* * *
56025 AGAAGATTGTTCGAGTTCTACTCTCTGAAGAAAGAGAGAGTGAACACGTAGGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56078 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAATAAAGAGCGAACCCGTAAGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
*
56131 AGAAGATTGTTCGAG-T-T-CTCCCTGAAGAAAGAGAAAGCGAACCCGTAGGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56181 AGAAGACTGTTCGAGTTCTACTTCCT-AAGGAAAGAGAGAGCGAACCCGTAGGT
1 AGAAGATTGTTCGAGTTCTACTCCCTGAA-GAAAGAGAGAGCGAACCCGTAGGA
* *
56234 AGAAGATTGTTCGATTCGAGTACTACTCCCTGAAGAAAGAGAGAACGAACCCGTAGGA
1 AGAAGA---TT-G-TTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56292 AGAATACTGTTCGAGTTCTGCTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56345 AGAAGATTGTTTGAGTTCTACTCCCTTAAGAAAGAGAGAGCGAACCCATAGGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56398 AGAAGACTGTTCGAGTTCTGCTCCCTGAAG-AA-AGAGAGCGAACCCGTATGA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* ** *
56449 AGAAGATTGTTCAAGTTCTACTCCCTGAAGAAAGAGAGATTGAACCCGTAGGC
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56502 AGAAGATTGTTCGAGTTATACTCCTTGAAGAAAGAGAGAGCGAACCCGTAGGC
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
*
56555 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCCATAGGCA
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAA-CCCGTAGG-A
* ** *
56610 A-AAGATTGTTCGAGTTCTTACTCCTTGAAGCGATAGAGAGCGAACCCG
1 AGAAGATTGTTCGAGTTC-TACTCCCTGAAGAAAGAGAGAGCGAACCCG
56658 ATTTCGGAGA
Statistics
Matches: 508, Mismatches: 57, Indels: 29
0.86 0.10 0.05
Matches are distributed among these distances:
50 43 0.08
51 46 0.09
52 8 0.02
53 314 0.62
54 27 0.05
55 24 0.05
56 1 0.00
57 1 0.00
58 42 0.08
59 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (53 bp):
AGAAGATTGTTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
Found at i:56494 original size:157 final size:159
Alignment explanation
Indices: 56025--56657 Score: 832
Period size: 157 Copynumber: 4.0 Consensus size: 159
56015 GTGAAGTAAC
* * * *
56025 AGAAGATTGTTCGAGTTCTACTCTCTGAAGAAAGAGAGAGTGAACACGTAGGAAGAAGATTGTTC
1 AGAAGATTGTTCGAGTTCTACTCCCTTAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTC
* * *
56090 GAGTTCTACTCCCTGAAGAAATAAAGAGCGAACCCGTAAGAAGAAGATTGTTCGAG-T-T-CTCC
66 GAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTCGAGTTCTACTCC
*
56152 CTGAAGAAAGAGAAAGCGAACCCGTAGGA
131 CTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56181 AGAAGACTGTTCGAGTTCTACTTCC-TAAGGAAAGAGAGAGCGAACCCGTAGGTAGAAGATTGTT
1 AGAAGATTGTTCGAGTTCTACTCCCTTAA-GAAAGAGAGAGCGAACCCGTAGGAAGAAGA---TT
* * * *
56245 CGATTCGAGTACTACTCCCTGAAGAAAGAGAGAACGAACCCGTAGGAAGAATACTGTTCGAGTTC
62 -G-TTCGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTCGAGTTC
*
56310 TGCTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
125 TACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGA
* * *
56345 AGAAGATTGTTTGAGTTCTACTCCCTTAAGAAAGAGAGAGCGAACCCATAGGAAGAAGACTGTTC
1 AGAAGATTGTTCGAGTTCTACTCCCTTAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTC
* * *
56410 GAGTTCTGCTCCCTGAAG-AA-AGAGAGCGAACCCGTATGAAGAAGATTGTTCAAGTTCTACTCC
66 GAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTCGAGTTCTACTCC
** *
56473 CTGAAGAAAGAGAGATTGAACCCGTAGGC
131 CTGAAGAAAGAGAGAGCGAACCCGTAGGA
* *
56502 AGAAGATTGTTCGAGTTATACT-CCTTGAAGAAAGAGAGAGCGAACCCGTAGGCAGAAGATTGTT
1 AGAAGATTGTTCGAGTTCTACTCCCTT-AAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTT
*
56566 CGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCCATAGGCAA-AAGATTGTTCGAGTTCTTA
65 CGAGTTCTACTCCCTGAAGAAAGAGAGAGCGAA-CCCGTAGG-AAGAAGATTGTTCGAGTTC-TA
* ** *
56630 CTCCTTGAAGCGATAGAGAGCGAACCCG
127 CTCCCTGAAGAAAGAGAGAGCGAACCCG
56658 ATTTCGGAGA
Statistics
Matches: 414, Mismatches: 47, Indels: 27
0.85 0.10 0.06
Matches are distributed among these distances:
155 2 0.00
156 53 0.13
157 135 0.33
158 4 0.01
159 31 0.07
160 23 0.06
161 79 0.19
162 1 0.00
163 1 0.00
164 82 0.20
165 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (159 bp):
AGAAGATTGTTCGAGTTCTACTCCCTTAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTC
GAGTTCTACTCCCTGAAGAAAGAGAGAGCGAACCCGTAGGAAGAAGATTGTTCGAGTTCTACTCC
CTGAAGAAAGAGAGAGCGAACCCGTAGGA
Found at i:60380 original size:73 final size:74
Alignment explanation
Indices: 60235--60469 Score: 418
Period size: 74 Copynumber: 3.2 Consensus size: 74
60225 ATAACCTAAT
**
60235 TTGAGCATTATCAAGAAATGACAATTTTGATAATATTCACAATGCTAGTTGAATGAGCATTATCA
1 TTGAGCATTATCAAGAAATGACAATTTTGAGCATATTCACAATGCTAGTTGAATGAGCATTATCA
60300 TTATCAAAA
66 TTATCAAAA
60309 TTGAGCATTATCAAGAAATGACAATTTTGAGCATATT-ACAATGCTAGTTGAATGAGCATTATCA
1 TTGAGCATTATCAAGAAATGACAATTTTGAGCATATTCACAATGCTAGTTGAATGAGCATTATCA
60373 TTATCAAAA
66 TTATCAAAA
* *
60382 TTGAGCATTATCAAGAAATGACAATTTTGTGCATATTCACAATGCTAGTTGAATGAACATTATCA
1 TTGAGCATTATCAAGAAATGACAATTTTGAGCATATTCACAATGCTAGTTGAATGAGCATTATCA
*
60447 TTATCAACA
66 TTATCAAAA
60456 TTGAGCATTATCAA
1 TTGAGCATTATCAA
60470 CATTGAGCAT
Statistics
Matches: 155, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
73 72 0.46
74 83 0.54
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (74 bp):
TTGAGCATTATCAAGAAATGACAATTTTGAGCATATTCACAATGCTAGTTGAATGAGCATTATCA
TTATCAAAA
Found at i:60466 original size:16 final size:16
Alignment explanation
Indices: 60445--60485 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
60435 TGAACATTAT
60445 CATTATCAACATTGAG
1 CATTATCAACATTGAG
60461 CATTATCAACATTGAG
1 CATTATCAACATTGAG
60477 CATTATCAA
1 CATTATCAA
60486 GAAATGACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (16 bp):
CATTATCAACATTGAG
Found at i:62126 original size:29 final size:31
Alignment explanation
Indices: 62067--62126 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
62057 TTATTAAAAT
* *
62067 TTAAACAAATATAAAAAAGAACATGAATACA
1 TTAAACAAATATAAAAAACAACACGAATACA
* *
62098 TTAAA-AAATA-AACAAACAACACGAGTACA
1 TTAAACAAATATAAAAAACAACACGAATACA
62127 ATCGTTTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 15 0.60
30 5 0.20
31 5 0.20
ACGTcount: A:0.63, C:0.13, G:0.07, T:0.17
Consensus pattern (31 bp):
TTAAACAAATATAAAAAACAACACGAATACA
Found at i:71438 original size:24 final size:24
Alignment explanation
Indices: 71411--71475 Score: 94
Period size: 25 Copynumber: 2.7 Consensus size: 24
71401 GATTTATCTC
71411 GAAGGACCGCGTAGAATTTGTCCA
1 GAAGGACCGCGTAGAATTTGTCCA
** *
71435 GAAGGACCATGTAGAAATTTGTCCC
1 GAAGGACCGCGTAG-AATTTGTCCA
71460 GAAGGACCGCGTAGAA
1 GAAGGACCGCGTAGAA
71476 CCCTCGACTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 14 0.40
25 21 0.60
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.18
Consensus pattern (24 bp):
GAAGGACCGCGTAGAATTTGTCCA
Found at i:74258 original size:18 final size:18
Alignment explanation
Indices: 74237--74299 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
74227 CGTTCATACC
*
74237 CTCCAGTCCATACATATG
1 CTCCAGCCCATACATATG
*
74255 CTCC-GACCCATCCATACT-
1 CTCCAG-CCCATACATA-TG
*
74273 CTCCAGCCCGTACATATG
1 CTCCAGCCCATACATATG
*
74291 CTCCGGCCC
1 CTCCAGCCC
74300 GTCCATACTC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
17 2 0.06
18 32 0.89
19 2 0.06
ACGTcount: A:0.21, C:0.44, G:0.13, T:0.22
Consensus pattern (18 bp):
CTCCAGCCCATACATATG
Found at i:74271 original size:36 final size:36
Alignment explanation
Indices: 74231--74316 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 36
74221 CTGGCCCGTT
* *
74231 CATACCCTCCAGTCCATACATATGCTCCGACCCATC
1 CATACTCTCCAGCCCATACATATGCTCCGACCCATC
* * *
74267 CATACTCTCCAGCCCGTACATATGCTCCGGCCCGTC
1 CATACTCTCCAGCCCATACATATGCTCCGACCCATC
74303 CATACTCTCCAGCC
1 CATACTCTCCAGCC
74317 TGTATAGCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.21, C:0.45, G:0.12, T:0.22
Consensus pattern (36 bp):
CATACTCTCCAGCCCATACATATGCTCCGACCCATC
Found at i:74300 original size:18 final size:18
Alignment explanation
Indices: 74247--74306 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
74237 CTCCAGTCCA
* *
74247 TACATATGCTCCGACCCA
1 TACATATGCTCCGGCCCG
* *
74265 TCCATACT-CTCCAGCCCG
1 TACATA-TGCTCCGGCCCG
74283 TACATATGCTCCGGCCCG
1 TACATATGCTCCGGCCCG
*
74301 TCCATA
1 TACATA
74307 CTCTCCAGCC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.22, C:0.42, G:0.13, T:0.23
Consensus pattern (18 bp):
TACATATGCTCCGGCCCG
Found at i:74312 original size:18 final size:18
Alignment explanation
Indices: 74255--74312 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
74245 CATACATATG
* *
74255 CTCCGACCCATCCATACT
1 CTCCGGCCCGTCCATACT
* *
74273 CTCCAGCCCGTACATA-T
1 CTCCGGCCCGTCCATACT
74290 GCTCCGGCCCGTCCATACT
1 -CTCCGGCCCGTCCATACT
74309 CTCC
1 CTCC
74313 AGCCTGTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.17, C:0.48, G:0.12, T:0.22
Consensus pattern (18 bp):
CTCCGGCCCGTCCATACT
Found at i:89319 original size:12 final size:12
Alignment explanation
Indices: 89302--89334 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
89292 GGTTTCTAAT
89302 ATTCTTGTTATC
1 ATTCTTGTTATC
*
89314 ATTCTTGTTATT
1 ATTCTTGTTATC
89326 ATTCTTGTT
1 ATTCTTGTT
89335 TTTTGAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.09, T:0.64
Consensus pattern (12 bp):
ATTCTTGTTATC
Found at i:93035 original size:19 final size:19
Alignment explanation
Indices: 93008--93044 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
92998 ACCGGACTAC
93008 CAAAACAGGGAATAATAAG
1 CAAAACAGGGAATAATAAG
* *
93027 CAAAGCAGGGAATGATAA
1 CAAAACAGGGAATAATAA
93045 AAGAGTATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.11, G:0.24, T:0.11
Consensus pattern (19 bp):
CAAAACAGGGAATAATAAG
Found at i:99405 original size:17 final size:17
Alignment explanation
Indices: 99383--99415 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99373 CTTCTCTCGT
*
99383 AAATCCCTAATCCTCCA
1 AAATCCCTAACCCTCCA
99400 AAATCCCTAACCCTCC
1 AAATCCCTAACCCTCC
99416 TTTCTCTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.21
Consensus pattern (17 bp):
AAATCCCTAACCCTCCA
Found at i:99637 original size:3 final size:3
Alignment explanation
Indices: 99629--99663 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
99619 AATGAGGGGT
* *
99629 TTA TTA TTA TTA TTA TCA TTA TTA TTG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
99664 TAAATCTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:102004 original size:37 final size:37
Alignment explanation
Indices: 101963--102067 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
101953 GTGCTTGTGG
* *
101963 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
* * * *
102000 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
*
102037 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAG
102068 GACGAAAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
Found at i:103123 original size:106 final size:106
Alignment explanation
Indices: 102798--104052 Score: 1799
Period size: 106 Copynumber: 11.9 Consensus size: 106
102788 GCATTGTTCT
* ** ** * *
102798 GAGTCCAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGGAACCT-GGAAATTGTTTGCTGACA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-GAAATTGGGAAGTTGTTTGTTGACA
** * * *
102862 ACCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
102904 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * * * *
102963 TCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGCCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * * * *
103005 G-GTTCAAGATCCTTCGCTGAGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
103069 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
103110 GAGTCTAATATCCTAT-GCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
1 GAGTCCAATATCCT-TCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* *
103174 ACCAACGGTTCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
103216 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
103281 CCAGTGGTCCCTTCGTCGTGAAGTTGAACCTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
103322 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
103387 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
103428 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGATAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
103493 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
103534 GAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
103599 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
103640 CAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTAACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
103705 CCAGTGGTCTCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
103746 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
103811 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
103852 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
103917 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*** * ** *
103958 GAGTCCAATATCCTTCACAGTGAAGTTGAAATTGGCTCTGAAATTGGGATGTCATTTGTTAACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
104023 CCAGCCGTCCCTTCGTTGTGAAGTTGAACT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACT
104053 CCACTCTCGA
Statistics
Matches: 1042, Mismatches: 97, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
100 76 0.07
101 5 0.00
102 4 0.00
103 1 0.00
104 4 0.00
105 5 0.00
106 946 0.91
107 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:104822 original size:22 final size:22
Alignment explanation
Indices: 104796--104850 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
104786 TTATGTTTGG
104796 TCAAAGGTTTGGGATTTGATGC
1 TCAAAGGTTTGGGATTTGATGC
*
104818 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGGATTTGATGC
104840 TCAAAGGTTTG
1 TCAAAGGTTTG
104851 ATGGGGTAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.09, G:0.29, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGGATTTGATGC
Found at i:105485 original size:36 final size:36
Alignment explanation
Indices: 105445--105522 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
105435 TTTGCATGTG
*
105445 CTTTTTGTCCCTTTTTCTTT-TTGATTTTTGTTC-TTT
1 CTTTTTGTCCCTTTTT-TTTCTT-ATTTTTCTTCTTTT
* * *
105481 CTTTTTTTTCCTTTTTTTTCTTCTTTTTCTTCTTTT
1 CTTTTTGTCCCTTTTTTTTCTTATTTTTCTTCTTTT
105517 CTTTTT
1 CTTTTT
105523 TTTCTTGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 11 0.31
36 25 0.69
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.77
Consensus pattern (36 bp):
CTTTTTGTCCCTTTTTTTTCTTATTTTTCTTCTTTT
Found at i:105488 original size:23 final size:22
Alignment explanation
Indices: 105462--105516 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
105452 TCCCTTTTTC
*
105462 TTTTTGATTTTTGTTCTTTCTTT
1 TTTTTCATTTTTGTTC-TTCTTT
* *
105485 TTTTTCCTTTTTTTTCTTCTTT
1 TTTTTCATTTTTGTTCTTCTTT
*
105507 TTCTTC-TTTT
1 TTTTTCATTTT
105517 CTTTTTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 4 0.14
22 11 0.39
23 13 0.46
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.80
Consensus pattern (22 bp):
TTTTTCATTTTTGTTCTTCTTT
Found at i:105495 original size:22 final size:21
Alignment explanation
Indices: 105470--105516 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
105460 TCTTTTTGAT
*
105470 TTTTGTTCT-TTCTTTTTTTTCC
1 TTTT-TTCTCTTCTTTTTCTT-C
*
105492 TTTTTTTTCTTCTTTTTCTTC
1 TTTTTTCTCTTCTTTTTCTTC
105513 TTTT
1 TTTT
105517 CTTTTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTTTCTCTTCTTTTTCTTC
Found at i:105498 original size:26 final size:26
Alignment explanation
Indices: 105469--105528 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
105459 TTCTTTTTGA
*
105469 TTTTTGTTCTTTCTT-TT-TTTTCCTTT
1 TTTTTCTTCTTT-TTCTTCTTTT-CTTT
105495 TTTTTCTTCTTTTTCTTCTTTTCTTT
1 TTTTTCTTCTTTTTCTTCTTTTCTTT
105521 TTTTTCTT
1 TTTTTCTT
105529 GATTGGATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 25 0.81
27 4 0.13
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.82
Consensus pattern (26 bp):
TTTTTCTTCTTTTTCTTCTTTTCTTT
Found at i:105521 original size:22 final size:22
Alignment explanation
Indices: 105469--105528 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
105459 TTCTTTTTGA
* *
105469 TTTTTGTTCTTTCTTTTTTTTCC
1 TTTTTTTTC-TTCTTTTTCTTCC
*
105492 TTTTTTTTCTTCTTTTTCTTCT
1 TTTTTTTTCTTCTTTTTCTTCC
*
105514 TTTCTTTTTTTTCTT
1 TTT-TTTTTCTTCTT
105529 GATTGGATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTTTTTCTTCTTTTTCTTCC
Found at i:105527 original size:9 final size:9
Alignment explanation
Indices: 105456--105528 Score: 69
Period size: 9 Copynumber: 7.9 Consensus size: 9
105446 TTTTTGTCCC
105456 TTTTTCTTT
1 TTTTTCTTT
105465 TTGATTT-TTGT
1 TT--TTTCTT-T
*
105476 TCTTTCTTT
1 TTTTTCTTT
105485 TTTTTCCTTT
1 TTTTT-CTTT
*
105495 TTTTTCTTC
1 TTTTTCTTT
105504 TTTTTC-TT
1 TTTTTCTTT
*
105512 CTTTTCTTT
1 TTTTTCTTT
105521 TTTTTCTT
1 TTTTTCTT
105529 GATTGGATCT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 6 0.12
9 28 0.54
10 13 0.25
11 5 0.10
ACGTcount: A:0.01, C:0.15, G:0.03, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:105858 original size:14 final size:14
Alignment explanation
Indices: 105839--105875 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
105829 ATGCATGATA
*
105839 GAATTATTTCGGAT
1 GAATTATTTCAGAT
105853 GAATTATTTCAGAT
1 GAATTATTTCAGAT
105867 GAATT-TTTC
1 GAATTATTTC
105876 TTCTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (14 bp):
GAATTATTTCAGAT
Found at i:110739 original size:37 final size:37
Alignment explanation
Indices: 110698--110802 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
110688 GTGCTTGTGG
* * *
110698 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
110735 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
*
110772 ATCCTATTTTTAGGAATTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
110803 GATGAAAATG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:111627 original size:27 final size:25
Alignment explanation
Indices: 111553--111627 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 25
111543 CAAATAATCT
111553 TTTAAAAAATATATATATATAGTGAATA
1 TTTAAAAAAT-TATATA-A-AGTGAATA
111581 TTTAAAAAATTATGAT-AAGTGAAATAA
1 TTTAAAAAATTAT-ATAAAGTG-AAT-A
*
111608 TTTAAAAAGTTATATAAAGT
1 TTTAAAAAATTATATAAAGT
111628 AAGTAGAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
25 4 0.10
26 6 0.14
27 20 0.48
28 12 0.29
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.37
Consensus pattern (25 bp):
TTTAAAAAATTATATAAAGTGAATA
Found at i:116478 original size:15 final size:15
Alignment explanation
Indices: 116458--116487 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
116448 GCACTCGGAG
116458 CACTCGAATGCAGTT
1 CACTCGAATGCAGTT
*
116473 CACTCGAATTCAGTT
1 CACTCGAATGCAGTT
116488 GAGGAAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (15 bp):
CACTCGAATGCAGTT
Found at i:121160 original size:2 final size:2
Alignment explanation
Indices: 121153--121182 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121143 TTAGTGACCA
121153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121183 TTCTTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:123755 original size:30 final size:30
Alignment explanation
Indices: 123721--123780 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
123711 GAGGATGTTT
*
123721 GGTACTGATTTCGTCATCATAAGTTTTGTA
1 GGTACTGATTACGTCATCATAAGTTTTGTA
123751 GGTACTGATTACGTCATCATAAGTTTTGTA
1 GGTACTGATTACGTCATCATAAGTTTTGTA
123781 TGTTGATGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (30 bp):
GGTACTGATTACGTCATCATAAGTTTTGTA
Found at i:125057 original size:31 final size:31
Alignment explanation
Indices: 125019--125081 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
125009 CCCAAGAGTT
125019 TGGGAGTTCCTAGTGAGAAGGACATATTGAA
1 TGGGAGTTCCTAGTGAGAAGGACATATTGAA
*
125050 TGGGAGTTCCTAGTGAGAATGACATATTGAA
1 TGGGAGTTCCTAGTGAGAAGGACATATTGAA
125081 T
1 T
125082 TCACCGAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (31 bp):
TGGGAGTTCCTAGTGAGAAGGACATATTGAA
Found at i:126414 original size:16 final size:16
Alignment explanation
Indices: 126385--126425 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
126375 CGTTCATTTA
126385 ATAAAT-AA-ACGAAC
1 ATAAATGAACACGAAC
126399 ATAAATGAACACGAAC
1 ATAAATGAACACGAAC
*
126415 ATAAACGAACA
1 ATAAATGAACA
126426 AATTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.25
15 2 0.08
16 16 0.67
ACGTcount: A:0.61, C:0.17, G:0.10, T:0.12
Consensus pattern (16 bp):
ATAAATGAACACGAAC
Found at i:126515 original size:14 final size:14
Alignment explanation
Indices: 126496--126528 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
126486 AATAATAAAT
126496 GAACACGAACGAAC
1 GAACACGAACGAAC
126510 GAACACGAACGAAC
1 GAACACGAACGAAC
126524 GAACA
1 GAACA
126529 TAAACGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.52, C:0.27, G:0.21, T:0.00
Consensus pattern (14 bp):
GAACACGAACGAAC
Found at i:126534 original size:10 final size:10
Alignment explanation
Indices: 126521--126548 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
126511 AACACGAACG
126521 AACGAACATA
1 AACGAACATA
126531 AACGAACATA
1 AACGAACATA
126541 AACGAACA
1 AACGAACA
126549 ACACAAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.21, G:0.11, T:0.07
Consensus pattern (10 bp):
AACGAACATA
Found at i:126534 original size:14 final size:14
Alignment explanation
Indices: 126496--126537 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
126486 AATAATAAAT
*
126496 GAACACGAACGAAC
1 GAACACAAACGAAC
*
126510 GAACACGAACGAAC
1 GAACACAAACGAAC
*
126524 GAACATAAACGAAC
1 GAACACAAACGAAC
126538 ATAAACGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.02
Consensus pattern (14 bp):
GAACACAAACGAAC
Found at i:126534 original size:24 final size:23
Alignment explanation
Indices: 126507--126563 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
126497 AACACGAACG
* *
126507 AACGAACACGAACGAACGAACATA
1 AACGAACACAAACGAAC-AACACA
*
126531 AACGAACATAAACGAACAACACA
1 AACGAACACAAACGAACAACACA
126554 AAC--ACACAAA
1 AACGAACACAAA
126564 AATTATTCGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 6 0.21
23 8 0.28
24 15 0.52
ACGTcount: A:0.60, C:0.26, G:0.11, T:0.04
Consensus pattern (23 bp):
AACGAACACAAACGAACAACACA
Found at i:126535 original size:18 final size:18
Alignment explanation
Indices: 126500--126537 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
126490 ATAAATGAAC
*
126500 ACGAACGAACGAACACGA
1 ACGAACGAACGAAAACGA
126518 ACGAACGAAC-ATAAACGA
1 ACGAACGAACGA-AAACGA
126536 AC
1 AC
126538 ATAAACGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.53, C:0.26, G:0.18, T:0.03
Consensus pattern (18 bp):
ACGAACGAACGAAAACGA
Found at i:126837 original size:24 final size:26
Alignment explanation
Indices: 126806--126861 Score: 98
Period size: 24 Copynumber: 2.2 Consensus size: 26
126796 TGCCCTCTGT
126806 TCGAACATAAATGAACGAACATA-AA
1 TCGAACATAAATGAACGAACATATAA
126831 T-GAACATAAATGAACGAACATATAA
1 TCGAACATAAATGAACGAACATATAA
126856 TCGAAC
1 TCGAAC
126862 GTTCACGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 21 0.72
25 4 0.14
26 4 0.14
ACGTcount: A:0.54, C:0.16, G:0.12, T:0.18
Consensus pattern (26 bp):
TCGAACATAAATGAACGAACATATAA
Found at i:126861 original size:16 final size:14
Alignment explanation
Indices: 126807--126862 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
126797 GCCCTCTGTT
126807 CGAACATAAATGAA
1 CGAACATAAATGAA
126821 CGAACATAAAT---
1 CGAACATAAATGAA
126832 -GAACATAAATGAA
1 CGAACATAAATGAA
126845 CGAACATATAATCGAA
1 CGAACATA-AAT-GAA
126861 CG
1 CG
126863 TTCACGAACG
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
10 10 0.28
14 18 0.50
15 3 0.08
16 5 0.14
ACGTcount: A:0.54, C:0.16, G:0.14, T:0.16
Consensus pattern (14 bp):
CGAACATAAATGAA
Found at i:126920 original size:43 final size:39
Alignment explanation
Indices: 126873--126968 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 39
126863 TTCACGAACG
*
126873 TAAATGAACGAACGAGCCCTTTGTTCATGTTCGTTCATTTAA
1 TAAATGAACGAAC-A-ACC-TTGTTCATGTTCGTTCATTTAA
* *
126915 TTAAATGAACGCAA-AATCTTGTTCATGTTCGTTTATTTAA
1 -TAAATGAACG-AACAACCTTGTTCATGTTCGTTCATTTAA
*
126955 TAAATAAACGAACA
1 TAAATGAACGAACA
126969 TAAACGAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
38 2 0.04
39 10 0.21
40 21 0.45
41 1 0.02
42 1 0.02
43 10 0.21
44 2 0.04
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (39 bp):
TAAATGAACGAACAACCTTGTTCATGTTCGTTCATTTAA
Found at i:128740 original size:64 final size:64
Alignment explanation
Indices: 128642--128766 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 64
128632 ATGCACCAAT
*
128642 CCATGCATCGATGCACCATGGATTAAATTGAACATCGAATGCATTTTATGCATCAATGCACATA
1 CCATGCATCGATGCACCATGGACTAAATTGAACATCGAATGCATTTTATGCATCAATGCACATA
** *
128706 CCATGCATCGATGCACTC-TGG-CTATTTTGAAACATCGAATGCATTTTATGCATCGATGCAC
1 CCATGCATCGATGCAC-CATGGACTAAATTG-AACATCGAATGCATTTTATGCATCAATGCAC
128767 TCTTAGTGCA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
63 5 0.09
64 49 0.89
65 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (64 bp):
CCATGCATCGATGCACCATGGACTAAATTGAACATCGAATGCATTTTATGCATCAATGCACATA
Found at i:133141 original size:23 final size:23
Alignment explanation
Indices: 133111--133162 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
133101 CGATGGTTCC
** *
133111 ATGTGGTCCTTTGGGACAAACCT
1 ATGTGGTCCTTCAGGACAAAACT
133134 ATGTGGTCCTTCAGGACAAAACT
1 ATGTGGTCCTTCAGGACAAAACT
133157 ATGTGG
1 ATGTGG
133163 ACAAATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (23 bp):
ATGTGGTCCTTCAGGACAAAACT
Found at i:136691 original size:49 final size:49
Alignment explanation
Indices: 136626--136936 Score: 426
Period size: 49 Copynumber: 6.4 Consensus size: 49
136616 GAGGTTAAGC
* * **
136626 ATTTAGCTCGTCTGACGTCTTTGTGACTGAAGTGCTACTATTAATGATG
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* * *
136675 ATTTAGCACGTTTGACGTCTTTGTGTCGGTGGTGCTACTACTAATGATG
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* *
136724 ATTCAGCACGTCTGACGTCTTTGTGACGGTGGTGTTACTATTAATGATG
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* *
136773 ATTTAGCACGTCTGACGTCTGTGTGACGGTGGTGTTACTATTAATGATG
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* * *
136822 ATTTAGCACATTTGACGTCTTTGTGATGGTGGTGCTACTATTAATGATG
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* * * * *
136871 ATTTAGCACGTCTGACATCTGTGTGACGGTGGTGTTATTATTAATGATA
1 ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
* *
136920 AATTA-CACTTCTGACGT
1 ATTTAGCACGTCTGACGT
136937 TATTGATGTA
Statistics
Matches: 232, Mismatches: 30, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
48 10 0.04
49 222 0.96
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (49 bp):
ATTTAGCACGTCTGACGTCTTTGTGACGGTGGTGCTACTATTAATGATG
Found at i:137660 original size:22 final size:22
Alignment explanation
Indices: 137635--137683 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
137625 CACCACTGCT
137635 CACATAATTTGCACCGAAGTG-C
1 CACATAATTTGCACCGAAG-GAC
**
137657 CACAT-ATTTGTTCCGAAGGAC
1 CACATAATTTGCACCGAAGGAC
137678 CACATA
1 CACATA
137684 GTTTTGTCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (22 bp):
CACATAATTTGCACCGAAGGAC
Found at i:137704 original size:23 final size:23
Alignment explanation
Indices: 137675--137730 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
137665 TGTTCCGAAG
*
137675 GACCACATAGTTTTGTCCCAAAA
1 GACCACATAGGTTTGTCCCAAAA
** *
137698 GTTCACATAGGTTTGTCCCGAAA
1 GACCACATAGGTTTGTCCCAAAA
137721 GACCACATAG
1 GACCACATAG
137731 AACCCTCGAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
GACCACATAGGTTTGTCCCAAAA
Found at i:142004 original size:29 final size:30
Alignment explanation
Indices: 141970--142035 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
141960 CCCGAAGGAC
141970 CTATCCAGAGGTCACAAAG-ACCCCGACAA
1 CTATCCAGAGGTCACAAAGAACCCCGACAA
* *
141999 CTATCCAGAGGTCATAAAGAACCTCGACAA
1 CTATCCAGAGGTCACAAAGAACCCCGACAA
*
142029 CTGTCCA
1 CTATCCA
142036 TATGTCCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 18 0.55
30 15 0.45
ACGTcount: A:0.36, C:0.32, G:0.17, T:0.15
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGAACCCCGACAA
Found at i:142062 original size:31 final size:31
Alignment explanation
Indices: 142027--142091 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
142017 GAACCTCGAC
*
142027 AACTGTCCATATGTCCCGAATA-ACCTAGGTA
1 AACTGTCCATATGTCCCGAA-AGACATAGGTA
*
142058 AACTGTCCATATGTCTCGAAAGACATAGGTA
1 AACTGTCCATATGTCCCGAAAGACATAGGTA
142089 AAC
1 AAC
142092 CCTCGACTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (31 bp):
AACTGTCCATATGTCCCGAAAGACATAGGTA
Found at i:143295 original size:20 final size:22
Alignment explanation
Indices: 143270--143327 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
143260 TTCCCCTTGA
143270 AGTGCATCGATGCATGC-T-AC
1 AGTGCATCGATGCATGCTTAAC
*
143290 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATGC-TTAAC
143313 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
143328 CCATTTGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (22 bp):
AGTGCATCGATGCATGCTTAAC
Found at i:150692 original size:63 final size:63
Alignment explanation
Indices: 150588--150949 Score: 537
Period size: 63 Copynumber: 5.7 Consensus size: 63
150578 ACCAAGGATG
* *
150588 CCTGTGATGAC-CCAACCACAAAGGATGCCAGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
1 CCTGTGATG-CTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
* * *
150651 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAATTCCAACCGCGGAGTGTTGGGGTAATC
1 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
* * * *
150714 CCTGTGTTGCTCCAACCGCAAAGAATGCCTGCTCAACTCCAACTGCAGAGTCTTGGGATAATC
1 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
* *
150777 CCTGTGTTGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACTGCAGAGTCTTGGGGTAATC
1 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
** * * *
150840 CCTCAGATCCTCCAACCGCAAAGGATGCCGGCTCAACTTCAACCGCAGAGTCTTGGGGTAATC
1 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
* * *
150903 CCTGTGATCCTCCAACTGCAAAGGATGCCAGCTCAACTCCAACCGCA
1 CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCA
150950 AAGGATGCCT
Statistics
Matches: 272, Mismatches: 26, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
62 1 0.00
63 271 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (63 bp):
CCTGTGATGCTCCAACCGCAAAGGATGCCTGCTCAACTCCAACCGCAGAGTCTTGGGGTAATC
Found at i:150950 original size:27 final size:27
Alignment explanation
Indices: 150912--150976 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
150902 CCCTGTGATC
*
150912 CTCCAACTGCAAAGGATGCCAGCTCAA
1 CTCCAACCGCAAAGGATGCCAGCTCAA
*
150939 CTCCAACCGCAAAGGATGCCTGCTCAA
1 CTCCAACCGCAAAGGATGCCAGCTCAA
150966 CTCCAACCGCA
1 CTCCAACCGCA
150977 GAGTCTCGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.38, G:0.17, T:0.14
Consensus pattern (27 bp):
CTCCAACCGCAAAGGATGCCAGCTCAA
Found at i:151263 original size:6 final size:6
Alignment explanation
Indices: 151248--151306 Score: 100
Period size: 6 Copynumber: 9.8 Consensus size: 6
151238 CCCATGGGAA
*
151248 CATTAT CATTAC CATTAC CATTAC CATTAC CATTAC CATTAC CATTAC
1 CATTAC CATTAC CATTAC CATTAC CATTAC CATTAC CATTAC CATTAC
*
151296 TATTAC CATTA
1 CATTAC CATTA
151307 ACCACCTCCT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (6 bp):
CATTAC
Found at i:152173 original size:59 final size:60
Alignment explanation
Indices: 152015--152176 Score: 168
Period size: 60 Copynumber: 2.7 Consensus size: 60
152005 ATCGTACGTA
* * * * * *
152015 CTCAAACTATGACTCTCATTTTATATTGGTCCCTAAACTTTTAAACATTTTAATTTCATC
1 CTCAAACTATGAATCTCATTCTAAATTGGTCCATAAACTTTTAAACATTCTAATTTAATC
* * * * *
152075 CTTAAACTAT-AACTATCATTCTAAATTAGT-CATTAAACTTTTGAACATTCTATTTTAATC
1 CTCAAACTATGAA-TCTCATTCTAAATTGGTCCA-TAAACTTTTAAACATTCTAATTTAATC
* *
152135 C-CAAACAATGAATCTCATTCTAAATTGGTCCATGAACTTTTA
1 CTCAAACTATGAATCTCATTCTAAATTGGTCCATAAACTTTTA
152177 GATCTTTCAA
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
59 31 0.38
60 50 0.62
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.41
Consensus pattern (60 bp):
CTCAAACTATGAATCTCATTCTAAATTGGTCCATAAACTTTTAAACATTCTAATTTAATC
Found at i:152430 original size:29 final size:30
Alignment explanation
Indices: 152374--152443 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 30
152364 TGAAGATCAC
*
152374 AGTTTGAGGATGAAAAATAAAATATTCAAA
1 AGTTTGAGGATGAAAAACAAAATATTCAAA
* *
152404 AGTTTGAGGATG-AAAACAAAATGTTCAGA
1 AGTTTGAGGATGAAAAACAAAATATTCAAA
152433 AGTTTGAGGAT
1 AGTTTGAGGAT
152444 TAATTTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 25 0.68
30 12 0.32
ACGTcount: A:0.46, C:0.04, G:0.23, T:0.27
Consensus pattern (30 bp):
AGTTTGAGGATGAAAAACAAAATATTCAAA
Found at i:153799 original size:29 final size:29
Alignment explanation
Indices: 153765--153826 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
153755 GAACATAATA
*
153765 AATAGTCGA-GTGATCATTTTGTAA-TTGTT
1 AATAGTCGATG-GATCATTTTATAACTT-TT
153794 AATAGTCGATGGATCATTTTATAACTTTT
1 AATAGTCGATGGATCATTTTATAACTTTT
153823 AATA
1 AATA
153827 TTCAAGGGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (29 bp):
AATAGTCGATGGATCATTTTATAACTTTT
Found at i:166934 original size:37 final size:37
Alignment explanation
Indices: 166893--167029 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
166883 TCACCAATTT
166893 AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAA
1 AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAA
*
166930 AGGTTTCATAAGAAATTTAAGTA-TTTTTCTTATTAA
1 AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAA
*
166966 AGGTTTCATAAGAAATTTGAGTACTTTTTCTTATTAA
1 AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAA
*
167003 AGGTTTCATAAGAAATTTGGGTATTTT
1 AGGTTTCATAAGAAATTTGAGTATTTT
167030 CTTATTGAAG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 35 0.37
37 60 0.63
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.47
Consensus pattern (37 bp):
AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAA
Found at i:166978 original size:73 final size:72
Alignment explanation
Indices: 166893--167035 Score: 250
Period size: 73 Copynumber: 2.0 Consensus size: 72
166883 TCACCAATTT
*
166893 AGGTTTCATAAGAAATTTGAGTATTTTTTCTTATTAAAGGTTTCATAAGAAATTTAAGTATTTTT
1 AGGTTTCATAAGAAATTTGAGTACTTTTTCTTATTAAAGGTTTCATAAGAAATTTAAGTA-TTTT
166958 CTTATTAA
65 CTTATTAA
**
166966 AGGTTTCATAAGAAATTTGAGTACTTTTTCTTATTAAAGGTTTCATAAGAAATTTGGGTATTTTC
1 AGGTTTCATAAGAAATTTGAGTACTTTTTCTTATTAAAGGTTTCATAAGAAATTTAAGTATTTTC
167031 TTATT
66 TTATT
167036 GAAGTTGCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
72 10 0.15
73 57 0.85
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (72 bp):
AGGTTTCATAAGAAATTTGAGTACTTTTTCTTATTAAAGGTTTCATAAGAAATTTAAGTATTTTC
TTATTAA
Found at i:169209 original size:2 final size:2
Alignment explanation
Indices: 169202--169229 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
169192 GACCAAAAGC
169202 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
169230 CATCAACGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:169400 original size:24 final size:22
Alignment explanation
Indices: 169363--169422 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
169353 AATTACACCA
* *
169363 AAGTGCCGCGTAGAATATGTACC
1 AAGTGCCACATAGAA-ATGTACC
*
169386 GAAGTGCCACATAGAAATGTTCC
1 -AAGTGCCACATAGAAATGTACC
*
169409 AAATGACCACATAG
1 AAGTG-CCACATAG
169423 TATTGTCCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 4 0.13
23 14 0.45
24 13 0.42
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
AAGTGCCACATAGAAATGTACC
Found at i:169467 original size:23 final size:23
Alignment explanation
Indices: 169371--169490 Score: 91
Period size: 23 Copynumber: 5.2 Consensus size: 23
169361 CAAAGTGCCG
*
169371 CGTAGAATATGTACCGAAGTG-CCA
1 CGTAGAA-ATGTCCCGAA-TGACCA
* * *
169395 CATAGAAATGTTCCAAATGACCA
1 CGTAGAAATGTCCCGAATGACCA
* * * * **
169418 CATAGTATTGTCCTGAA-GAACTG
1 CGTAGAAATGTCCCGAATG-ACCA
169441 CGTAGAAATGTCCCGAATGACCA
1 CGTAGAAATGTCCCGAATGACCA
* *
169464 CGTAGAATTGTCCCGAATGACCG
1 CGTAGAAATGTCCCGAATGACCA
169487 CGTA
1 CGTA
169491 AAACCCTCGA
Statistics
Matches: 75, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
22 3 0.04
23 65 0.87
24 7 0.09
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (23 bp):
CGTAGAAATGTCCCGAATGACCA
Found at i:169490 original size:46 final size:46
Alignment explanation
Indices: 169371--169490 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 46
169361 CAAAGTGCCG
* * * *
169371 CGTAGAATATGTACCGAAGTG-CCACATAGAAATGTTCCAAATGACCA
1 CGTAGAAT-TGTCCCGAA-TGACCGCGTAGAAATGTCCCAAATGACCA
* * * * *
169418 CATAGTATTGTCCTGAA-GAACTGCGTAGAAATGTCCCGAATGACCA
1 CGTAGAATTGTCCCGAATG-ACCGCGTAGAAATGTCCCAAATGACCA
169464 CGTAGAATTGTCCCGAATGACCGCGTA
1 CGTAGAATTGTCCCGAATGACCGCGTA
169491 AAACCCTCGA
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
44 1 0.02
46 49 0.86
47 7 0.12
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (46 bp):
CGTAGAATTGTCCCGAATGACCGCGTAGAAATGTCCCAAATGACCA
Found at i:169606 original size:16 final size:16
Alignment explanation
Indices: 169580--169628 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
169570 TCACATAGCT
*
169580 TATATCACATAGA-CA
1 TATAACACATAGATCA
169595 TATAAGCACATAGATCA
1 TATAA-CACATAGATCA
*
169612 TGTAACACATAGATCA
1 TATAACACATAGATCA
169628 T
1 T
169629 GTAGAACAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 4 0.13
16 20 0.67
17 6 0.20
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (16 bp):
TATAACACATAGATCA
Found at i:169629 original size:16 final size:17
Alignment explanation
Indices: 169585--169631 Score: 71
Period size: 16 Copynumber: 2.9 Consensus size: 17
169575 TAGCTTATAT
*
169585 CACATAGA-CATATAAG
1 CACATAGATCATGTAAG
169601 CACATAGATCATGTAA-
1 CACATAGATCATGTAAG
169617 CACATAGATCATGTA
1 CACATAGATCATGTA
169632 GAACAATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (17 bp):
CACATAGATCATGTAAG
Found at i:173712 original size:17 final size:17
Alignment explanation
Indices: 173690--173724 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
173680 AAAGTATAGG
**
173690 GGTCTTTCGTTTATTTT
1 GGTCTTTCAATTATTTT
173707 GGTCTTTCAATTATTTT
1 GGTCTTTCAATTATTTT
173724 G
1 G
173725 TGATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (17 bp):
GGTCTTTCAATTATTTT
Found at i:175005 original size:12 final size:12
Alignment explanation
Indices: 174988--175078 Score: 116
Period size: 12 Copynumber: 7.8 Consensus size: 12
174978 TGTCGAGCTT
174988 GAATCGAGCTCA
1 GAATCGAGCTCA
*
175000 GAATCGAGCT-T
1 GAATCGAGCTCA
175011 GAATCGAGCTCA
1 GAATCGAGCTCA
* * *
175023 TAATAGAGCT-T
1 GAATCGAGCTCA
175034 GAATCGAGCTCA
1 GAATCGAGCTCA
*
175046 GAATCGAGCT-T
1 GAATCGAGCTCA
175057 GAATCGAGCTCA
1 GAATCGAGCTCA
175069 GAATCGAGCT
1 GAATCGAGCT
175079 TCAATCGAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
11 28 0.42
12 38 0.58
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (12 bp):
GAATCGAGCTCA
Found at i:175010 original size:23 final size:23
Alignment explanation
Indices: 174980--175089 Score: 193
Period size: 23 Copynumber: 4.8 Consensus size: 23
174970 TGGGGCAATG
174980 TCGAGCTTGAATCGAGCTCAGAA
1 TCGAGCTTGAATCGAGCTCAGAA
*
175003 TCGAGCTTGAATCGAGCTCATAA
1 TCGAGCTTGAATCGAGCTCAGAA
*
175026 TAGAGCTTGAATCGAGCTCAGAA
1 TCGAGCTTGAATCGAGCTCAGAA
175049 TCGAGCTTGAATCGAGCTCAGAA
1 TCGAGCTTGAATCGAGCTCAGAA
*
175072 TCGAGCTTCAATCGAGCT
1 TCGAGCTTGAATCGAGCT
175090 TGAGTCTCGA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 82 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (23 bp):
TCGAGCTTGAATCGAGCTCAGAA
Found at i:175306 original size:10 final size:10
Alignment explanation
Indices: 175291--175347 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
175281 GTCTCCAACA
175291 TTTATGTTCG
1 TTTATGTTCG
175301 TTTATGTTCG
1 TTTATGTTCG
*
175311 TGTTCAT-TTATG
1 T-TT-ATGTT-CG
**
175323 TTCGTGTTCG
1 TTTATGTTCG
175333 TTTATGTTCG
1 TTTATGTTCG
175343 TTTAT
1 TTTAT
175348 TTATTAAATG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
10 26 0.70
11 7 0.19
12 4 0.11
ACGTcount: A:0.11, C:0.11, G:0.19, T:0.60
Consensus pattern (10 bp):
TTTATGTTCG
Found at i:175320 original size:16 final size:16
Alignment explanation
Indices: 175295--175351 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
175285 CCAACATTTA
*
175295 TGTTCGTTTATGTTCG
1 TGTTCATTTATGTTCG
175311 TGTTCATTTATGTTCG
1 TGTTCATTTATGTTCG
*
175327 TGTTCGTTTATGTTCG
1 TGTTCATTTATGTTCG
175343 T-TT-ATTTAT
1 TGTTCATTTAT
175352 TAAATGAACG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
14 5 0.13
15 2 0.05
16 31 0.82
ACGTcount: A:0.11, C:0.11, G:0.19, T:0.60
Consensus pattern (16 bp):
TGTTCATTTATGTTCG
Found at i:175340 original size:26 final size:26
Alignment explanation
Indices: 175289--175347 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
175279 GGGTCTCCAA
* *
175289 CATTTATGTTCGTTTATGTTCGTGTT
1 CATTTATGTTCGTTTACGTTCATGTT
*
175315 CATTTATGTTCGTGTT-CGTTTATGTT
1 CATTTATGTTCGT-TTACGTTCATGTT
*
175341 CGTTTAT
1 CATTTAT
175348 TTATTAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (26 bp):
CATTTATGTTCGTTTACGTTCATGTT
Found at i:178450 original size:27 final size:28
Alignment explanation
Indices: 178407--178461 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
178397 AATATTAATA
178407 TAAATAATTTGTTTTATTAATAT-AAAAAT
1 TAAATAA-TTGTTTTATTAA-ATCAAAAAT
178436 TAAATAA-TGTTTTATTAAATCAAAAA
1 TAAATAATTGTTTTATTAAATCAAAAA
178462 AATGGACCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 2 0.08
27 16 0.64
29 7 0.28
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (28 bp):
TAAATAATTGTTTTATTAAATCAAAAAT
Found at i:178462 original size:29 final size:28
Alignment explanation
Indices: 178407--178464 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
178397 AATATTAATA
*
178407 TAAATAATTTGTTTTATTAATATAAAAAT
1 TAAATAA-TTGTTTTATTAATAAAAAAAT
178436 TAAATAA-TGTTTTATTAAATCAAAAAAAT
1 TAAATAATTGTTTTATT-AAT-AAAAAAAT
178465 GGACCTACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 9 0.35
28 3 0.12
29 14 0.54
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (28 bp):
TAAATAATTGTTTTATTAATAAAAAAAT
Found at i:186058 original size:30 final size:30
Alignment explanation
Indices: 186024--186096 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
186014 CCCGAAGAAC
186024 CTATCCAAAGGTCATAAAGATCCTCGGTAA
1 CTATCCAAAGGTCATAAAGATCCTCGGTAA
*
186054 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAAAGGTCATAAAGATCCTCGGTAA
* *
186084 CTGTCCATAGGTC
1 CTATCCAAAGGTC
186097 CCGAAGAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (30 bp):
CTATCCAAAGGTCATAAAGATCCTCGGTAA
Found at i:188516 original size:2 final size:2
Alignment explanation
Indices: 188509--188564 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
188499 CTGATCACAG
188509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
188551 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
188565 CCAAACTCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:190747 original size:4 final size:4
Alignment explanation
Indices: 190738--190763 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
190728 ATATAACAAG
190738 TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
190764 TATGTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:191029 original size:30 final size:30
Alignment explanation
Indices: 190995--191067 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
190985 CCCGAAGAAC
190995 CTATCCAAAGGTCATAAAGATCCTCGGTAA
1 CTATCCAAAGGTCATAAAGATCCTCGGTAA
*
191025 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAAAGGTCATAAAGATCCTCGGTAA
* *
191055 CTTTCCATAGGTC
1 CTATCCAAAGGTC
191068 CCGAAGAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (30 bp):
CTATCCAAAGGTCATAAAGATCCTCGGTAA
Found at i:194708 original size:22 final size:22
Alignment explanation
Indices: 194678--194744 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
194668 TGTCATATGA
194678 GATT-TGTCCCGAAAGACCTAT
1 GATTATGTCCCGAAAGACCTAT
* *
194699 GATTATGTCCCGAATGACCTGT
1 GATTATGTCCCGAAAGACCTAT
* *
194721 TAATATGTCCCGAAAGACCTAT
1 GATTATGTCCCGAAAGACCTAT
194743 GA
1 GA
194745 AACCCTCGAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 4 0.11
22 34 0.89
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (22 bp):
GATTATGTCCCGAAAGACCTAT
Found at i:194873 original size:22 final size:23
Alignment explanation
Indices: 194833--194878 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 23
194823 TCATGTATTC
194833 ATATCCTTTCTCTTGTATCCACAT
1 ATATCCTTTCTCTTGTAT-CACAT
*
194857 ATAT-CTTTC-CTTTTATCACAT
1 ATATCCTTTCTCTTGTATCACAT
194878 A
1 A
194879 GTACATGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 6 0.29
23 5 0.24
24 4 0.19
ACGTcount: A:0.24, C:0.26, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATCCTTTCTCTTGTATCACAT
Found at i:195021 original size:2 final size:2
Alignment explanation
Indices: 194978--195007 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
194968 ATGCACACAC
194978 AT AT AT AT AT AT AT AT AT AT AT CAT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT A
195008 AATTATGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:196463 original size:65 final size:65
Alignment explanation
Indices: 196374--196530 Score: 226
Period size: 65 Copynumber: 2.4 Consensus size: 65
196364 TACACTAGGG
* * * *
196374 GTGCATCGGTACACTAATTACATTCGATGTTTCAAAATAGCCAGGAGTGCATCGATGCATGG-TC
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAATAGCCAAGAGTGCATCGATGCATGGCT-
196438 T
65 T
* ** *
196439 GTGCATCGGTACACAAAATGCATTCAATGTTTCAAAATATTCAAGAGTGCATTGATGCATGGCTT
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAATAGCCAAGAGTGCATCGATGCATGGCTT
196504 GTGCATCGGTACACAAAATGCATTCGA
1 GTGCATCGGTACACAAAATGCATTCGA
196531 AATGGGTATG
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
65 81 0.99
66 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (65 bp):
GTGCATCGGTACACAAAATGCATTCGATGTTTCAAAATAGCCAAGAGTGCATCGATGCATGGCTT
Found at i:204093 original size:65 final size:65
Alignment explanation
Indices: 204006--204162 Score: 199
Period size: 65 Copynumber: 2.4 Consensus size: 65
203996 TACACTAGGG
* * * * * * *
204006 GTGCATCAGTACACTAATTACATTCGATGTTTTAAAATATCCAGGAGTGCATCGATGTATGG-TC
1 GTGCATCGGTACACAAAATACATTCGATGTTTCAAAATATCCAAGAGTGCATCGATGCAAGGCT-
204070 T
65 T
* **
204071 GTGCATCGGTACACAAAATACATTTGATGTTTCAAAATATTTAAGAGTGCATCGATGCAAGGCTT
1 GTGCATCGGTACACAAAATACATTCGATGTTTCAAAATATCCAAGAGTGCATCGATGCAAGGCTT
*
204136 GTGCATCGGTACACAAAATGCATTCGA
1 GTGCATCGGTACACAAAATACATTCGA
204163 AATGGGTGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
65 78 0.99
66 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (65 bp):
GTGCATCGGTACACAAAATACATTCGATGTTTCAAAATATCCAAGAGTGCATCGATGCAAGGCTT
Found at i:208522 original size:113 final size:113
Alignment explanation
Indices: 208324--208550 Score: 445
Period size: 113 Copynumber: 2.0 Consensus size: 113
208314 CGAACCAATT
*
208324 TTTCATGTTAATCACTTGCAATCTTATCTCCATAACTTTATCAGCAGCATATTTATCAAAGGGCT
1 TTTCATGTTAATCACTTGCAATCTTATCTCCATAACTTTATCAACAGCATATTTATCAAAGGGCT
208389 CTTCCAAAATTTGCCTCCAGCTGCTGTTGCGGATCCTTAAATAGATTA
66 CTTCCAAAATTTGCCTCCAGCTGCTGTTGCGGATCCTTAAATAGATTA
208437 TTTCATGTTAATCACTTGCAATCTTATCTCCATAACTTTATCAACAGCATATTTATCAAAGGGCT
1 TTTCATGTTAATCACTTGCAATCTTATCTCCATAACTTTATCAACAGCATATTTATCAAAGGGCT
208502 CTTCCAAAATTTGCCTCCAGCTGCTGTTGCGGATCCTTAAATAGATTA
66 CTTCCAAAATTTGCCTCCAGCTGCTGTTGCGGATCCTTAAATAGATTA
208550 T
1 T
208551 GTTTGTTTGT
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (113 bp):
TTTCATGTTAATCACTTGCAATCTTATCTCCATAACTTTATCAACAGCATATTTATCAAAGGGCT
CTTCCAAAATTTGCCTCCAGCTGCTGTTGCGGATCCTTAAATAGATTA
Found at i:213374 original size:22 final size:21
Alignment explanation
Indices: 213331--213369 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
213321 ACAATCTGGT
*
213331 AATTTTAAAAAATTTATATAA
1 AATTTTAAAAAATATATATAA
213352 AATTTTAAAAAA-ATATAT
1 AATTTTAAAAAATATATAT
213370 TTAAAGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTTAAAAAATATATATAA
Found at i:217678 original size:23 final size:23
Alignment explanation
Indices: 217660--217720 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
217650 CTCATATAAA
*
217660 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
* *
217683 TGCATCGTAGTGCCGCATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
217706 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
217721 TATAATAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (23 bp):
TGCACCGTAGTGCCACATAGAAT
Found at i:217915 original size:103 final size:103
Alignment explanation
Indices: 217736--218056 Score: 606
Period size: 103 Copynumber: 3.1 Consensus size: 103
217726 TAATGTCCAT
* * *
217736 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
217801 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
217839 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
217904 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
*
217942 AAAGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
218007 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATATCCCG
218045 AAGGACCACATA
1 AAGGACCACATA
218057 GACCCTCGAC
Statistics
Matches: 213, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 213 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATATCCCG
Found at i:226547 original size:17 final size:16
Alignment explanation
Indices: 226525--226579 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
226515 CCGTGTCTCG
*
226525 ATCCGGATGTTACGGGT
1 ATCCGGATATT-CGGGT
*
226542 ATCCGG-TAATCGGGT
1 ATCCGGATATTCGGGT
*
226557 ATCCGGATTTTGCGGGT
1 ATCCGGATATT-CGGGT
226574 ATCCGG
1 ATCCGG
226580 TAATCGAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 17 0.53
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (16 bp):
ATCCGGATATTCGGGT
Found at i:226573 original size:32 final size:32
Alignment explanation
Indices: 226525--226585 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
226515 CCGTGTCTCG
226525 ATCCGGATGTTACGGGTATCCGGTAATCGGGT
1 ATCCGGATGTTACGGGTATCCGGTAATCGGGT
* *
226557 ATCCGGATTTTGCGGGTATCCGGTAATCG
1 ATCCGGATGTTACGGGTATCCGGTAATCG
226586 AGTACCCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.30
Consensus pattern (32 bp):
ATCCGGATGTTACGGGTATCCGGTAATCGGGT
Found at i:226749 original size:16 final size:15
Alignment explanation
Indices: 226723--226758 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
226713 CAAAATACAA
226723 AATATAATAATTCAT
1 AATATAATAATTCAT
226738 AATATAAATAATTCAT
1 AATAT-AATAATTCAT
*
226754 TATAT
1 AATAT
226759 TTTATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATAATAATTCAT
Found at i:230573 original size:16 final size:16
Alignment explanation
Indices: 230552--230584 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
230542 GTCGATTACG
230552 GTCGACGGTGCCAGAA
1 GTCGACGGTGCCAGAA
230568 GTCGACGGTGCCAGAA
1 GTCGACGGTGCCAGAA
230584 G
1 G
230585 GAGAGGACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.39, T:0.12
Consensus pattern (16 bp):
GTCGACGGTGCCAGAA
Found at i:231825 original size:29 final size:29
Alignment explanation
Indices: 231792--231863 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
231782 CTAAAACGGT
*
231792 TAAAACAGAAATTTAAATGAC-ATAAATAA
1 TAAAACAGAAACTTAAATGACTA-AAATAA
* *
231821 TAAAAATAGAAACTTAAGTGACTAAAATAA
1 T-AAAACAGAAACTTAAATGACTAAAATAA
231851 -AATAACAGAAACT
1 TAA-AACAGAAACT
231864 AAAGTGCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
28 2 0.06
29 10 0.28
30 23 0.64
31 1 0.03
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.22
Consensus pattern (29 bp):
TAAAACAGAAACTTAAATGACTAAAATAA
Found at i:231849 original size:30 final size:29
Alignment explanation
Indices: 231793--231886 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
231783 TAAAACGGTT
* *
231793 AAAACAGAAATTTAAATGACATAAATAATA
1 AAAACAGAAACTTAAGTGACATAAATAA-A
*
231823 AAAATAGAAACTTAAGTGAC-TAAAATAAA
1 AAAACAGAAACTTAAGTGACAT-AAATAAA
* * * *
231852 ATAACAGAAACTAAAGTGCCA-AAATTAAG
1 AAAACAGAAACTTAAGTGACATAAA-TAAA
231881 AAAACA
1 AAAACA
231887 TATATATTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
28 3 0.06
29 26 0.50
30 23 0.44
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.19
Consensus pattern (29 bp):
AAAACAGAAACTTAAGTGACATAAATAAA
Found at i:232360 original size:145 final size:141
Alignment explanation
Indices: 232014--232525 Score: 481
Period size: 145 Copynumber: 3.6 Consensus size: 141
232004 CGCCATACCG
* *
232014 CCGTCCGATCGTTCTGAAATTTT-AGTATGTTGTTCGTGTTGACATCGCGCAACTTTTGACCGTT
1 CCGTCCGATCGTCCTG-AATTTTCAGTATGTTGTTCGTGATGACATCGCGCAACTTTTGACCGTT
* * * * * * *
232078 CGGAATGTTGATTGGAGCT-TCCGATCGCCGGCGAGAGGCCAAAAACCGTCCAGAGTTGTTTTCT
65 CGGAATGTTGATCGGAGATCT-CGATCGTCGGCAAGAGGCCAAAAACCGTTC-GACTTATTTTCT
232142 CCG-ATT--TA-CCA
128 -CGAATTCCTATCCA
* * * *
232153 CCGTCCGATCGTCCTGAAATTTCAGTATGCTGTTCGTGATGACAT-GACACAACTTTTCACCGTT
1 CCGTCCGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGACATCG-CGCAACTTTTGACCGTT
* * * *
232217 TGGAATGTTGATCGGAGATCTCGATCGTTGGAAAGAGGCCAAAAACCGTTCGATTTATTTTCTCT
65 CGGAATGTTGATCGGAGATCTCGATCGTCGGCAAGAGGCCAAAAACCGTTCGACTTATTTTCTC-
232282 GATATTCCGTAGTCCA
129 GA-ATTCC-TA-TCCA
* * * * * *
232298 CCGTCTGATCGTCCTGAATTTTCAGTATGTTGTTTGTGCTAGTC-TCGCGCAACGTCTGACCGTT
1 CCGTCCGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT-GACATCGCGCAACTTTTGACCGTT
* * * * * * * *
232362 CGAAATGTTGATTGGAGATCCCGATCGTCGGCAAGAGACCAAAAATCGTTCGGCTTAGTTTCTCC
65 CGGAATGTTGATCGGAGATCTCGATCGTCGGCAAGAGGCCAAAAACCGTTCGACTTATTTTCTCG
*
232427 AA-TCC-AT-CG
130 AATTCCTATCCA
* * *
232436 CCGTCCGATCGTCCTGAATTTTCAATATGTTGTTCGTGATGGTC-TTGCGCAACTTTTGACCGTT
1 CCGTCCGATCGTCCTGAATTTTCAGTATGTTGTTCGTGAT-GACATCGCGCAACTTTTGACCGTT
** * * *
232500 CTTAATATTGATCAGAGATTTCGATC
65 CGGAATGTTGATCGGAGATCTCGATC
232526 ACCGACGAGA
Statistics
Matches: 306, Mismatches: 54, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
137 1 0.00
138 93 0.30
139 92 0.30
140 5 0.02
142 3 0.01
143 3 0.01
144 1 0.00
145 105 0.34
146 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (141 bp):
CCGTCCGATCGTCCTGAATTTTCAGTATGTTGTTCGTGATGACATCGCGCAACTTTTGACCGTTC
GGAATGTTGATCGGAGATCTCGATCGTCGGCAAGAGGCCAAAAACCGTTCGACTTATTTTCTCGA
ATTCCTATCCA
Found at i:232757 original size:3 final size:3
Alignment explanation
Indices: 232749--232792 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
232739 TTGAGGTAGG
*
232749 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
232793 TTTTTCGATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:234891 original size:15 final size:15
Alignment explanation
Indices: 234873--234920 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
234863 GGATTTCTAG
234873 AAATTGAATTCTGAA
1 AAATTGAATTCTGAA
*
234888 AAA-TGAATTACTG-G
1 AAATTGAATT-CTGAA
*
234902 AATTTGAATTCTGAA
1 AAATTGAATTCTGAA
234917 AAAT
1 AAAT
234921 AAATTACATT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (15 bp):
AAATTGAATTCTGAA
Found at i:234894 original size:14 final size:14
Alignment explanation
Indices: 234877--234925 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
234867 TTCTAGAAAT
234877 TGAATTCTGAAAAA
1 TGAATTCTGAAAAA
* **
234891 TGAATTACTGGAATT
1 TGAATT-CTGAAAAA
234906 TGAATTCTGAAAAA
1 TGAATTCTGAAAAA
*
234920 TAAATT
1 TGAATT
234926 ACATTTCTAG
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (14 bp):
TGAATTCTGAAAAA
Done.