Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008909.1 Hibiscus syriacus cultivar Beakdansim tig00112206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2327114
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 8
Found at i:1506276 original size:24 final size:26
Alignment explanation
Indices: 1506249--1506301 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 26
1506239 TTCAGTGGCG
*
1506249 AATCTATAATTT-TTTT-TTAAAAAA
1 AATCAATAATTTATTTTCTTAAAAAA
* *
1506273 AATCAATATTTTATTTTCTTAAAACA
1 AATCAATAATTTATTTTCTTAAAAAA
1506299 AAT
1 AAT
1506302 GTATGTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.42
25 4 0.17
26 10 0.42
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (26 bp):
AATCAATAATTTATTTTCTTAAAAAA
Found at i:1508561 original size:29 final size:27
Alignment explanation
Indices: 1508491--1508569 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 27
1508481 GGAGTCATAG
1508491 CCCTCAAAATTTTAAAAATTATAATTTAGA
1 CCCT-AAAATTTTAAAAA--ATAATTTAGA
*
1508521 CCCTTAAATTTTAAAAAATAATTT-GAA
1 CCCTAAAATTTTAAAAAATAATTTAG-A
1508548 TCCCTAAAACTTTTTAAAAAAT
1 -CCCTAAAA--TTTTAAAAAAT
1508570 CAGATTAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
26 1 0.02
27 8 0.19
28 7 0.16
29 12 0.28
30 15 0.35
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.37
Consensus pattern (27 bp):
CCCTAAAATTTTAAAAAATAATTTAGA
Found at i:1513701 original size:22 final size:22
Alignment explanation
Indices: 1513676--1513718 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
1513666 AAAATAGATA
* *
1513676 AAATTTATAAGATATCATATAC
1 AAATATATAAGATATAATATAC
*
1513698 AAATATATAATATATAATATA
1 AAATATATAAGATATAATATA
1513719 TAATCAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (22 bp):
AAATATATAAGATATAATATAC
Found at i:1515011 original size:39 final size:36
Alignment explanation
Indices: 1514968--1515061 Score: 84
Period size: 35 Copynumber: 2.5 Consensus size: 36
1514958 ACAAAATAAT
*
1514968 AATAACAAAAATATGAATA-ATATATATATATATAAAATA
1 AATAACAAAAATA--AATATATATAAAT-TA-ATAAAATA
* *
1515007 AATAA-AAAAGTAAATATATATAAATTAATAAATTA
1 AATAACAAAAATAAATATATATAAATTAATAAAATA
* *
1515042 AATAACGAAAAGAACATATA
1 AATAACAAAAATAA-ATATA
1515062 CACATATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
35 12 0.26
36 11 0.24
37 12 0.26
38 6 0.13
39 5 0.11
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (36 bp):
AATAACAAAAATAAATATATATAAATTAATAAAATA
Found at i:1515022 original size:12 final size:11
Alignment explanation
Indices: 1514902--1515022 Score: 50
Period size: 11 Copynumber: 10.0 Consensus size: 11
1514892 AATAGTAAGT
1514902 AAAAAT-AATA
1 AAAAATAAATA
1514912 ATAAAATATATATA
1 A-AAAATA-A-ATA
*
1514926 AAAAAGAAA-A
1 AAAAATAAATA
1514936 AGAAAATAAATAA
1 A-AAAATAAAT-A
*
1514949 AACAAATAAACA
1 AA-AAATAAATA
1514961 AAATAAT-AATAA
1 AAA-AATAAAT-A
1514973 CAAAAATATGAATA
1 -AAAAATA--AATA
* *
1514987 ATATATATATATA
1 A-A-AAATAAATA
*
1515000 TAAAATAAATA
1 AAAAATAAATA
1515011 AAAAAGTAAATA
1 AAAAA-TAAATA
1515023 TATATAAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 32
0.67 0.08 0.25
Matches are distributed among these distances:
10 3 0.04
11 27 0.32
12 19 0.23
13 22 0.26
14 6 0.07
15 7 0.08
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.22
Consensus pattern (11 bp):
AAAAATAAATA
Found at i:1515278 original size:2 final size:2
Alignment explanation
Indices: 1515271--1515305 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1515261 CTTGTGTAGA
*
1515271 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1515306 ATAATAGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:1515513 original size:2 final size:2
Alignment explanation
Indices: 1515506--1515536 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1515496 GAACATACGC
1515506 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1515537 ACAAAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1515569 original size:12 final size:11
Alignment explanation
Indices: 1515537--1515581 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
1515527 TATATATATA
1515537 ACAA-AATAAT
1 ACAAGAATAAT
* *
1515547 ATAAAAATAAT
1 ACAAGAATAAT
1515558 ACAAGCAATAAT
1 ACAAG-AATAAT
1515570 ACAAGAATAAT
1 ACAAGAATAAT
1515581 A
1 A
1515582 AAAAGAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
10 3 0.10
11 16 0.53
12 11 0.37
ACGTcount: A:0.67, C:0.09, G:0.04, T:0.20
Consensus pattern (11 bp):
ACAAGAATAAT
Found at i:1515688 original size:12 final size:12
Alignment explanation
Indices: 1515666--1515710 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
1515656 GAATAAAAGG
1515666 AAAATATAATAGT
1 AAAA-ATAATAGT
*
1515679 AAAAATAATAAT
1 AAAAATAATAGT
*
1515691 AAATATAATAGT
1 AAAAATAATAGT
*
1515703 AATAATAA
1 AAAAATAA
1515711 AAATGCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:1516321 original size:37 final size:37
Alignment explanation
Indices: 1516280--1516384 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
1516270 GTGCTTGTGG
* * *
1516280 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAAAACTCT
* *
1516317 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAAAACTCT
* *
1516354 ATCATATTTTTAGGAGTTTGAATCCTAGTAA
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAA
1516385 GACGAAAAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGTAAAACTCT
Found at i:1517440 original size:106 final size:105
Alignment explanation
Indices: 1517115--1518489 Score: 1933
Period size: 106 Copynumber: 13.0 Consensus size: 105
1517105 GTATTGTTCT
* * ** * * *
1517115 GAGTACAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGGAATCGAGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTGTTGACAA
* * * * * *
1517180 CCAACCGTCCCTTCGTTGTGAAGTTAAACTTGTGTTGTCTC
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1517221 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T-GAA-AT-TTTGTTGACAAT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTGTTGACAAC
* * *
1517281 CAGTC-G-CCTCTTCGTCGTGAAGTTGAGCTTGTGTTGCCTTG
66 CAG-CGGTCC-CTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * * * *
1517322 G-GTTCAAGATCCTTCGCTGAGAAGTTGAAATTGACTCTGAAATTAGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
* *
1517386 CTAGAGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1517427 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTGTTGACAA
*
1517492 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1517533 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
* * *
1517598 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1517639 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGTCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
1517704 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1517745 GAGTTCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTGTTGACAA
1517810 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1517851 GAGTCCAATATCCTTCATTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAGTTGTTTGTTGACAA
* * *
1517916 CTAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1517957 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
* *
1518022 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1518063 GAGTCCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTGAAATTAAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
* * *
1518128 CCAGCGGTCCATTCGTTGTGAAGTTGAACTTGCATTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1518169 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGG-AAGTTGTTTGTTGACAA
* *
1518234 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1518275 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGATTTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTGTTGACAA
1518340 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1518381 GAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-TTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGG-AAGTTGTTTGTTGACAA
* * * *
1518445 CCAGTC-GTCCCTTCGTTGTGAAGTTGACCTTGTGTTGTCTT
65 CCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
1518486 GAGT
1 GAGT
1518490 GGCACGATAT
Statistics
Matches: 1152, Mismatches: 97, Indels: 41
0.89 0.08 0.03
Matches are distributed among these distances:
99 2 0.00
100 74 0.06
101 6 0.01
102 4 0.00
104 3 0.00
105 59 0.05
106 998 0.87
107 6 0.01
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:1519325 original size:22 final size:22
Alignment explanation
Indices: 1519299--1519375 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
1519289 TTATGTTTGG
1519299 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
1519321 TCAAAGGTTTGGCATCTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
1519343 TCATAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
1519365 TCAACGGTTTG
1 TCAAAGGTTTG
1519376 ATGGGGTAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:1520031 original size:16 final size:14
Alignment explanation
Indices: 1519990--1520039 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 14
1519980 TTCTTTTTGA
1519990 TTTTTGTTCTTTCT
1 TTTTTGTTCTTTCT
1520004 TTTTT-TTC-TTCT
1 TTTTTGTTCTTTCT
1520016 TTTTTGCTTCTTTTCT
1 TTTTTG-TTC-TTTCT
1520032 TTTTTGTT
1 TTTTTGTT
1520040 TTTGCCCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 9 0.28
13 3 0.09
14 8 0.25
15 2 0.06
16 10 0.31
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (14 bp):
TTTTTGTTCTTTCT
Found at i:1524715 original size:13 final size:13
Alignment explanation
Indices: 1524662--1524728 Score: 55
Period size: 13 Copynumber: 5.1 Consensus size: 13
1524652 AGTAAGTAAG
*
1524662 AAAAACAAATAATA
1 AAAAATAAATAA-A
* *
1524676 AAATATATATAAA
1 AAAAATAAATAAA
*
1524689 AAAGAA-AAAGAAA
1 AAA-AATAAATAAA
1524702 AAAAATAAATAAA
1 AAAAATAAATAAA
* *
1524715 ACAAATAAACAAA
1 AAAAATAAATAAA
1524728 A
1 A
1524729 TATTAATAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 2 0.05
13 30 0.71
14 10 0.24
ACGTcount: A:0.79, C:0.04, G:0.03, T:0.13
Consensus pattern (13 bp):
AAAAATAAATAAA
Found at i:1525141 original size:23 final size:22
Alignment explanation
Indices: 1525115--1525180 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 22
1525105 AAAAGAAAAT
1525115 AAATATAATATAATGATAATAAA
1 AAATATAATATAAT-ATAATAAA
1525138 AAATATAGA-A-AAT-TAATAGAA
1 AAATATA-ATATAATATAATA-AA
*
1525159 AAATAT-ATATAATATTATAAA
1 AAATATAATATAATATAATAAA
1525180 A
1 A
1525181 TATAGCACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
19 1 0.03
20 6 0.16
21 14 0.38
22 7 0.19
23 8 0.22
24 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
AAATATAATATAATATAATAAA
Found at i:1525307 original size:12 final size:11
Alignment explanation
Indices: 1525275--1525319 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
1525265 TATATATATA
1525275 ACAA-AATAAT
1 ACAAGAATAAT
* *
1525285 ATAAAAATAAT
1 ACAAGAATAAT
1525296 ACAAGTAATAAT
1 ACAAG-AATAAT
1525308 ACAAGAATAAT
1 ACAAGAATAAT
1525319 A
1 A
1525320 AAAAGAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
10 3 0.10
11 16 0.53
12 11 0.37
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (11 bp):
ACAAGAATAAT
Found at i:1525366 original size:27 final size:28
Alignment explanation
Indices: 1525337--1525388 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
1525327 AGAGAAAGTA
1525337 AAAAAATATA-ATA-ATAATA-AAATAT
1 AAAAAATATACATATATAATATAAATAT
1525362 AAAAAATATACATATATAATATAAATA
1 AAAAAATATACATATATAATATAAATA
1525389 AGTAGAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.42
26 3 0.12
27 6 0.25
28 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAAAATATACATATATAATATAAATAT
Found at i:1525436 original size:24 final size:24
Alignment explanation
Indices: 1525340--1525452 Score: 95
Period size: 24 Copynumber: 5.0 Consensus size: 24
1525330 GAAAGTAAAA
*
1525340 AAATATAATAATAATAA-AAT-AT
1 AAATATAATAGTAATAATAATAAT
1525362 AAA-A-AATA-TACATATATAAT-AT
1 AAATATAATAGTA-ATA-ATAATAAT
*
1525384 AAATA-AGTAG-AATAA-AA-AGA-
1 AAATATAATAGTAATAATAATA-AT
1525404 AAATATAATAGTAATAATAATAAT
1 AAATATAATAGTAATAATAATAAT
*
1525428 AAATATAATAGTAATAATAAAAAT
1 AAATATAATAGTAATAATAATAAT
1525452 A
1 A
1525453 CAAAGAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.03
20 14 0.18
21 8 0.11
22 19 0.25
23 8 0.11
24 25 0.33
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (24 bp):
AAATATAATAGTAATAATAATAAT
Found at i:1525489 original size:55 final size:55
Alignment explanation
Indices: 1525367--1525489 Score: 130
Period size: 55 Copynumber: 2.2 Consensus size: 55
1525357 AATATAAAAA
* *
1525367 ATATACATATATAATATAAATAAGTAGAATAAAAAGAAAATATAATAGTAATAAT
1 ATATATATATATAATATAAATAAGTAAAATAAAAAGAAAATATAATAGTAATAAT
* *
1525422 A-ATAATAAATATAATAGT-AATAA-TAAAAATACAAAGAAAATA-AATA-TATATATAT
1 ATAT-ATATATATAATA-TAAATAAGT-AAAATAAAAAGAAAATATAATAGTA-ATA-AT
1525477 ATATATATATATA
1 ATATATATATATA
1525490 TATTGGTAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
53 2 0.04
54 10 0.18
55 42 0.74
56 3 0.05
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (55 bp):
ATATATATATATAATATAAATAAGTAAAATAAAAAGAAAATATAATAGTAATAAT
Found at i:1525509 original size:2 final size:2
Alignment explanation
Indices: 1525465--1525492 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1525455 AAGAAAATAA
1525465 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1525493 TGGTAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1526070 original size:37 final size:37
Alignment explanation
Indices: 1526029--1526136 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
1526019 GTGCTTGTGG
*
1526029 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTAT
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTAT
* * * * *
1526066 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTAT
* * *
1526103 ATCCTATTTTTAAGAGTTTGAATCATAGTTGAAC
1 ATCCTATTTTTAGGAGTTTAAATCATAGTAGAAC
1526137 GAAAATGTGT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCATAGTAGAACTAT
Found at i:1536217 original size:10 final size:10
Alignment explanation
Indices: 1536202--1536282 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
1536192 GTTTTTTTTT
1536202 TGTTCGTTTA
1 TGTTCGTTTA
1536212 TGTTCGTTTA
1 TGTTCGTTTA
*
1536222 TTGTGTTTGTTTA
1 ---TGTTCGTTTA
*
1536235 TGTTCATTTA
1 TGTTCGTTTA
1536245 T-TAT-G-TT-
1 TGT-TCGTTTA
* *
1536252 CGTTCGTTTG
1 TGTTCGTTTA
1536262 TGTTCGTTTA
1 TGTTCGTTTA
*
1536272 CGTTCGTTTA
1 TGTTCGTTTA
1536282 T
1 T
1536283 CATTTAAATG
Statistics
Matches: 54, Mismatches: 9, Indels: 16
0.68 0.11 0.20
Matches are distributed among these distances:
7 1 0.02
8 4 0.07
9 3 0.06
10 37 0.69
13 9 0.17
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:1536233 original size:23 final size:23
Alignment explanation
Indices: 1536202--1536255 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
1536192 GTTTTTTTTT
* *
1536202 TGTTCGTTTATGTTCGTTTATTG
1 TGTTCGTTTATGTTCATTTATTA
*
1536225 TGTTTGTTTATGTTCATTTATTA
1 TGTTCGTTTATGTTCATTTATTA
1536248 TGTTCGTT
1 TGTTCGTT
1536256 CGTTTGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.11, C:0.07, G:0.19, T:0.63
Consensus pattern (23 bp):
TGTTCGTTTATGTTCATTTATTA
Found at i:1536271 original size:37 final size:36
Alignment explanation
Indices: 1536209--1536282 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 36
1536199 TTTTGTTCGT
* *
1536209 TTATGTTCGTTTATTGTGTTTGTTTATGTTCATTTA
1 TTATGTTCGTTTATTGTGTTCGTTTACGTTCATTTA
*
1536245 TTATGTTCGTTCGT-TTGTGTTCGTTTACGTTCGTTTA
1 TTATGTTCGTT--TATTGTGTTCGTTTACGTTCATTTA
1536282 T
1 T
1536283 CATTTAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 11 0.33
37 21 0.64
38 1 0.03
ACGTcount: A:0.11, C:0.09, G:0.19, T:0.61
Consensus pattern (36 bp):
TTATGTTCGTTTATTGTGTTCGTTTACGTTCATTTA
Found at i:1538707 original size:16 final size:14
Alignment explanation
Indices: 1538670--1538717 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
1538660 TTCGGTTCGT
1538670 TTACTAAAAGA-CA
1 TTACTAAAAGATCA
*
1538683 TTGCTAAAAGATCA
1 TTACTAAAAGATCA
1538697 GCTTACTAAAAGATCAA
1 --TTACTAAAAGATC-A
1538714 TTAC
1 TTAC
1538718 CGATTGACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
15 4 0.14
16 12 0.41
17 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (14 bp):
TTACTAAAAGATCA
Found at i:1549008 original size:15 final size:16
Alignment explanation
Indices: 1548973--1549012 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
1548963 TGTGCAAATC
1548973 CGGGTACCCGGATTTG
1 CGGGTACCCGGATTTG
1548989 CGGGTACCC-GATTT-
1 CGGGTACCCGGATTTG
1549003 CAGGGTACCC
1 C-GGGTACCC
1549013 AGAACTTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.04
15 13 0.57
16 9 0.39
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.23
Consensus pattern (16 bp):
CGGGTACCCGGATTTG
Found at i:1549073 original size:17 final size:17
Alignment explanation
Indices: 1549051--1549090 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
1549041 CCGTGTCCCG
1549051 ACCCGGATGTTACGGGT
1 ACCCGGATGTTACGGGT
* *
1549068 ACCCGGATTTTGCGGGT
1 ACCCGGATGTTACGGGT
1549085 ACCCGG
1 ACCCGG
1549091 TAATCGGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (17 bp):
ACCCGGATGTTACGGGT
Found at i:1549301 original size:10 final size:9
Alignment explanation
Indices: 1549286--1549310 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1549276 ATAATTATAT
1549286 ATAAAAAAA
1 ATAAAAAAA
1549295 ATAAAAAAA
1 ATAAAAAAA
1549304 ATAAAAA
1 ATAAAAA
1549311 CTAACCGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:1553392 original size:14 final size:15
Alignment explanation
Indices: 1553296--1553398 Score: 109
Period size: 15 Copynumber: 6.5 Consensus size: 15
1553286 TAATAAGGTT
1553296 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
1553311 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
1553326 ATTTATTATAAAGTA
1 ATTTATTTTAAAATA
*
1553341 ATTTATTATAAAATATAGA
1 ATTTATT-TTAAA-AT--A
1553360 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
1553378 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
1553392 ATTTATT
1 ATTTATT
1553399 AGTATGAATT
Statistics
Matches: 75, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
14 12 0.16
15 44 0.59
16 3 0.04
17 1 0.01
18 1 0.01
19 1 0.01
20 2 0.03
21 4 0.05
22 7 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:1553417 original size:22 final size:22
Alignment explanation
Indices: 1553401--1553443 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1553391 AATTTATTAG
1553401 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
1553423 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
1553444 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:1553417 original size:32 final size:32
Alignment explanation
Indices: 1553378--1553593 Score: 265
Period size: 32 Copynumber: 7.4 Consensus size: 32
1553368 TTTTAAAATA
*
1553378 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
1553410 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
1553432 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
1553464 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
1553486 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
1553518 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
1553550 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
1553582 ATTTATTTTAAA
1 ATTTATTTTAAA
1553594 ATATAGATTG
Statistics
Matches: 160, Mismatches: 4, Indels: 40
0.78 0.02 0.20
Matches are distributed among these distances:
22 26 0.16
23 8 0.05
25 2 0.01
26 6 0.04
28 6 0.04
29 2 0.01
31 8 0.05
32 102 0.64
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:1553438 original size:69 final size:67
Alignment explanation
Indices: 1553296--1553452 Score: 237
Period size: 69 Copynumber: 2.3 Consensus size: 67
1553286 TAATAAGGTT
1553296 ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTATAAAGTAATTTATTATAAAATATAGAT
1 ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTATAAAGTAATTTATTATAAAATATAGAT
1553361 TG
66 TG
* * * *
1553363 ATTTATTTTAAAATAATTTATTTT-AAATAATTTATTAGTATGAATTGATTTATTTTAAAATATG
1 ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTA-TA--AAGTAATTTATTATAAAATATA
1553427 GATTG
63 GATTG
1553432 ATTTATTTT-AAATAATTTATT
1 ATTTATTTTAAAATAATTTATT
1553453 AGTATGAATT
Statistics
Matches: 83, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
66 13 0.16
67 26 0.31
68 12 0.14
69 32 0.39
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (67 bp):
ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTATAAAGTAATTTATTATAAAATATAGAT
TG
Found at i:1553441 original size:54 final size:54
Alignment explanation
Indices: 1553378--1553610 Score: 340
Period size: 54 Copynumber: 4.1 Consensus size: 54
1553368 TTTTAAAATA
1553378 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1553432 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
*
1553486 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTA-TTT---TAA---A--A-TATGGATTG
* * *
1553550 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1553604 ATTTATT
1 ATTTATT
1553611 ATTGTAGTTG
Statistics
Matches: 166, Mismatches: 3, Indels: 20
0.88 0.02 0.11
Matches are distributed among these distances:
54 105 0.63
55 4 0.02
57 1 0.01
58 3 0.02
60 3 0.02
61 1 0.01
63 4 0.02
64 45 0.27
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
Found at i:1553480 original size:22 final size:22
Alignment explanation
Indices: 1553455--1553497 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1553445 AATTTATTAG
1553455 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
1553477 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
1553498 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:1553656 original size:80 final size:80
Alignment explanation
Indices: 1553540--1553690 Score: 277
Period size: 80 Copynumber: 1.9 Consensus size: 80
1553530 TAATTTATTA
*
1553540 GTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATAT-AGATTG
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGA-ATTG
1553604 ATTTATTATTGTAGTT
65 ATTTATTATTGTAGTT
1553620 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGA
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGA
1553685 TTTATT
66 TTTATT
1553691 TTAAATAATT
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
80 68 0.99
81 1 0.01
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (80 bp):
GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGAATTGA
TTTATTATTGTAGTT
Found at i:1553678 original size:22 final size:22
Alignment explanation
Indices: 1553653--1553695 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1553643 AATTTATTAG
*
1553653 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
1553675 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
1553696 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:1559337 original size:14 final size:14
Alignment explanation
Indices: 1559313--1559351 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
1559303 AACAGAGTGA
1559313 TCGTTCGTTTATGT
1 TCGTTCGTTTATGT
* *
1559327 TTGTTCATTTATGT
1 TCGTTCGTTTATGT
1559341 TCGTTCGTTTA
1 TCGTTCGTTTA
1559352 CGTTATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.10, C:0.13, G:0.18, T:0.59
Consensus pattern (14 bp):
TCGTTCGTTTATGT
Found at i:1559566 original size:20 final size:20
Alignment explanation
Indices: 1559541--1559578 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1559531 TATATATATT
*
1559541 TTCATTTATGTTCGTTTACA
1 TTCATTTATGTTCATTTACA
1559561 TTCATTTATGTTCATTTA
1 TTCATTTATGTTCATTTA
1559579 TTGTGTTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.58
Consensus pattern (20 bp):
TTCATTTATGTTCATTTACA
Found at i:1559568 original size:10 final size:10
Alignment explanation
Indices: 1559541--1559579 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
1559531 TATATATATT
1559541 TTCATTTATG
1 TTCATTTATG
* **
1559551 TTCGTTTACA
1 TTCATTTATG
1559561 TTCATTTATG
1 TTCATTTATG
1559571 TTCATTTAT
1 TTCATTTAT
1559580 TGTGTTCGTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.59
Consensus pattern (10 bp):
TTCATTTATG
Found at i:1559637 original size:23 final size:23
Alignment explanation
Indices: 1559606--1559654 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
1559596 TGTTAGTTTG
*
1559606 TGTTTGTTTATTGTGCTCATTTA
1 TGTTCGTTTATTGTGCTCATTTA
* *
1559629 TGTTCGTTTATTGTGTTCGTTTA
1 TGTTCGTTTATTGTGCTCATTTA
1559652 TGT
1 TGT
1559655 CAGTTCGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.10, C:0.08, G:0.20, T:0.61
Consensus pattern (23 bp):
TGTTCGTTTATTGTGCTCATTTA
Found at i:1559662 original size:14 final size:12
Alignment explanation
Indices: 1559569--1559681 Score: 58
Period size: 13 Copynumber: 9.3 Consensus size: 12
1559559 CATTCATTTA
*
1559569 TGTTCATTTATTG
1 TGTTCGTTTA-TG
*
1559582 TGTTCGTTTATC
1 TGTTCGTTTATG
*
1559594 T-TT-GTTAGTTTG
1 TGTTCGTT--TATG
*
1559606 TGTTTGTTTATTG
1 TGTTCGTTTA-TG
* *
1559619 TGCTCATTTA--
1 TGTTCGTTTATG
1559629 TGTTCGTTTATTG
1 TGTTCGTTTA-TG
1559642 TGTTCGTTTATG
1 TGTTCGTTTATG
1559654 TCAGTTCGTTTATG
1 T--GTTCGTTTATG
*
1559668 -G-TCGTTTATT
1 TGTTCGTTTATG
1559678 TGTT
1 TGTT
1559682 TATCATTTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
10 19 0.25
11 4 0.05
12 10 0.13
13 30 0.39
14 14 0.18
ACGTcount: A:0.11, C:0.09, G:0.20, T:0.60
Consensus pattern (12 bp):
TGTTCGTTTATG
Found at i:1559675 original size:60 final size:60
Alignment explanation
Indices: 1559562--1559677 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
1559552 TCGTTTACAT
** * * *
1559562 TCATTTATGTTCATTTATTGTGTTCGTTTATCTTTGTTAGTTTGTGTTTGTTTATTGTGC
1 TCATTTATGTTCATTTATTGTGTTCGTTTATCTCAGTTAGTTTATGGTCGTTTATTGTGC
* * *
1559622 TCATTTATGTTCGTTTATTGTGTTCGTTTATGTCAGTTCGTTTATGGTCGTTTATT
1 TCATTTATGTTCATTTATTGTGTTCGTTTATCTCAGTTAGTTTATGGTCGTTTATT
1559678 TGTTTATCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.12, C:0.09, G:0.19, T:0.59
Consensus pattern (60 bp):
TCATTTATGTTCATTTATTGTGTTCGTTTATCTCAGTTAGTTTATGGTCGTTTATTGTGC
Found at i:1560647 original size:39 final size:39
Alignment explanation
Indices: 1560593--1560671 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
1560583 TTTTTAAACA
1560593 AATTTAGTTGTTTTGCGAAGACCATTTTGAGTTTATGTC
1 AATTTAGTTGTTTTGCGAAGACCATTTTGAGTTTATGTC
*
1560632 AATTTAGTTGTTTTGCTAAGACCATTTTGAGTTTATGTC
1 AATTTAGTTGTTTTGCGAAGACCATTTTGAGTTTATGTC
1560671 A
1 A
1560672 CTGACTTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.47
Consensus pattern (39 bp):
AATTTAGTTGTTTTGCGAAGACCATTTTGAGTTTATGTC
Found at i:1569706 original size:13 final size:13
Alignment explanation
Indices: 1569688--1569714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1569678 ATACATATGC
1569688 GCATATGAAGACT
1 GCATATGAAGACT
1569701 GCATATGAAGACT
1 GCATATGAAGACT
1569714 G
1 G
1569715 TTCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:1573641 original size:14 final size:14
Alignment explanation
Indices: 1573624--1573654 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1573614 CATGAGAGAC
*
1573624 AGAGATAGAGACAG
1 AGAGAAAGAGACAG
1573638 AGAGAAAGAGACAG
1 AGAGAAAGAGACAG
1573652 AGA
1 AGA
1573655 AGGCCTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.35, T:0.03
Consensus pattern (14 bp):
AGAGAAAGAGACAG
Found at i:1575289 original size:29 final size:29
Alignment explanation
Indices: 1575245--1575304 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
1575235 GTGAAGCCGT
* * *
1575245 AGGTCGCCATGTACTCCGGGCGACCAAGG
1 AGGTCGCCATGCACTCCGGACAACCAAGG
1575274 AGGTCGCCATGCACTCCGGACAACCAAGG
1 AGGTCGCCATGCACTCCGGACAACCAAGG
1575303 AG
1 AG
1575305 TGAGTGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.12
Consensus pattern (29 bp):
AGGTCGCCATGCACTCCGGACAACCAAGG
Found at i:1575475 original size:23 final size:23
Alignment explanation
Indices: 1575445--1575511 Score: 134
Period size: 23 Copynumber: 2.9 Consensus size: 23
1575435 GTGCATGCGT
1575445 TGCATCCATAGCTGGGAGATTTC
1 TGCATCCATAGCTGGGAGATTTC
1575468 TGCATCCATAGCTGGGAGATTTC
1 TGCATCCATAGCTGGGAGATTTC
1575491 TGCATCCATAGCTGGGAGATT
1 TGCATCCATAGCTGGGAGATT
1575512 ACAGCCAAGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (23 bp):
TGCATCCATAGCTGGGAGATTTC
Found at i:1575804 original size:29 final size:29
Alignment explanation
Indices: 1575771--1575854 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
1575761 GAGCAACGTT
* *
1575771 GGTCGCCGGGCGTGCATGGCAACCTACAA
1 GGTCGCCGGGAGTGCATGGCGACCTACAA
* *
1575800 GGTCGCTGGGAGTTCATGGCGACCTACAA
1 GGTCGCCGGGAGTGCATGGCGACCTACAA
* *
1575829 GGTCGCCCGGAGGGCATGGCGACCTA
1 GGTCGCCGGGAGTGCATGGCGACCTA
1575855 TATGTTGGGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.19, C:0.29, G:0.37, T:0.15
Consensus pattern (29 bp):
GGTCGCCGGGAGTGCATGGCGACCTACAA
Found at i:1576897 original size:20 final size:20
Alignment explanation
Indices: 1576872--1576944 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
1576862 GTATTGGAGC
1576872 ATGCATGGGGGAGTTGTGGG
1 ATGCATGGGGGAGTTGTGGG
**
1576892 ATGCATGTTGTGCATGG-GACGTGGG
1 ATGCATG--G-G---GGAGTTGTGGG
1576917 AATGCATGGGGGAGTTGTGGG
1 -ATGCATGGGGGAGTTGTGGG
1576938 ATGCATG
1 ATGCATG
1576945 CTGTGCATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
20 16 0.39
21 6 0.15
22 1 0.02
23 2 0.05
24 1 0.02
25 6 0.15
26 9 0.22
ACGTcount: A:0.18, C:0.08, G:0.48, T:0.26
Consensus pattern (20 bp):
ATGCATGGGGGAGTTGTGGG
Found at i:1576925 original size:46 final size:46
Alignment explanation
Indices: 1576872--1576964 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
1576862 GTATTGGAGC
*
1576872 ATGCATGGGGGAGTTGTGGGATGCATGTTGTGCATGGGACGTGGGA
1 ATGCATGGGGGAGTTGTGGGATGCATGCTGTGCATGGGACGTGGGA
1576918 ATGCATGGGGGAGTTGTGGGATGCATGCTGTGCATGGGACGTGGGA
1 ATGCATGGGGGAGTTGTGGGATGCATGCTGTGCATGGGACGTGGGA
1576964 A
1 A
1576965 CTGTGCATGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.18, C:0.10, G:0.47, T:0.25
Consensus pattern (46 bp):
ATGCATGGGGGAGTTGTGGGATGCATGCTGTGCATGGGACGTGGGA
Found at i:1577498 original size:21 final size:21
Alignment explanation
Indices: 1577473--1577516 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1577463 AATCTAGTTA
1577473 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
1577494 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
1577515 AT
1 AT
1577517 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:1577526 original size:28 final size:30
Alignment explanation
Indices: 1577493--1577555 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
1577483 TAGTATAAAT
*
1577493 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
1577521 TATTAGTTTATTAGTTTAAGTTATATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
1577551 TATTA
1 TATTA
1577556 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.59
29 1 0.03
30 12 0.38
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (30 bp):
TATTAGTTTATTAGTTTAAGTTATATATTA
Found at i:1578103 original size:20 final size:21
Alignment explanation
Indices: 1578059--1578103 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
1578049 AAATATTGTG
**
1578059 TTTAAAAATATTTAGTGTTGT
1 TTTAAAAATATTTAGTGTTAA
*
1578080 TTTAAAAATATTTTGT-TTAA
1 TTTAAAAATATTTAGTGTTAA
1578100 TTTA
1 TTTA
1578104 CATTGTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
TTTAAAAATATTTAGTGTTAA
Found at i:1578312 original size:20 final size:21
Alignment explanation
Indices: 1578273--1578317 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
1578263 AATCATTATT
* *
1578273 ATTAGTAATAATTACTAAATG
1 ATTAGTAATAAATACTAAATC
*
1578294 ATTAGTATTAAAT-CTAAATC
1 ATTAGTAATAAATACTAAATC
1578314 ATTA
1 ATTA
1578318 AATATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTAGTAATAAATACTAAATC
Found at i:1578393 original size:26 final size:25
Alignment explanation
Indices: 1578364--1578422 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
1578354 AAATCATATT
*
1578364 ATTATTAAATCATTAAATATCAAATC
1 ATTATTAAAT-AGTAAATATCAAATC
*
1578390 ATTAGATT-AATAGTAATTATCAAATC
1 ATT--ATTAAATAGTAAATATCAAATC
1578416 ATTATTA
1 ATTATTA
1578423 GGTTTATTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
24 3 0.11
26 19 0.68
27 3 0.11
28 3 0.11
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.41
Consensus pattern (25 bp):
ATTATTAAATAGTAAATATCAAATC
Found at i:1581339 original size:26 final size:26
Alignment explanation
Indices: 1581310--1581488 Score: 162
Period size: 26 Copynumber: 7.2 Consensus size: 26
1581300 TTTGATGATT
1581310 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
1581336 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
1581362 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
1581388 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * *
1581410 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
1581434 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
* * *
1581460 TAATAATGATTTTATAATAATTATT-
1 TAGTAATGATTTGATAATAATCATTA
1581485 TAGT
1 TAGT
1581489 TATTATTTAG
Statistics
Matches: 130, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
19 1 0.01
20 5 0.04
22 3 0.02
23 11 0.08
24 9 0.07
25 12 0.09
26 83 0.64
27 6 0.05
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (26 bp):
TAGTAATGATTTGATAATAATCATTA
Found at i:1581477 original size:124 final size:123
Alignment explanation
Indices: 1581255--1581524 Score: 445
Period size: 124 Copynumber: 2.2 Consensus size: 123
1581245 ATGTATTTAT
1581255 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
*
1581320 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
66 TTGATAATAATCATTATAATAATGATTTGATAATAATCATT-TAATAATGATTTAGTAA
1581379 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
* * * * *
1581444 TTGATAATAATCATTATAATAATGATTTTATAATAATTATTTAGTTATTATTTAGTAA
66 TTGATAATAATCATTATAATAATGATTTGATAATAATCATTTAATAATGATTTAGTAA
* *
1581502 TTAT--TTATAATAATGATTTAATA
1 TAATCATTATAAAAATGATTTAATA
1581525 CTAATGATTT
Statistics
Matches: 138, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
121 18 0.13
123 17 0.12
124 103 0.75
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (123 bp):
TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
TTGATAATAATCATTATAATAATGATTTGATAATAATCATTTAATAATGATTTAGTAA
Found at i:1581531 original size:14 final size:14
Alignment explanation
Indices: 1581313--1581540 Score: 105
Period size: 14 Copynumber: 17.1 Consensus size: 14
1581303 GATGATTTAG
*
1581313 TAATGATTTGATAA
1 TAATGATTTAATAA
* *
1581327 TAATCA-TT-ATAG
1 TAATGATTTAATAA
*
1581339 TAATGATTTGATAA
1 TAATGATTTAATAA
*
1581353 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
1581365 TAATGATTTAGTAA
1 TAATGATTTAATAA
*
1581379 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
1581391 AAATGA-TT--TAA
1 TAATGATTTAATAA
*
1581402 TAATGATTTAAATATT
1 TAATGATTT-AATA-A
*
1581418 TAATGATTTGATGATTTAG
1 TAATGATTT-A--A--TAA
*
1581437 TAATGATTTGATAA
1 TAATGATTTAATAA
*
1581451 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
1581463 TAATGATTTTATAA
1 TAATGATTTAATAA
* *
1581477 TAATTATTTAGT--
1 TAATGATTTAATAA
* *
1581489 T-ATTATTTAGTAA
1 TAATGATTTAATAA
1581502 T--T-ATTT-ATAA
1 TAATGATTTAATAA
*
1581512 TAATGATTTAATAC
1 TAATGATTTAATAA
1581526 TAATGATTTAATAA
1 TAATGATTTAATAA
1581540 T
1 T
1581541 TATTACTAAT
Statistics
Matches: 168, Mismatches: 25, Indels: 42
0.71 0.11 0.18
Matches are distributed among these distances:
10 4 0.02
11 22 0.13
12 40 0.24
13 19 0.11
14 58 0.35
15 2 0.01
16 11 0.07
18 1 0.01
19 9 0.05
20 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:1581563 original size:38 final size:38
Alignment explanation
Indices: 1581493--1581566 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
1581483 TTTAGTTATT
* **
1581493 ATTTAGTAATTATTTATAATAATGATTTAATACTAATG
1 ATTTAATAATTATTTATAATAATGATAGAATACTAATG
*
1581531 ATTTAATAATTA-TTACTAATAATTATAGAATACTAA
1 ATTTAATAATTATTTA-TAATAATGATAGAATACTAA
1581567 CAAATGAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.10
38 28 0.90
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (38 bp):
ATTTAATAATTATTTATAATAATGATAGAATACTAATG
Found at i:1581773 original size:17 final size:17
Alignment explanation
Indices: 1581748--1581780 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1581738 ACTAAATATT
*
1581748 TAATTATTTGATACTAG
1 TAATGATTTGATACTAG
1581765 TAATGATTTGATACTA
1 TAATGATTTGATACTA
1581781 AAAATCATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
TAATGATTTGATACTAG
Found at i:1581773 original size:25 final size:23
Alignment explanation
Indices: 1581694--1581773 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 23
1581684 GATTTATTGT
1581694 TAATATTTAATTATTTGATAC--
1 TAATATTTAATTATTTGATACTA
* *
1581715 TAATGATTTAAAATAGTTGATTTACTA
1 TAAT-ATTT-AATTATTTGA--TACTA
1581742 -AATATTTAATTATTTGATACTA
1 TAATATTTAATTATTTGATACTA
1581764 GTAATGATTT
1 -TAAT-ATTT
1581774 GATACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 4 0.09
22 9 0.20
23 8 0.17
24 11 0.24
25 11 0.24
26 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.49
Consensus pattern (23 bp):
TAATATTTAATTATTTGATACTA
Found at i:1583953 original size:15 final size:14
Alignment explanation
Indices: 1583930--1583960 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
1583920 TACAACACTA
1583930 AACTTTAATATAAT
1 AACTTTAATATAAT
1583944 AACTTATAATATAAT
1 AACTT-TAATATAAT
1583959 AA
1 AA
1583961 ACTAATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTAATATAAT
Found at i:1583968 original size:16 final size:16
Alignment explanation
Indices: 1583935--1583981 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
1583925 CACTAAACTT
*
1583935 TAATATAAT-AACTTA
1 TAATATAATAAACTAA
1583950 TAATATAATAAACTAA
1 TAATATAATAAACTAA
*
1583966 TAA-ACTAACAAACTAA
1 TAATA-TAATAAACTAA
1583982 ACTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (16 bp):
TAATATAATAAACTAA
Found at i:1584102 original size:32 final size:34
Alignment explanation
Indices: 1584022--1584103 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
1584012 CTAAACCCTT
*
1584022 AAAC-AACTAATAAAATATTCTTTTATATAACTA
1 AAACTAACTAATAAACTATTCTTTTATATAACTA
1584055 AAACTAACTAATAAACTATT-TTTTCATTATAA-T-
1 AAACTAACTAATAAACTATTCTTTT-A-TATAACTA
*
1584088 ATACT-ACTAATAAACT
1 AAACTAACTAATAAACT
1584104 TACTAACTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
32 11 0.25
33 12 0.27
34 16 0.36
35 5 0.11
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (34 bp):
AAACTAACTAATAAACTATTCTTTTATATAACTA
Found at i:1584201 original size:44 final size:43
Alignment explanation
Indices: 1584152--1584248 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 43
1584142 AAATATAACT
*
1584152 TAACTAT-TTAACTAACACAAACTAATTAAATAATTTTTT-TTATA
1 TAACTATATTAAC-AA-ACAAACTAATT-AATAATTTTTTACTATA
*
1584196 TAACTAACTATTAACAAACAAACTAATTAATTATTTTTTAACTATA
1 TAACT-A-TATTAACAAACAAACTAATTAATAATTTTTT-ACTATA
1584242 TAACTAT
1 TAACTAT
1584249 CAAACATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
44 16 0.35
45 13 0.28
46 12 0.26
47 5 0.11
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (43 bp):
TAACTATATTAACAAACAAACTAATTAATAATTTTTTACTATA
Found at i:1584214 original size:41 final size:42
Alignment explanation
Indices: 1584151--1584275 Score: 116
Period size: 41 Copynumber: 3.0 Consensus size: 42
1584141 CAAATATAAC
* *
1584151 TTAACTATTTAACTA--ACACAAACTAATTAAATAATTTTTT
1 TTAACTATATAACTATCAAACAAACTAATTAAATAATTTTTT
* * * *
1584191 TT-A-TATAACTAACTAT-TAACAAACAAACTAATTAATTATTTT
1 TTAACTAT-A-TAACTATCAAACAAACTAATTAAATAATT-TTTT
1584233 TTAACTATATAACTATCAAACATATACTAATTAAATAATTTTT
1 TTAACTATATAACTATCAAACA-A-ACTAATTAAATAATTTTT
1584276 AATTTATGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
38 3 0.05
39 1 0.02
40 8 0.12
41 16 0.24
42 13 0.20
43 6 0.09
44 7 0.11
45 12 0.18
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (42 bp):
TTAACTATATAACTATCAAACAAACTAATTAAATAATTTTTT
Found at i:1584303 original size:41 final size:40
Alignment explanation
Indices: 1584165--1584303 Score: 93
Period size: 41 Copynumber: 3.3 Consensus size: 40
1584155 CTATTTAACT
* *
1584165 AACACAAACTAATTAAATAATTTTTTTTA-TATAACTAACTATTA
1 AACATAAACTAATTAAATAA--TTTTTAACTAT-A-TAACTA-TA
* * * *
1584209 ACAAACAAACTAATTAATTATTTTTTAACTATATAACTATCA
1 A-ACATAAACTAATTAAATAATTTTTAACTATATAACTAT-A
* * *
1584251 AACATATACTAATTAAATAATTTTTAATTTATGTATACTAT-
1 AACATAAACTAATTAAATAATTTTTAA-CTATATA-ACTATA
*
1584292 AACTTAAACTAA
1 AACATAAACTAA
1584304 CAATCATATA
Statistics
Matches: 77, Mismatches: 13, Indels: 13
0.75 0.13 0.13
Matches are distributed among these distances:
41 32 0.42
42 13 0.17
43 12 0.16
44 4 0.05
45 16 0.21
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (40 bp):
AACATAAACTAATTAAATAATTTTTAACTATATAACTATA
Found at i:1584867 original size:29 final size:29
Alignment explanation
Indices: 1584823--1584927 Score: 176
Period size: 29 Copynumber: 3.6 Consensus size: 29
1584813 AGGATTACAT
*
1584823 GGGACTACATGTCGACCTACAAGGTCGCC
1 GGGACTACATGGCGACCTACAAGGTCGCC
1584852 GGGACTACATGGCGACCTACAAGGTCGCC
1 GGGACTACATGGCGACCTACAAGGTCGCC
1584881 GGGACTACATGGCGACCTACAAGGTCGCC
1 GGGACTACATGGCGACCTACAAGGTCGCC
*
1584910 TAGG-CTACATGGCGACCT
1 -GGGACTACATGGCGACCT
1584928 CTCTATTGGC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 71 0.97
30 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (29 bp):
GGGACTACATGGCGACCTACAAGGTCGCC
Found at i:1584978 original size:28 final size:28
Alignment explanation
Indices: 1584946--1585002 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
1584936 GCTCGTATGA
* *
1584946 CTCGTCTAAGCCTGCATGGCGACCTCTC
1 CTCGTATAAGACTGCATGGCGACCTCTC
*
1584974 CTCGTATAAGATTGCATGGCGACCTCTC
1 CTCGTATAAGACTGCATGGCGACCTCTC
1585002 C
1 C
1585003 ATTGGCTCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.18, C:0.35, G:0.21, T:0.26
Consensus pattern (28 bp):
CTCGTATAAGACTGCATGGCGACCTCTC
Found at i:1585034 original size:20 final size:20
Alignment explanation
Indices: 1585005--1585043 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1584995 ACCTCTCCAT
1585005 TGGCTCGTATGGCTCGTATA
1 TGGCTCGTATGGCTCGTATA
*
1585025 TGGCTTGTATGGCTCGTAT
1 TGGCTCGTATGGCTCGTAT
1585044 GTCACCCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.18, G:0.31, T:0.38
Consensus pattern (20 bp):
TGGCTCGTATGGCTCGTATA
Found at i:1585057 original size:21 final size:21
Alignment explanation
Indices: 1585031--1585077 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
1585021 TATATGGCTT
1585031 GTATGGCTCGTATGTCACCCC
1 GTATGGCTCGTATGTCACCCC
1585052 GTATGGCTCGTATGTCACCCC
1 GTATGGCTCGTATGTCACCCC
1585073 GTATG
1 GTATG
1585078 TCGCCTGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.15, C:0.30, G:0.26, T:0.30
Consensus pattern (21 bp):
GTATGGCTCGTATGTCACCCC
Found at i:1585063 original size:9 final size:9
Alignment explanation
Indices: 1585005--1585044 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
1584995 ACCTCTCCAT
1585005 TGGCTCGTA
1 TGGCTCGTA
1585014 TGGCTCGTATA
1 TGGCTCG--TA
*
1585025 TGGCTTGTA
1 TGGCTCGTA
1585034 TGGCTCGTA
1 TGGCTCGTA
1585043 TG
1 TG
1585045 TCACCCCGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 19 0.70
11 8 0.30
ACGTcount: A:0.12, C:0.17, G:0.33, T:0.38
Consensus pattern (9 bp):
TGGCTCGTA
Found at i:1598291 original size:46 final size:46
Alignment explanation
Indices: 1598234--1598325 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
1598224 TTTAAATATT
1598234 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1598280 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1598326 GTGACCTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (46 bp):
TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
Found at i:1598550 original size:46 final size:46
Alignment explanation
Indices: 1598493--1598584 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
1598483 TTTAAATATT
1598493 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
*
1598539 TAACCATTGAAATTTTGATTATTGTTAGTGATGAAATTAAATAAAA
1 TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
1598585 GTGACCTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.38
Consensus pattern (46 bp):
TAACCATTGAAATTTTGACTATTGTTAGTGATGAAATTAAATAAAA
Found at i:1598577 original size:259 final size:259
Alignment explanation
Indices: 1598118--1598638 Score: 1024
Period size: 259 Copynumber: 2.0 Consensus size: 259
1598108 TTTGATTATC
1598118 TTTATTTTTATTTAATTAGATTGTGGTTATGTTCGTTTGTATTTAATTAAAATGTGATAATGCAT
1 TTTATTTTTATTTAATTAGATTGTGGTTATGTTCGTTTGTATTTAATTAAAATGTGATAATGCAT
1598183 GTTTGTATTTAATTAAAATGCAATCATTTACCTTATCGCCTTTTAAATATTTAACCATTGAAATT
66 GTTTGTATTTAATTAAAATGCAATCATTTACCTTATCGCCTTTTAAATATTTAACCATTGAAATT
1598248 TTGACTATTGTTAGTGATGAAATTAAATAAAATAACCATTGAAATTTTGACTATTGTTAGTGATG
131 TTGACTATTGTTAGTGATGAAATTAAATAAAATAACCATTGAAATTTTGACTATTGTTAGTGATG
1598313 AAATTAAATAAAAGTGACCTTATCTTAATTAAATAAAAGTGAAATTGATCAAATATTATATATA
196 AAATTAAATAAAAGTGACCTTATCTTAATTAAATAAAAGTGAAATTGATCAAATATTATATATA
1598377 TTTATTTTTATTTAATTAGATTGTGGTTATGTTCGTTTGTATTTAATTAAAATGTGATAATGCAT
1 TTTATTTTTATTTAATTAGATTGTGGTTATGTTCGTTTGTATTTAATTAAAATGTGATAATGCAT
1598442 GTTTGTATTTAATTAAAATGCAATCATTTACCTTATCGCCTTTTAAATATTTAACCATTGAAATT
66 GTTTGTATTTAATTAAAATGCAATCATTTACCTTATCGCCTTTTAAATATTTAACCATTGAAATT
*
1598507 TTGACTATTGTTAGTGATGAAATTAAATAAAATAACCATTGAAATTTTGATTATTGTTAGTGATG
131 TTGACTATTGTTAGTGATGAAATTAAATAAAATAACCATTGAAATTTTGACTATTGTTAGTGATG
*
1598572 AAATTAAATAAAAGTGACCTTATCTTAATTAAATAAAAGTGAAATTGATCAAATATTATGTATA
196 AAATTAAATAAAAGTGACCTTATCTTAATTAAATAAAAGTGAAATTGATCAAATATTATATATA
1598636 TTT
1 TTT
1598639 TTAAATTTAG
Statistics
Matches: 260, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
259 260 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (259 bp):
TTTATTTTTATTTAATTAGATTGTGGTTATGTTCGTTTGTATTTAATTAAAATGTGATAATGCAT
GTTTGTATTTAATTAAAATGCAATCATTTACCTTATCGCCTTTTAAATATTTAACCATTGAAATT
TTGACTATTGTTAGTGATGAAATTAAATAAAATAACCATTGAAATTTTGACTATTGTTAGTGATG
AAATTAAATAAAAGTGACCTTATCTTAATTAAATAAAAGTGAAATTGATCAAATATTATATATA
Found at i:1600765 original size:25 final size:26
Alignment explanation
Indices: 1600701--1600773 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
1600691 ATTTTGTTTT
*
1600701 TCGACTCATCACTTATTAAAATTTTAC
1 TCGACTCAT-GCTTATTAAAATTTTAC
1600728 TCGGACTCATGCTT-TTAAAATTTTAC
1 TC-GACTCATGCTTATTAAAATTTTAC
*
1600754 TCGACTCATGCTTGTTAAAA
1 TCGACTCATGCTTATTAAAA
1600774 AAATCTTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 11 0.26
26 20 0.47
27 5 0.12
28 7 0.16
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (26 bp):
TCGACTCATGCTTATTAAAATTTTAC
Found at i:1601254 original size:26 final size:26
Alignment explanation
Indices: 1601225--1601278 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
1601215 TTGTTAACTT
* * *
1601225 TACTCAAGTCATCTTATTATAATCTC
1 TACTCAAGTCAGCTCATTAAAATCTC
*
1601251 TACTCAATTCAGCTCATTAAAATCTC
1 TACTCAAGTCAGCTCATTAAAATCTC
1601277 TA
1 TA
1601279 GTCGAATTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (26 bp):
TACTCAAGTCAGCTCATTAAAATCTC
Found at i:1601320 original size:31 final size:32
Alignment explanation
Indices: 1601280--1601352 Score: 130
Period size: 31 Copynumber: 2.3 Consensus size: 32
1601270 AAATCTCTAG
*
1601280 TCGAATTTGAATTCATTCAAATTGAACTTTTA
1 TCGAATTTGAATTCATTCAAATCGAACTTTTA
1601312 T-GAATTTGAATTCATTCAAATCGAACTTTTA
1 TCGAATTTGAATTCATTCAAATCGAACTTTTA
1601343 TCGAATTTGA
1 TCGAATTTGA
1601353 CCGACTCGAG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 30 0.77
32 9 0.23
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42
Consensus pattern (32 bp):
TCGAATTTGAATTCATTCAAATCGAACTTTTA
Found at i:1604860 original size:15 final size:15
Alignment explanation
Indices: 1604840--1604890 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
1604830 AGATGTGATT
1604840 GGTGGTGAGGATGCA
1 GGTGGTGAGGATGCA
1604855 GGTGGTGAGGATGCA
1 GGTGGTGAGGATGCA
*
1604870 AGTGGTGAGGATGCA
1 GGTGGTGAGGATGCA
1604885 GGTGGT
1 GGTGGT
1604891 TTTGGTTGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.20, C:0.06, G:0.53, T:0.22
Consensus pattern (15 bp):
GGTGGTGAGGATGCA
Found at i:1607382 original size:2 final size:2
Alignment explanation
Indices: 1607375--1607401 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1607365 ACTCGATTAT
1607375 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1607402 TTAGGGTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1609699 original size:12 final size:12
Alignment explanation
Indices: 1609682--1609714 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1609672 GCGAACAAGA
1609682 TCATTTATC-GAC
1 TCATTTATCAG-C
1609694 TCATTTATCAGC
1 TCATTTATCAGC
1609706 TCATTTATC
1 TCATTTATC
1609715 CGGTTCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.95
13 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.45
Consensus pattern (12 bp):
TCATTTATCAGC
Found at i:1613494 original size:2 final size:2
Alignment explanation
Indices: 1613489--1613529 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1613479 ATATAGTGTG
1613489 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1613530 TAAATCTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1624049 original size:31 final size:31
Alignment explanation
Indices: 1624013--1624073 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
1624003 TTATACACTA
*
1624013 AGTCATCCAATTAGTAGTAAGATTATAAATT
1 AGTCATCCAATTAGTAATAAGATTATAAATT
* *
1624044 AGTCATCTAATTATTAATAAGATTATAAAT
1 AGTCATCCAATTAGTAATAAGATTATAAAT
1624074 ATGTCACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (31 bp):
AGTCATCCAATTAGTAATAAGATTATAAATT
Found at i:1625216 original size:17 final size:16
Alignment explanation
Indices: 1625181--1625230 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
1625171 ATATATTAAA
1625181 TATAAAAATATAAATTT
1 TATAAAAATA-AAATTT
*
1625198 TATAAAAATAAACTATT
1 TATAAAAATAAAAT-TT
1625215 TATTATAAAATAAAAT
1 TA-TA-AAAATAAAAT
1625231 ACGTGTATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 3 0.11
17 14 0.50
18 2 0.07
19 9 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
TATAAAAATAAAATTT
Found at i:1628143 original size:6 final size:6
Alignment explanation
Indices: 1628130--1628170 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
1628120 ATGAGAGGAC
1628130 GAGGGA GAGAGAGA GAGGGA GAGGGA GAGGGA GAGGGA GAG
1 GAGGGA GAG-G-GA GAGGGA GAGGGA GAGGGA GAGGGA GAG
1628171 AATGGGAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:1631091 original size:229 final size:227
Alignment explanation
Indices: 1630686--1631134 Score: 785
Period size: 229 Copynumber: 2.0 Consensus size: 227
1630676 GTAAATTATC
* * *
1630686 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
1630751 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
1630816 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTT
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAA-TT
1630880 GAAACATAAATTACATAACTTTCAAAAAAGTATA
195 GAAACATAAATTACATAACTTT-AAAAAAGTATA
*
1630914 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
1630979 TTAATATTGTTAAATTT-AAATGCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAAT
65 TTAATATTGTTAAATTTAAAAT-CTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAAT
*
1631043 TTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
129 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
1631108 TGAAACATAAATTACATAACTTTAAAA
194 TGAAACATAAATTACATAACTTTAAAA
1631135 GCAGTTTTAA
Statistics
Matches: 211, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
228 44 0.21
229 164 0.78
230 3 0.01
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:1631223 original size:20 final size:19
Alignment explanation
Indices: 1631200--1631245 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
1631190 CGATATACCA
1631200 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
1631220 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
1631240 GGTAAA
1 GGTAAA
1631246 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:1631389 original size:20 final size:19
Alignment explanation
Indices: 1631366--1631412 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
1631356 CGATATAACA
*
1631366 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
1631386 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
1631406 GGTAAAA
1 GGTAAAA
1631413 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:1633756 original size:33 final size:33
Alignment explanation
Indices: 1633714--1633779 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1633704 AAATAGATGG
*
1633714 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
1633747 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
1633780 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:1635614 original size:19 final size:19
Alignment explanation
Indices: 1635570--1635613 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
1635560 AATGTCGAGT
1635570 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
1635589 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
1635608 T-ATTTT
1 TAATTTT
1635614 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:1636489 original size:198 final size:199
Alignment explanation
Indices: 1635696--1637314 Score: 3030
Period size: 199 Copynumber: 8.1 Consensus size: 199
1635686 TTAAGGGTCA
*
1635696 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
*
1635761 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCAAAAAGTATAAT
66 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1635826 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1635891 TAATG
195 TAATG
*
1635896 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
*
1635961 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1636026 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1636091 AATG
196 AATG
1636095 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636160 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1636225 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1636290 AATG
196 AATG
1636294 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636359 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1636424 TAATATGTAATTTTT-AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1636488 AATG
196 AATG
* *
1636492 TGTCGACACTAATATATTTTGTGTCGATATTTTTTTTCCAGAATGAATTATAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636557 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1636622 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1636687 AATG
196 AATG
*
1636691 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
*
1636755 AATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1636819 TAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1636884 AATG
196 AATG
1636888 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636953 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1637018 GTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
130 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1637083 TAATG
195 TAATG
*
1637088 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATT-AAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1637152 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
1637217 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
1637282 AATG
196 AATG
*
1637286 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
1637315 CAAATTTAAA
Statistics
Matches: 1390, Mismatches: 25, Indels: 10
0.98 0.02 0.01
Matches are distributed among these distances:
197 138 0.10
198 442 0.32
199 567 0.41
200 243 0.17
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (199 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATG
Found at i:1636644 original size:397 final size:399
Alignment explanation
Indices: 1635696--1637314 Score: 3034
Period size: 397 Copynumber: 4.1 Consensus size: 399
1635686 TTAAGGGTCA
*
1635696 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
*
1635761 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCAAAAAGTATAAT
66 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1635826 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1635891 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
196 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
*
1635956 GCATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
261 GCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
1636021 TAATGTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
326 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
1636086 TAAATAATG
391 TAAATAATG
1636095 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636160 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1636224 GTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1636289 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
196 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
*
1636354 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
261 GCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
1636419 TAATGTAATATGTAATTTTT-AATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
326 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
1636483 TAAATAATG
391 TAAATAATG
* *
1636492 TGTCGACACTAATATATTTTGTGTCGATATTTTTTTTCCAGAATGAATTATAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636557 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1636621 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
1636686 TAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGT
196 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
*
1636750 GCATCAATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
261 GCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
1636814 TAATGTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
326 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
1636879 TAAATAATG
391 TAAATAATG
1636888 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
1636953 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
1637018 GTAATCTGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
*
1637083 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATT-AAAACAAGGT
196 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
*
1637147 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
261 GCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
1637212 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
326 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
1637277 TAAATAATG
391 TAAATAATG
*
1637286 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
1637315 CAAATTTAAA
Statistics
Matches: 1190, Mismatches: 26, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
395 56 0.05
396 192 0.16
397 450 0.38
398 406 0.34
399 86 0.07
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (399 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCACC
CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGT
GCACCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
TAAATAATG
Found at i:1638795 original size:18 final size:18
Alignment explanation
Indices: 1638772--1638839 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
1638762 ATCGGTCGCA
1638772 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
1638790 GAAGATGACGACGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
1638811 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
1638832 GAAGATGA
1 GAAGATGA
1638840 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.10, G:0.35, T:0.18
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:1638796 original size:6 final size:6
Alignment explanation
Indices: 1638772--1638869 Score: 61
Period size: 6 Copynumber: 16.3 Consensus size: 6
1638762 ATCGGTCGCA
* * * * * * *
1638772 GAAGAT GAAGCT GACGAT GAAGAT GACGAC GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
1638820 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
1638868 GA
1 GA
1638870 TGATCCAAAC
Statistics
Matches: 72, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 72 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.20
Consensus pattern (6 bp):
GAAGAT
Found at i:1638804 original size:15 final size:15
Alignment explanation
Indices: 1638783--1638872 Score: 114
Period size: 15 Copynumber: 6.2 Consensus size: 15
1638773 AAGATGAAGC
1638783 TGACGATGAAGATGA
1 TGACGATGAAGATGA
* *
1638798 CGACGATGATGATGA
1 TGACGATGAAGATGA
*
1638813 TGACGATGAAGCTG-
1 TGACGATGAAGATGA
1638827 -G-CGATGAAGATGA
1 TGACGATGAAGATGA
*
1638840 TGACGATGATGATGA
1 TGACGATGAAGATGA
*
1638855 TGATGATGAAGATGA
1 TGACGATGAAGATGA
1638870 TGA
1 TGA
1638873 TCCAAACAAG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.16
13 1 0.02
14 1 0.02
15 51 0.81
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.22
Consensus pattern (15 bp):
TGACGATGAAGATGA
Found at i:1638808 original size:3 final size:3
Alignment explanation
Indices: 1638787--1638873 Score: 75
Period size: 3 Copynumber: 29.0 Consensus size: 3
1638777 TGAAGCTGAC
* * * * * * ** *
1638787 GAT GAA GAT GAC GAC GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
1638835 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1638874 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.07, G:0.34, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:1638822 original size:42 final size:42
Alignment explanation
Indices: 1638775--1638865 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
1638765 GGTCGCAGAA
1638775 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
1638817 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
1638859 GATGAAG
1 GATGAAG
1638866 ATGATGATCC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:1640652 original size:184 final size:184
Alignment explanation
Indices: 1640343--1640830 Score: 904
Period size: 184 Copynumber: 2.7 Consensus size: 184
1640333 CTTTCAACAT
**
1640343 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1640408 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
1640473 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATTGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
1640527 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1640592 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
* *
1640657 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTATACATCGGAACCCATA
131 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
1640711 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
1640776 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
1640831 CCATTTAAAA
Statistics
Matches: 296, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 296 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:1642751 original size:23 final size:23
Alignment explanation
Indices: 1642720--1642783 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
1642710 ATAGGTAAAC
*
1642720 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1642743 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1642766 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
1642784 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1642790 original size:23 final size:23
Alignment explanation
Indices: 1642720--1642792 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
1642710 ATAGGTAAAC
* **
1642720 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
1642743 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
1642766 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
1642789 ATAT
1 ATAT
1642793 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:1643178 original size:23 final size:23
Alignment explanation
Indices: 1643147--1643210 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
1643137 ATAGGTAAAC
*
1643147 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
1643170 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
1643193 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
1643211 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:1643217 original size:23 final size:23
Alignment explanation
Indices: 1643147--1643219 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
1643137 ATAGGTAAAC
* **
1643147 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
1643170 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
1643193 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
1643216 ATAT
1 ATAT
1643220 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:1643457 original size:427 final size:428
Alignment explanation
Indices: 1642621--1643637 Score: 2009
Period size: 427 Copynumber: 2.4 Consensus size: 428
1642611 AATTCGCAGT
1642621 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1642686 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1642751 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
1642816 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
1642881 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
1642946 AAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
326 AAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
1643011 GAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 GAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1643049 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1643113 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1643178 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
*
1643243 AAAAGTGTCCATATTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
1643308 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
1643373 AAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
326 AAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
1643438 GAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 GAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
1643476 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
1643541 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
1643606 TAATAGGTATCGTTTATATAATGTAATAGGTA
131 TAATAGGTATCGTTTATATAATGTAATAGGTA
1643638 TCTATCTCGC
Statistics
Matches: 586, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
427 426 0.73
428 160 0.27
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (428 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATAAAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
AAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCAAAT
GAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:1643638 original size:23 final size:23
Alignment explanation
Indices: 1643575--1643639 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
1643565 ATAGGTAAAC
* *
1643575 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
**
1643598 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCCCTT
1643621 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
1643640 TATCTCGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:1643864 original size:18 final size:18
Alignment explanation
Indices: 1643843--1643879 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1643833 GTAATTGGAG
1643843 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
1643861 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
1643879 T
1 T
1643880 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:1643887 original size:24 final size:24
Alignment explanation
Indices: 1643835--1643881 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1643825 TTTCATATGT
* *
1643835 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
1643859 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
1643882 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:1651316 original size:21 final size:17
Alignment explanation
Indices: 1651263--1651313 Score: 95
Period size: 17 Copynumber: 3.1 Consensus size: 17
1651253 TTAGAATATG
1651263 AAAAT-AATATTTATTT
1 AAAATAAATATTTATTT
1651279 AAAATAAATATTTATTT
1 AAAATAAATATTTATTT
1651296 AAAATAAATATTTATTT
1 AAAATAAATATTTATTT
1651313 A
1 A
1651314 TTTTCTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 5 0.15
17 29 0.85
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAAATATTTATTT
Found at i:1654724 original size:21 final size:21
Alignment explanation
Indices: 1654698--1654755 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
1654688 GTTTCCAGAT
*
1654698 TCGCAACGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1654719 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1654740 TCGCAATGCGAACTTG
1 TCGCAATGCGAACTTG
1654756 TAAATCACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:1655970 original size:23 final size:23
Alignment explanation
Indices: 1655944--1656010 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
1655934 AGGTAGAGAA
* * * *
1655944 AAACATGTCACAAAGACATAGAT
1 AAACGTGTCATAAAGACATAAAC
*
1655967 AAACGTGTCATAAAGTCATAAAC
1 AAACGTGTCATAAAGACATAAAC
*
1655990 AAACGTGTCATGAAGACATAA
1 AAACGTGTCATAAAGACATAA
1656011 TTGTTCTTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.19
Consensus pattern (23 bp):
AAACGTGTCATAAAGACATAAAC
Found at i:1656362 original size:15 final size:15
Alignment explanation
Indices: 1656334--1656366 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
1656324 AATAAGACGA
1656334 AAAGCAAAAGTAAAT
1 AAAGCAAAAGTAAAT
1656349 AAAG-AAAAGATAAAT
1 AAAGCAAAAG-TAAAT
1656364 AAA
1 AAA
1656367 TGGATGTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.73, C:0.03, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAGCAAAAGTAAAT
Found at i:1661607 original size:30 final size:30
Alignment explanation
Indices: 1661545--1661609 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
1661535 TCTGACAATA
* * *
1661545 AACCGGCTGAAAACCTGTAAAACCGGGGTG
1 AACCGGCTGAAAACCAGCAAAACCGAGGTG
**
1661575 AACCGGCTGAAAACCAGCAAAACCGATTTG
1 AACCGGCTGAAAACCAGCAAAACCGAGGTG
1661605 AACCG
1 AACCG
1661610 CCGGTTCACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.26, G:0.25, T:0.12
Consensus pattern (30 bp):
AACCGGCTGAAAACCAGCAAAACCGAGGTG
Found at i:1661864 original size:24 final size:25
Alignment explanation
Indices: 1661828--1661874 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
1661818 GAACTCAAAA
*
1661828 AAAATTAGAAGTTCGATTGAAGCCT
1 AAAATTAGAAGTTCAATTGAAGCCT
*
1661853 AAAATTTG-AGTTCAATTGAAGC
1 AAAATTAGAAGTTCAATTGAAGC
1661875 GAAATAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (25 bp):
AAAATTAGAAGTTCAATTGAAGCCT
Found at i:1669522 original size:2 final size:2
Alignment explanation
Indices: 1669515--1669539 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1669505 TCACATAAAC
1669515 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1669540 GGGTAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1669742 original size:31 final size:31
Alignment explanation
Indices: 1669698--1669774 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
1669688 AGTTTCAAAA
*
1669698 GTAA-AAAATTGGTCAATGATGTTATCGATTT
1 GTAACAAAA-TGGTCAATAATGTTATCGATTT
*
1669729 GTAACAAAATGGTCACTAATGTTATCGATTT
1 GTAACAAAATGGTCAATAATGTTATCGATTT
*
1669760 GTAACAAAATAGTCA
1 GTAACAAAATGGTCA
1669775 CTCCACCGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
31 38 0.90
32 4 0.10
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (31 bp):
GTAACAAAATGGTCAATAATGTTATCGATTT
Found at i:1669775 original size:31 final size:31
Alignment explanation
Indices: 1669716--1669776 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
1669706 TTGGTCAATG
*
1669716 ATGTTATCGATTTGTAACAAAATGGTCACTA
1 ATGTTATCGATTTGTAACAAAATAGTCACTA
1669747 ATGTTATCGATTTGTAACAAAATAGTCACT
1 ATGTTATCGATTTGTAACAAAATAGTCACT
1669777 CCACCGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (31 bp):
ATGTTATCGATTTGTAACAAAATAGTCACTA
Found at i:1670534 original size:31 final size:31
Alignment explanation
Indices: 1670499--1670570 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
1670489 ATGACGATGG
* *
1670499 AGTGATCATTTTGTTACAAATCGATAACGTT
1 AGTGACCATTTTATTACAAATCGATAACGTT
*
1670530 AGTGACCATTTTATTACAAATCGATAACTTT
1 AGTGACCATTTTATTACAAATCGATAACGTT
1670561 AGTGACCATT
1 AGTGACCATT
1670571 GGTGTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (31 bp):
AGTGACCATTTTATTACAAATCGATAACGTT
Found at i:1671158 original size:22 final size:24
Alignment explanation
Indices: 1671132--1671181 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
1671122 TAATCACATC
1671132 TTAATTAAA-AAA-ATAAAAAAAA
1 TTAATTAAATAAATATAAAAAAAA
*
1671154 TTAATTAAATAAATATAAAAATAA
1 TTAATTAAATAAATATAAAAAAAA
1671178 TTAA
1 TTAA
1671182 ATATTATACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 9 0.36
23 3 0.12
24 13 0.52
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
TTAATTAAATAAATATAAAAAAAA
Found at i:1681190 original size:42 final size:42
Alignment explanation
Indices: 1681125--1681233 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
1681115 TTTTTTTGAA
* *
1681125 TTTTCGTGTTTGTATCACCTAATTCGTTTT-TCGAAAAATATT
1 TTTTCGTGTTTGTTTCACGTAATTCGTTTTCT-GAAAAATATT
1681167 TTTTCGTGTTTGTTTCACGTAATTCGTTTTCTGAAAAATATT
1 TTTTCGTGTTTGTTTCACGTAATTCGTTTTCTGAAAAATATT
* *
1681209 TTTTCAGTGCTTATTTCACGTAATT
1 TTTTC-GTGTTTGTTTCACGTAATT
1681234 AATTTTCCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 43 0.70
43 18 0.30
ACGTcount: A:0.22, C:0.14, G:0.13, T:0.51
Consensus pattern (42 bp):
TTTTCGTGTTTGTTTCACGTAATTCGTTTTCTGAAAAATATT
Found at i:1681240 original size:43 final size:41
Alignment explanation
Indices: 1681152--1681240 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 41
1681142 CCTAATTCGT
* * **
1681152 TTTTCGAAAAATATTTTTTCGTGTTTGTTTCACGTAATTCG
1 TTTTCGAAAAATATTTTTTCGTGCTTATTTCACGTAATTAA
1681193 TTTTCTGAAAAATATTTTTTCAGTGCTTATTTCACGTAATTAA
1 TTTTC-GAAAAATATTTTTTC-GTGCTTATTTCACGTAATTAA
1681236 TTTTC
1 TTTTC
1681241 CGGAAAGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 5 0.12
42 15 0.36
43 22 0.52
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52
Consensus pattern (41 bp):
TTTTCGAAAAATATTTTTTCGTGCTTATTTCACGTAATTAA
Found at i:1681452 original size:22 final size:23
Alignment explanation
Indices: 1681422--1681465 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
1681412 TTTATTTATT
1681422 TATTAATATTTATAATAATATAA
1 TATTAATATTTATAATAATATAA
* *
1681445 TATT-ATATTTTTAATATTATA
1 TATTAATATTTATAATAATATA
1681466 TAAAATAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTAATATTTATAATAATATAA
Done.