genome.fa.s891.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000891.1 Hibiscus syriacus cultivar Beakdansim tig00001743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36672

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5828--5905	34	2.2	35	82	8	88	46	17	3	32	1.67
7213--7266	28	1.9	28	100	0	108	7	0	22	70	1.12
7934--7981	24	2.0	24	91	0	78	29	20	4	45	1.70
8292--8345	28	1.9	28	92	7	92	5	0	24	70	1.08
14001--14030	15	1.9	16	93	6	53	36	23	13	26	1.92
14137--14193	14	4.2	13	80	8	60	24	0	24	50	1.49
14273--14326	15	3.4	15	87	12	81	40	1	7	50	1.41
14273--14326	17	3.2	17	89	7	76	40	1	7	50	1.41
14297--14342	20	2.3	20	85	3	58	39	8	6	45	1.61
14517--14567	21	2.4	21	80	0	66	23	3	33	39	1.73
14869--14906	20	2.0	20	89	5	60	28	34	0	36	1.58
15050--15090	13	3.0	13	86	13	64	39	7	7	46	1.60
15050--15115	28	2.4	28	84	0	78	43	7	4	43	1.53
15129--15164	18	1.9	19	88	5	56	47	0	8	44	1.33
15142--15175	13	2.6	13	90	0	50	44	0	8	47	1.34
15041--15175	15	9.0	15	70	16	93	43	4	5	45	1.48
15128--15193	30	2.2	30	86	13	91	43	1	6	48	1.36
16092--16421	42	7.8	41	89	5	464	31	24	25	18	1.98
16092--16421	84	3.9	84	93	2	520	31	24	25	18	1.98
17296--17431	29	4.6	30	73	12	104	39	23	6	30	1.80
17277--17432	29	5.4	29	72	7	102	41	21	6	30	1.78
17474--17513	5	7.4	5	84	15	53	5	22	55	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21905--22254	174	2.0	176	98	1	686	24	31	17	26	1.97
23164--23494	42	7.8	41	88	5	457	32	24	24	18	1.97
23164--23494	84	3.9	84	91	2	513	32	24	24	18	1.97
24334--24463	29	4.4	29	74	9	93	43	20	6	29	1.76
24334--24418	29	2.9	28	84	10	100	41	21	5	31	1.77
24350--24515	90	1.8	90	87	2	244	45	19	6	28	1.74
24548--24584	13	2.8	13	91	0	65	10	24	45	18	1.81
24525--24585	18	3.7	18	79	20	87	9	22	49	18	1.77
25794--25861	30	2.3	30	97	0	127	23	23	19	33	1.97
26256--26284	13	2.2	13	100	0	58	20	13	10	55	1.68
28103--28143	2	20.5	2	100	0	82	51	0	0	48	1.00
31561--31590	2	15.0	2	100	0	60	50	0	0	50	1.00
32482--32539	21	2.8	21	81	0	62	39	5	12	43	1.64
34394--34437	18	2.5	17	81	7	52	4	9	9	77	1.12
34394--34432	18	2.2	18	86	4	53	5	10	5	79	1.04

Tables:   1

The End!