genome.fa.s8915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008915.1 Hibiscus syriacus cultivar Beakdansim tig00112219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65679

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14334--14407	31	2.4	31	79	2	85	25	32	27	14	1.95
14287--14407	63	1.9	63	81	6	147	24	29	28	17	1.97
15279--15328	7	7.4	7	91	8	86	24	30	30	16	1.96
15279--15328	13	3.8	13	97	2	91	24	30	30	16	1.96
15279--15328	20	2.5	21	90	9	86	24	30	30	16	1.96
15317--15376	16	3.7	16	86	4	93	16	25	40	18	1.91
21650--21726	31	2.5	31	80	2	91	27	31	27	14	1.95
21603--21726	63	2.0	63	82	6	153	25	29	28	16	1.97
22595--22644	7	7.4	7	91	8	86	24	30	30	16	1.96
22595--22644	13	3.8	13	97	2	91	24	30	30	16	1.96
22595--22644	20	2.5	21	90	9	86	24	30	30	16	1.96
22634--22674	17	2.4	17	95	0	73	17	24	41	17	1.89
22668--22718	19	2.7	19	90	6	77	23	31	27	17	1.97
22670--22718	9	5.1	10	78	9	57	24	32	24	18	1.97
30417--30495	19	4.2	19	80	7	90	15	29	30	25	1.96
30402--30495	9	10.0	9	83	8	98	13	28	30	26	1.94
30402--30489	38	2.3	38	98	0	167	13	27	31	27	1.94
30521--30557	17	2.2	17	90	0	56	16	43	24	16	1.87
37686--37786	10	10.6	10	81	9	122	18	23	31	25	1.98
37685--37786	19	5.4	19	97	2	172	18	23	32	25	1.97
37666--37792	29	4.5	27	79	15	116	18	25	29	25	1.98
44842--44910	9	7.3	9	73	9	57	15	24	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47097--47145	5	9.8	5	82	12	57	4	22	53	20	1.63
47090--47134	22	2.0	22	100	0	90	8	22	51	17	1.73
47142--47191	19	2.6	19	84	6	66	26	28	28	18	1.98
59987--60030	22	2.0	22	95	0	79	11	22	47	18	1.80
59987--60024	12	3.3	12	78	14	53	13	23	44	18	1.85
59992--60043	17	2.9	18	77	8	61	7	23	50	19	1.73
60014--60050	18	2.1	18	89	0	56	8	27	45	18	1.77
60038--60097	10	6.3	9	81	9	66	28	30	28	13	1.94
60044--60106	9	6.7	9	78	10	63	28	30	26	14	1.95
60044--60106	19	3.3	19	78	12	76	28	30	26	14	1.95

Tables:   1

The End!